iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099357

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Zinc finger family protein

Genbank Nucleotide ID

CM000337

Gene Name

POPTRDRAFT_847253; POPTR_0001s12980g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0001s12980	POPTR_0001s12980.1	POPTR_0001s12980.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	5.80e-08	33.8	131	180
E3 activity/RING/RING	4.70e-12	47.4	135	174

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 4    eeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqpltee 53
           +e+ C+  +++   Pv++p+G+ +  ++ ++w+ +g++tc  +r ++ ++
   Q: 131  KELTCSFCMQMLDRPVTTPCGHNFCLKCFQRWIGQGKRTCAYCRVQIPPK 180
           5889*************************************999888665 PP

E3 activity/RING/RING

   S: 1    CaiCledfkdgplvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           C++C++++++ p+++pCgH f+++C+q+w       +++ +C +Cr
   Q: 135  CSFCMQMLDR-PVTTPCGHNFCLKCFQRW-----IGQGKRTCAYCR 174
           **********.9*****************.....699999*****8 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MELPCDGAGI CMACKNKPPN EETLNCKTCA TPWHATCLVY PPQELADTLQ WECPDCSMIN 60
PPSTSAVAAG RSEEAGELIA SIRKIEDDKS LTEQEKAKKR QKLLSGAAAG PSPSDGDEKK 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GGAAAAAAAA TACCAGACAG TTACGACGCC GTTGCTTTTG AACAAAATGG AACTACCATG 60
CGACGGAGCG GGCATTTGCA TGGCCTGCAA AAACAAGCCA CCAAATGAAG AAACCCTCAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR015947--PUA-like_domain
IPR003105--SRA_YDG
IPR019786--Zinc_finger_PHD-type_CS
IPR027370--Znf-RING_LisH
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS51015--YDG
PS01359--ZF_PHD_1
PS50016--ZF_PHD_2
PS00518--ZF_RING_1
PS50089--ZF_RING_2

Pfam

PF02182--SAD_SRA
PF13445--zf-RING_UBOX

SMART

SM00249--PHD
SM00184--RING
SM00466--SRA

Gene Ontology

GO:0005720--C:nuclear heterochromatin
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0010216--P:maintenance of DNA methylation
GO:0016567--P:protein ubiquitination
GO:0090308--P:regulation of methylation-dependent chromatin silencing

KEGG

pop:POPTR_0001s12980g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001401	Ailuropoda melanoleuca	33.51	9.00e-47	181.00
IUUC-Apl-003819	Anas platyrhynchos	34.58	2.00e-51	197.00
IUUC-Cja-019807	Callithrix jacchus	33.70	9.00e-46	178.00
IUUC-Cfa-020558	Canis familiaris	47.09	5.00e-44	172.00
IUUC-Csa-023951	Chlorocebus sabaeus	33.70	6.00e-46	178.00
IUUC-Cho-024857	Choloepus hoffmanni	41.60	2.00e-21	97.10
IUUC-Cin-025454	Ciona intestinalis	34.47	4.00e-47	182.00
IUUC-Eca-033266	Equus caballus	47.06	2.00e-43	170.00
IUUC-Eeu-035077	Erinaceus europaeus	47.98	2.00e-36	146.00
IUUC-Fca-035570	Felis catus	33.43	5.00e-44	172.00
IUUC-Fal-037550	Ficedula albicollis	36.34	1.00e-50	194.00
IUUC-Ggo-045639	Gorilla gorilla	33.70	1.00e-45	177.00
IUUC-Hsa-046422	Homo sapiens	33.70	1.00e-45	177.00
IUUC-Itr-048532	Ictidomys tridecemlineatus	33.42	3.00e-45	176.00
IUUC-Mcc-055815	Macaca mulatta	33.70	1.00e-45	177.00
IUUC-Mla-058836	Melampsora laricipopulina	50.00	7.00e-41	161.00
IUUC-Mmr-060646	Microcebus murinus	33.33	5.00e-45	175.00
IUUC-Ncr-068857	Neurospora crassa	30.77	5.00e-07	50.10
IUUC-Nle-069901	Nomascus leucogenys	33.70	2.00e-46	180.00
IUUC-Ola-086706	Oryzias latipes	46.70	3.00e-44	172.00
IUUC-Oga-088221	Otolemur garnettii	32.85	8.00e-50	191.00
IUUC-Oar-090189	Ovis aries	34.60	2.00e-46	180.00
IUUC-Pma-094339	Petromyzon marinus	50.00	4.00e-47	182.00
IUUC-Pab-098211	Pongo abelii	33.97	2.00e-46	180.00
IUUC-Pca-100531	Procavia capensis	32.67	3.00e-45	176.00
IUUC-Pte-104318	Pyrenophora teres	34.38	7.00e-11	62.80
IUUC-Sha-106687	Sarcophilus harrisii	37.12	6.00e-52	198.00
IUUC-Sre-115182	Sporisorium reilianum	43.01	2.00e-33	135.00
IUUC-Ttr-128215	Tursiops truncatus	33.89	3.00e-45	176.00
IUUC-Vda-129727	Verticillium dahliae	34.59	2.00e-11	63.20

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence