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Basic Information Integrated Annotations
Tag Content
UUCD2 ID IUUC-Rno-105134
UUCD1 version UUC-RaN-00245
Ensembl Protein ID ENSRNOP00000008113.5
UniProt Accession Q5XIH6; TRI54_RAT
Genbank Protein ID AAH83706.1
Protein Name Tripartite motif-containing protein 54; RING finger protein 30
Genbank Nucleotide ID BC083706
Gene Name Trim54; Rnf30
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSRNOG00000006146.6 ENSRNOT00000008113.6 ENSRNOP00000008113.5
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpress
DNA & RNA Element
TRANSFACRAID2
Protein-protein Interaction
IID
Protein Expression/Proteomics
Status Unreviewed
Classification
Family E-Value Score Start End
E3 activity/RING/RING 3.40e-09 37.5 26 82
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 activity/RING/RING
   S: 1    CaiCledfkdgplvlpCgHvfhadClqkw...........pglknssskefrCPlCr 46
           C+iCle+f++++++lpC+H  +++C + +                ss ++frCP Cr
   Q: 26   CPICLEMFSKPVVILPCQHNLCRKCANDVfqasnplwqsrGSTTVSSGGRFRCPSCR 82
           *************************87777777888899977777899********8 PP
   
Organism Rattus norvegicus
Functional Description
(View)

Functional Description


     May bind and stabilize microtubules during myotubes formation.
 May bind and stabilize microtubules during myotubes formation.
Protein Sequence
(Fasta)
MNFTVGFKPL LGDAHNMDNL EKQLICPICL EMFSKPVVIL PCQHNLCRKC ANDVFQASNP 60
LWQSRGSTTV SSGGRFRCPS CRHEVVLDRH GVYGLQRNLL VENIIDIYKQ ESSRPLHSKA 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Rno-105134|E3,RING|Rattus norvegicus
Please wait for a moment...
Nucleotide Sequence
(Fasta)
ATTAGTCTCT CTCGGGAGGA ACAAACAGTG CTGCCCGCAG AGCGAGCAAG AGGGTGGTTT 60
GGGGAGACAG GAGGAGAATC TCACAGGGAG AGAGAGATAA ACTACAAGTG CCTGGTGAGG 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Rno-105134|E3,RING|Rattus norvegicus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-0217--Developmental protein
KW-0221--Differentiation
KW-0479--Metal-binding
KW-0493--Microtubule
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger
Interpro

IPR017903--COS_domain
IPR033492--TRIM54
IPR027370--Znf-RING_LisH
IPR000315--Znf_B-box
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS
PROSITE

PS51262--COS
PS50119--ZF_BBOX
PS00518--ZF_RING_1
PS50089--ZF_RING_2
Pfam

PF00643--zf-B_box
PF13445--zf-RING_UBOX
SMART

SM00336--BBOX
SM00184--RING
Gene Ontology

GO:0005874--C:microtubule
GO:0005875--C:microtubule associated complex
GO:0030018--C:Z disc
GO:0008270--F:zinc ion binding
GO:0007275--P:multicellular organism development
GO:0055001--P:muscle cell development
GO:0007026--P:negative regulation of microtubule depolymerization
KEGG rno:362708
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aml-002282 Ailuropoda melanoleuca 96.01 2.00e-132 464.00
IUUC-Bta-013385 Bos taurus 96.10 2.00e-175 607.00
IUUC-Cja-019697 Callithrix jacchus 76.94 3.00e-136 477.00
IUUC-Cfa-020995 Canis familiaris 96.67 3.00e-167 581.00
IUUC-Cpo-021913 Cavia porcellus 95.03 0.00e+00 668.00
IUUC-Csa-023342 Chlorocebus sabaeus 95.28 0.00e+00 638.00
IUUC-Cin-025224 Ciona intestinalis 51.09 2.00e-93 335.00
IUUC-Csv-026374 Ciona savignyi 51.25 8.00e-81 293.00
IUUC-Dre-027562 Danio rerio 68.91 2.00e-143 501.00
IUUC-Dno-029582 Dasypus novemcinctus 97.26 3.00e-170 591.00
IUUC-Dor-031139 Dipodomys ordii 94.18 0.00e+00 644.00
IUUC-Eca-033645 Equus caballus 96.70 7.00e-177 612.00
IUUC-Eeu-035333 Erinaceus europaeus 68.53 7.00e-115 406.00
IUUC-Fca-035865 Felis catus 96.06 1.00e-178 619.00
IUUC-Fal-036978 Ficedula albicollis 80.85 1.00e-164 572.00
IUUC-Gga-040452 Gallus gallus 76.80 1.00e-161 561.00
IUUC-Gac-042590 Gasterosteus aculeatus 60.63 2.00e-100 359.00
IUUC-Ggo-044467 Gorilla gorilla 84.83 2.00e-169 588.00
IUUC-Hsa-046379 Homo sapiens 94.72 2.00e-175 607.00
IUUC-Itr-047912 Ictidomys tridecemlineatus 94.75 0.00e+00 632.00
IUUC-Lch-050029 Latimeria chalumnae 78.05 4.00e-151 527.00
IUUC-Loc-051801 Lepisosteus oculatus 80.62 2.00e-135 474.00
IUUC-Laf-054215 Loxodonta africana 95.04 0.00e+00 659.00
IUUC-Mcc-055027 Macaca mulatta 85.57 2.00e-179 621.00
IUUC-Meu-056412 Macropus eugenii 92.20 4.00e-165 573.00
IUUC-Mmr-060920 Microcebus murinus 95.56 0.00e+00 652.00
IUUC-Mdo-062832 Monodelphis domestica 95.74 1.00e-163 568.00
IUUC-Mmu-063707 Mus musculus 96.69 0.00e+00 629.00
IUUC-Mlu-067653 Myotis lucifugus 81.04 2.00e-136 478.00
IUUC-Nle-069020 Nomascus leucogenys 95.00 0.00e+00 630.00
IUUC-Opr-070577 Ochotona princeps 77.90 1.00e-141 496.00
IUUC-Ont-072491 Oreochromis niloticus 62.54 8.00e-120 423.00
IUUC-Oan-073101 Ornithorhynchus anatinus 93.94 6.00e-171 593.00
IUUC-Ocu-074454 Oryctolagus cuniculus 94.20 0.00e+00 625.00
IUUC-Oga-088361 Otolemur garnettii 97.31 2.00e-174 605.00
IUUC-Oar-089950 Ovis aries 80.18 2.00e-138 485.00
IUUC-Ptr-090785 Pan troglodytes 84.83 2.00e-169 588.00
IUUC-Pan-092344 Papio anubis 95.56 0.00e+00 641.00
IUUC-Pab-098322 Pongo abelii 91.94 4.00e-173 600.00
IUUC-Pca-100385 Procavia capensis 76.10 2.00e-122 431.00
IUUC-Sha-106768 Sarcophilus harrisii 95.44 7.00e-176 609.00
IUUC-Tgu-117494 Taeniopygia guttata 79.50 8.00e-156 542.00
Created Date 25-Jun-2017

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