iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
RAID2
Post-translational Modifications (PTMs)
dbPAF
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
UBD/Alpha-Helix/UBA	7.30e-09	35.9	619	652
ULD/UDP/UBQ/UBQ_PIM	6.60e-19	68.0	22	94

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

UBD/Alpha-Helix/UBA

   S: 6    kleqlveMGF.dreealqaLraannnleaAveyL 38
           +leql++MGF + e++lqaL a++++++aAve L
   Q: 619  QLEQLRAMGFlNLEANLQALIATGGDVDAAVEKL 652
           79*****************************988 PP

ULD/UDP/UBQ/UBQ_PIM

   S: 1    mkltvktlkgkefelevseddtveelKekiakesgvppeqqkLIyaGkiLkDdttLselgikdgsvvhlvvkks 74
           +++tvkt+k+ke  ++v    t+ +lKeki+++++ +p+q+ LI+aGkiLkD ++L ++g+ dg +vhlv+k +
   Q: 22   IRVTVKTPKDKE-DFSVVDTCTIRQLKEKISHRFKAHPNQLVLIFAGKILKDPDSLAQCGVRDGLTVHLVIKMQ 94
           68**********.**********************************************************976 PP

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MAKSGEALPQ GSPAPVQDSQ LIRVTVKTPK DKEDFSVVDT CTIRQLKEKI SHRFKAHPNQ 60
LVLIFAGKIL KDPDSLAQCG VRDGLTVHLV IKMQRRTTGT ECPAPPVSTP GPNPLELPQP 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GTACAGCAAG ATGAGGGCAG TTTGGAGCCC TGCCTAAGAG GAAGGACGGG GCCACAGCAG 60
ATTGGTGTGT ATCCCCCAAA TTGGGCCCTT TTATTGCCCC TTCCATTCCT TTATTCATCA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR006636--STI1_HS-bd
IPR015940--UBA
IPR009060--UBA-like
IPR015496--Ubiquilin
IPR029071--Ubiquitin-rel_dom
IPR000626--Ubiquitin_dom

PROSITE

PS50030--UBA
PS50053--UBIQUITIN_2

Pfam

PF00627--UBA
PF00240--ubiquitin

SMART

SM00727--STI1
SM00165--UBA
SM00213--UBQ

KEGG

rno:308905

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001302	Ailuropoda melanoleuca	73.59	0.00e+00	819.00
IUUC-Bgr-012188	Blumeria graminis	27.66	2.00e-10	60.10
IUUC-Bta-012941	Bos taurus	70.30	0.00e+00	693.00
IUUC-Cja-019387	Callithrix jacchus	73.48	0.00e+00	806.00
IUUC-Cfa-020572	Canis familiaris	73.89	0.00e+00	853.00
IUUC-Cpo-021846	Cavia porcellus	75.99	1.00e-122	433.00
IUUC-Csa-024187	Chlorocebus sabaeus	75.11	0.00e+00	791.00
IUUC-Cho-024936	Choloepus hoffmanni	73.44	0.00e+00	835.00
IUUC-Dno-029226	Dasypus novemcinctus	76.03	0.00e+00	896.00
IUUC-Ete-032824	Echinops telfairi	67.73	0.00e+00	719.00
IUUC-Eca-033383	Equus caballus	69.78	1.00e-177	616.00
IUUC-Fca-035855	Felis catus	74.35	0.00e+00	812.00
IUUC-Ggo-045636	Gorilla gorilla	74.96	0.00e+00	828.00
IUUC-Hsa-046761	Homo sapiens	74.96	0.00e+00	819.00
IUUC-Itr-049069	Ictidomys tridecemlineatus	78.32	0.00e+00	837.00
IUUC-Laf-054412	Loxodonta africana	83.23	3.00e-138	485.00
IUUC-Mcc-055310	Macaca mulatta	75.42	0.00e+00	794.00
IUUC-Mmr-060687	Microcebus murinus	79.66	0.00e+00	856.00
IUUC-Mdo-062941	Monodelphis domestica	70.54	4.00e-122	431.00
IUUC-Mmu-063953	Mus musculus	90.58	0.00e+00	1019.00
IUUC-Mpu-066645	Mustela putorius furo	85.96	2.00e-124	439.00
IUUC-Nle-069745	Nomascus leucogenys	75.57	0.00e+00	815.00
IUUC-Ocu-073979	Oryctolagus cuniculus	75.46	0.00e+00	831.00
IUUC-Oga-088802	Otolemur garnettii	77.40	0.00e+00	862.00
IUUC-Oar-089721	Ovis aries	70.86	0.00e+00	730.00
IUUC-Ptr-091188	Pan troglodytes	66.87	0.00e+00	703.00
IUUC-Pab-098116	Pongo abelii	76.03	0.00e+00	840.00
IUUC-Pca-100194	Procavia capensis	68.14	2.00e-165	575.00
IUUC-Pva-102958	Pteropus vampyrus	75.89	1.00e-177	615.00
IUUC-Pte-104090	Pyrenophora teres	40.28	1.00e-07	51.20
IUUC-Pyt-104472	Pyrenophora triticirepentis	40.28	8.00e-08	51.60
IUUC-Sha-107327	Sarcophilus harrisii	59.03	2.00e-175	609.00
IUUC-Sar-113022	Sorex araneus	72.41	0.00e+00	827.00
IUUC-Ssc-115333	Sus scrofa	73.37	1.00e-132	466.00
IUUC-Tsy-119637	Tarsius syrichta	71.48	2.00e-178	618.00
IUUC-Tbe-128150	Tupaia belangeri	73.03	5.00e-172	597.00
IUUC-Ttr-128507	Tursiops truncatus	71.45	0.00e+00	788.00
IUUC-Vpa-130797	Vicugna pacos	63.76	0.00e+00	698.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence