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Basic Information Integrated Annotations
Tag Content
iUUCD ID IUUC-Rno-105968
Ensembl Protein ID ENSRNOP00000055594.4
UniProt Accession E9PTQ0; B5DF10; E9PTQ0_RAT
Genbank Protein ID AAI68881.1
Protein Name LIM domain-binding 2; Ldb2 protein
Genbank Nucleotide ID AABR07015693
Gene Name Ldb2
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSRNOG00000003205.7 ENSRNOT00000083871.1 ENSRNOP00000072146.1
ENSRNOG00000003205.7 ENSRNOT00000058803.3 ENSRNOP00000055594.4
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpress
DNA & RNA Element
RAID2
Protein-protein Interaction
IID
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family Identity E-Value Score Source Orthology
E3 activity/RING/U-box 63.42 2.00e-125 446.00 IUUC-Dme-031667
Active Site
Position(s) Description Evidence
N/A N/A N/A
Organism Rattus norvegicus
Protein Sequence
(Fasta)
MSSTPHDPFY SSPFGPFYRR HTPYMVQPEY RIYEMNKRLQ SRTEDSDNLW WDAFATEFFE 60
DDATLTLSFC LEDGPKRYTI GRTLIPRYFS TVFEGGVTDL YYILKHSKES YHNSSITVDC 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Rno-105968|E3,U-box|Rattus norvegicus
Please wait for a moment...
Nucleotide Sequence
(Fasta)
TCGTTCCCTC TCCTCTCTCG CTATAGAGGG CTCCCACAGC ACTTCCCAGC CAGTGTGCTC 60
AGCCTGCCTG CCTGCCTGCC TCTCTGTGTG TGTGTGTGTG AGCGTGTGTG CGTGCGTCTA 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Rno-105968|E3,U-box|Rattus norvegicus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
Interpro

IPR030174--LDB2
IPR029005--LIM-bd/SEUSS
Gene Ontology

GO:0031252--C:cell leading edge
GO:0005730--C:nucleolus
GO:0005886--C:plasma membrane
GO:0005667--C:transcription factor complex
GO:0000989--F:transcription factor activity, transcription factor binding
GO:0010669--P:epithelial structure maintenance
GO:0001942--P:hair follicle development
GO:0044089--P:positive regulation of cellular component biogenesis
GO:0045944--P:positive regulation of transcription from RNA polymerase II promoter
GO:0030334--P:regulation of cell migration
GO:0043549--P:regulation of kinase activity
GO:0035019--P:somatic stem cell population maintenance
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000177 Aegilops tauschii 23.18 5.00e-03 37.00
IUUC-Aml-002031 Ailuropoda melanoleuca 76.82 4.00e-152 531.00
IUUC-Atr-003083 Amborella trichopoda 21.39 3.00e-04 41.20
IUUC-Apl-004210 Anas platyrhynchos 80.42 3.00e-119 421.00
IUUC-Aca-005241 Anolis carolinensis 77.65 9.00e-154 536.00
IUUC-Aly-006204 Arabidopsis lyrata 25.00 9.00e-07 49.30
IUUC-Ath-007339 Arabidopsis thaliana 25.00 9.00e-07 49.30
IUUC-Ame-010910 Astyanax mexicanus 73.18 1.00e-148 519.00
IUUC-Bgr-012180 Blumeria graminis 21.30 1.00e-06 48.10
IUUC-Bta-012596 Bos taurus 97.30 0.00e+00 680.00
IUUC-Bci-013927 Botrytis cinerea 28.57 2.00e-08 54.70
IUUC-Bol-015721 Brassica oleracea 25.00 3.00e-07 50.40
IUUC-Bra-017183 Brassica rapa 25.00 3.00e-07 50.40
IUUC-Cel-018189 Caenorhabditis elegans 33.77 5.00e-29 122.00
IUUC-Cja-019586 Callithrix jacchus 97.59 0.00e+00 689.00
IUUC-Cfa-021188 Canis familiaris 76.82 7.00e-152 530.00
IUUC-Cpo-022350 Cavia porcellus 76.82 1.00e-150 525.00
IUUC-Csa-023816 Chlorocebus sabaeus 77.09 2.00e-152 531.00
IUUC-Cho-024958 Choloepus hoffmanni 81.07 2.00e-94 338.00
IUUC-Cin-025721 Ciona intestinalis 53.75 1.00e-93 336.00
IUUC-Csv-026065 Ciona savignyi 56.07 4.00e-97 348.00
IUUC-Dre-027356 Danio rerio 82.47 0.00e+00 628.00
IUUC-Dno-029918 Dasypus novemcinctus 77.20 2.00e-148 518.00
IUUC-Dor-030634 Dipodomys ordii 76.82 5.00e-152 530.00
IUUC-Dse-031245 Dothistroma septosporum 25.00 6.00e-04 39.70
IUUC-Dme-031667 Drosophila melanogaster 63.93 2.00e-125 442.00
IUUC-Ete-032246 Echinops telfairi 95.44 0.00e+00 660.00
IUUC-Eca-034015 Equus caballus 97.59 0.00e+00 689.00
IUUC-Eeu-034902 Erinaceus europaeus 76.82 5.00e-152 530.00
IUUC-Fca-035903 Felis catus 76.39 1.00e-150 525.00
IUUC-Fal-037407 Ficedula albicollis 96.77 0.00e+00 669.00
IUUC-Gmo-039466 Gadus morhua 74.22 2.00e-156 545.00
IUUC-Ggr-040030 Gaeumannomyces graminis 23.98 4.00e-05 43.50
IUUC-Gga-040214 Gallus gallus 78.09 3.00e-155 541.00
IUUC-Gac-042214 Gasterosteus aculeatus 73.54 5.00e-158 550.00
IUUC-Gma-042794 Glycine max 24.34 2.00e-08 55.10
IUUC-Ggo-044988 Gorilla gorilla 97.59 0.00e+00 694.00
IUUC-Hsa-046092 Homo sapiens 98.38 0.00e+00 696.00
IUUC-Itr-047934 Ictidomys tridecemlineatus 76.82 6.00e-152 530.00
IUUC-Lch-049895 Latimeria chalumnae 85.94 3.00e-105 374.00
IUUC-Lpe-050806 Leersia perrieri 25.69 7.00e-05 43.10
IUUC-Loc-052845 Lepisosteus oculatus 73.39 2.00e-155 541.00
IUUC-Lma-053090 Leptosphaeria maculans 25.20 4.00e-06 47.00
IUUC-Laf-054538 Loxodonta africana 75.88 1.00e-154 539.00
IUUC-Mcc-055116 Macaca mulatta 97.97 1.00e-154 538.00
IUUC-Meu-056777 Macropus eugenii 70.87 8.00e-137 479.00
IUUC-Mpo-057376 Magnaporthe poae 24.28 3.00e-05 44.30
IUUC-Mtr-058142 Medicago truncatula 25.38 5.00e-08 53.50
IUUC-Mga-059716 Meleagris gallopavo 95.69 0.00e+00 664.00
IUUC-Mmr-060649 Microcebus murinus 97.05 0.00e+00 689.00
IUUC-Mdo-062535 Monodelphis domestica 96.25 0.00e+00 671.00
IUUC-Mmu-064036 Mus musculus 99.19 0.00e+00 697.00
IUUC-Mac-065338 Musa acuminata 25.14 6.00e-06 46.60
IUUC-Mpu-065719 Mustela putorius furo 76.82 6.00e-152 530.00
IUUC-Mlu-067219 Myotis lucifugus 75.83 3.00e-149 521.00
IUUC-Ncr-068691 Neurospora crassa 20.61 5.00e-04 40.00
IUUC-Nle-068983 Nomascus leucogenys 97.75 0.00e+00 653.00
IUUC-Opr-070467 Ochotona princeps 76.82 5.00e-152 530.00
IUUC-Ont-071566 Oreochromis niloticus 75.07 5.00e-159 553.00
IUUC-Oan-073368 Ornithorhynchus anatinus 76.75 1.00e-152 532.00
IUUC-Ocu-074854 Oryctolagus cuniculus 97.21 0.00e+00 657.00
IUUC-Ola-086364 Oryzias latipes 75.63 2.00e-158 551.00
IUUC-Oga-088235 Otolemur garnettii 95.98 0.00e+00 674.00
IUUC-Oar-089547 Ovis aries 76.82 4.00e-152 531.00
IUUC-Ptr-091423 Pan troglodytes 97.59 0.00e+00 687.00
IUUC-Pan-092378 Papio anubis 77.09 2.00e-152 531.00
IUUC-Psi-093638 Pelodiscus sinensis 95.71 0.00e+00 659.00
IUUC-Pma-094384 Petromyzon marinus 64.77 2.00e-54 204.00
IUUC-Pno-095027 Phaeosphaeria nodorum 22.18 7.00e-07 49.30
IUUC-Pfo-096031 Poecilia formosa 74.16 6.00e-160 556.00
IUUC-Pab-097886 Pongo abelii 97.75 0.00e+00 653.00
IUUC-Pop-099430 Populus trichocarpa 25.82 2.00e-06 48.50
IUUC-Pca-101138 Procavia capensis 76.82 5.00e-152 530.00
IUUC-Ppe-101293 Prunus persica 24.77 2.00e-07 51.20
IUUC-Pva-103215 Pteropus vampyrus 97.32 0.00e+00 691.00
IUUC-Pte-104238 Pyrenophora teres 29.49 1.00e-05 44.70
IUUC-Sha-107595 Sarcophilus harrisii 75.91 4.00e-150 524.00
IUUC-Sja-107950 Schizosaccharomyces japonicus 16.97 4.00e-05 42.70
IUUC-Ssl-108527 Sclerotinia sclerotiorum 24.68 4.00e-06 46.60
IUUC-Smo-109552 Selaginella moellendorffii 19.70 4.00e-06 47.00
IUUC-Sly-110873 Solanum lycopersicum 26.09 4.00e-07 50.40
IUUC-Stu-112586 Solanum tuberosum 21.05 1.00e-05 45.10
IUUC-Sar-113076 Sorex araneus 91.94 3.00e-136 478.00
IUUC-Sre-115143 Sporisorium reilianum 25.00 1.20e-01 32.00
IUUC-Ssc-115755 Sus scrofa 77.25 1.00e-153 535.00
IUUC-Tgu-117326 Taeniopygia guttata 96.50 0.00e+00 666.00
IUUC-Tru-117858 Takifugu rubripes 80.97 0.00e+00 637.00
IUUC-Tsy-119296 Tarsius syrichta 90.35 7.00e-179 619.00
IUUC-Tni-119822 Tetraodon nigroviridis 75.07 6.00e-158 550.00
IUUC-Tca-120935 Theobroma cacao 25.38 5.00e-08 53.50
IUUC-Tbe-127366 Tupaia belangeri 75.98 1.00e-146 512.00
IUUC-Ttr-128484 Tursiops truncatus 86.86 1.00e-170 592.00
IUUC-Vpa-130304 Vicugna pacos 97.63 4.00e-154 536.00
IUUC-Vvi-131560 Vitis vinifera 23.01 8.00e-06 46.20
IUUC-Xtr-132062 Xenopus tropicalis 78.09 2.00e-155 541.00
IUUC-Xma-134288 Xiphophorus maculatus 75.35 1.00e-159 556.00
IUUC-Yli-134374 Yarrowia lipolytica 20.47 2.00e-03 37.70
IUUC-Zma-135310 Zea mays 23.56 8.00e-04 39.30
Created Date 25-Jun-2017

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