iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sja-107972

Ensembl Protein ID

EEB06094

UniProt Accession

B6JZU4; B6JZU4_SCHJY

Genbank Protein ID

EEB06094.2

Protein Name

Cdc48-Npl4-Ufd1 complex component Npl4

Genbank Nucleotide ID

KE651168

Gene Name

SJAG_01134

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
SJAG_01134	EEB06094	EEB06094

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
UBD/ZnF/NZF	35.90	2.00e-84	311.00	IUUC-Hsa-046334
UBD/ZnF/NZF	35.71	1.00e-85	315.00	IUUC-Mmu-063916
UBD/ZnF/NZF	35.53	1.00e-85	314.00	IUUC-Rno-105582
UBD/ZnF/Other	44.67	3.00e-138	486.00	IUUC-Sce-106145

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Schizosaccharomyces japonicus

Protein Sequence
(Fasta)

MILRFSSKRG LFRVSVEPSD SVKRVIEKIQ EFFGNSVPVK AIYLSKQPSK EKVPCTSFEG 60
KTVGDAGFKH GDMYSVTVDE DVVQAAAPST AKIETKNVER KDTISQNNTS APTQVQQDDV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GTTGACAAAC TATAGGACAG TCTTTGGTAA GGAGGATGCC AGTACTACCT CCCTGCCACC 60
AAAATCTCAA GAGTCAGTGC CGTACTACAG ACAAGCATCT GATATAGAAA AGTTGTCAAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR016563--Npl4
IPR007717--NPL4_C
IPR024682--Npl4_Ub-like_dom
IPR007716--NPL4_Zn-bd_put
IPR029071--Ubiquitin-rel_dom

Pfam

PF05021--NPL4
PF11543--UN_NPL4
PF05020--zf-NPL4

Gene Ontology

GO:0036266--C:Cdc48p-Npl4p-Vms1p AAA ATPase complex
GO:0005829--C:cytosol
GO:0000837--C:Doa10p ubiquitin ligase complex
GO:0000839--C:Hrd1p ubiquitin ligase ERAD-L complex
GO:0005634--C:nucleus
GO:1990112--C:RQC complex
GO:0034098--C:VCP-NPL4-UFD1 AAA ATPase complex
GO:0071712--P:ER-associated misfolded protein catabolic process
GO:0072671--P:mitochondria-associated ubiquitin-dependent protein catabolic process
GO:0051228--P:mitotic spindle disassembly
GO:0051974--P:negative regulation of telomerase activity
GO:0070651--P:nonfunctional rRNA decay
GO:1900182--P:positive regulation of protein localization to nucleus
GO:0030970--P:retrograde protein transport, ER to cytosol
GO:1990116--P:ribosome-associated ubiquitin-dependent protein catabolic process
GO:0071629--P:ubiquitin-dependent catabolism of misfolded proteins by cytoplasm-associated proteasome
GO:0030433--P:ubiquitin-dependent ERAD pathway

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000460	Aegilops tauschii	30.06	2.00e-10	58.50
IUUC-Aml-002268	Ailuropoda melanoleuca	35.59	5.00e-85	306.00
IUUC-Atr-002939	Amborella trichopoda	27.10	6.00e-07	46.60
IUUC-Apl-003496	Anas platyrhynchos	37.24	5.00e-83	300.00
IUUC-Aca-005230	Anolis carolinensis	36.09	6.00e-86	309.00
IUUC-Aly-006056	Arabidopsis lyrata	24.14	7.00e-07	46.20
IUUC-Ath-006993	Arabidopsis thaliana	23.76	2.00e-07	47.80
IUUC-Ago-007954	Ashbya gossypii	43.12	3.00e-127	446.00
IUUC-Acl-008208	Aspergillus clavatus	44.26	4.00e-143	499.00
IUUC-Afl-008574	Aspergillus flavus	45.50	8.00e-141	491.00
IUUC-Afu-008825	Aspergillus fumigatus	44.82	4.00e-148	516.00
IUUC-Ani-009495	Aspergillus nidulans	44.00	9.00e-142	494.00
IUUC-Ang-009762	Aspergillus niger	44.50	5.00e-140	489.00
IUUC-Aor-010199	Aspergillus oryzae	45.24	5.00e-140	489.00
IUUC-Ate-010592	Aspergillus terreus	47.83	5.00e-141	492.00
IUUC-Ame-011587	Astyanax mexicanus	24.76	1.00e-35	142.00
IUUC-Bgr-012124	Blumeria graminis	42.81	4.00e-137	479.00
IUUC-Bta-013312	Bos taurus	35.53	1.00e-86	311.00
IUUC-Bci-013648	Botrytis cinerea	43.32	7.00e-144	502.00
IUUC-Bdi-014326	Brachypodium distachyon	25.79	3.00e-10	57.80
IUUC-Bol-016294	Brassica oleracea	26.06	3.00e-07	47.40
IUUC-Bra-017023	Brassica rapa	25.30	9.00e-07	45.80
IUUC-Cel-018713	Caenorhabditis elegans	39.47	2.00e-76	278.00
IUUC-Cja-018869	Callithrix jacchus	35.71	2.00e-86	310.00
IUUC-Cfa-020757	Canis familiaris	35.53	1.00e-85	308.00
IUUC-Cpo-022390	Cavia porcellus	36.16	8.00e-85	305.00
IUUC-Csa-023366	Chlorocebus sabaeus	35.75	1.00e-86	311.00
IUUC-Cho-024455	Choloepus hoffmanni	35.55	8.00e-59	219.00
IUUC-Cin-025638	Ciona intestinalis	30.09	2.00e-58	217.00
IUUC-Csv-026310	Ciona savignyi	29.00	1.00e-54	205.00
IUUC-Cgl-026685	Colletotrichum gloeosporioides	44.15	3.00e-139	486.00
IUUC-Cne-026794	Cryptococcus neoformans	37.40	2.00e-112	397.00
IUUC-Cme-027248	Cyanidioschyzon merolae	30.49	4.00e-09	53.90
IUUC-Dre-027689	Danio rerio	34.93	9.00e-86	308.00
IUUC-Dno-030004	Dasypus novemcinctus	35.71	7.00e-88	316.00
IUUC-Dor-030585	Dipodomys ordii	39.95	7.00e-81	292.00
IUUC-Dse-031202	Dothistroma septosporum	41.51	5.00e-131	459.00
IUUC-Dme-032092	Drosophila melanogaster	33.56	4.00e-85	306.00
IUUC-Ete-033009	Echinops telfairi	43.21	3.00e-31	127.00
IUUC-Eca-034001	Equus caballus	35.53	3.00e-86	310.00
IUUC-Eeu-034485	Erinaceus europaeus	28.09	6.00e-45	172.00
IUUC-Fca-036128	Felis catus	35.90	4.00e-84	303.00
IUUC-Fal-037523	Ficedula albicollis	36.14	2.00e-88	317.00
IUUC-Fox-037802	Fusarium oxysporum	46.53	1.00e-150	525.00
IUUC-Fso-038152	Fusarium solani	45.79	3.00e-146	509.00
IUUC-Gmo-038486	Gadus morhua	40.77	4.00e-81	293.00
IUUC-Ggr-039916	Gaeumannomyces graminis	42.79	1.00e-139	488.00
IUUC-Gga-041208	Gallus gallus	35.77	2.00e-87	314.00
IUUC-Gac-042304	Gasterosteus aculeatus	35.10	2.00e-81	295.00
IUUC-Gma-044178	Glycine max	21.21	1.00e-04	38.90
IUUC-Ggo-045236	Gorilla gorilla	34.27	1.00e-78	285.00
IUUC-Hsa-046334	Homo sapiens	35.90	2.00e-86	311.00
IUUC-Hvu-047323	Hordeum vulgare	27.59	1.00e-03	33.90
IUUC-Itr-047878	Ictidomys tridecemlineatus	38.62	1.00e-68	251.00
IUUC-Lch-050302	Latimeria chalumnae	33.64	2.00e-81	294.00
IUUC-Lpe-051362	Leersia perrieri	25.16	1.00e-10	58.90
IUUC-Loc-052548	Lepisosteus oculatus	34.39	8.00e-82	295.00
IUUC-Lma-053092	Leptosphaeria maculans	45.00	7.00e-143	498.00
IUUC-Laf-053911	Loxodonta africana	35.71	4.00e-88	316.00
IUUC-Mcc-055830	Macaca mulatta	35.82	2.00e-86	311.00
IUUC-Meu-056460	Macropus eugenii	62.16	3.00e-09	54.30
IUUC-Mor-057189	Magnaporthe oryzae	43.84	5.00e-143	499.00
IUUC-Mpo-057366	Magnaporthe poae	43.28	1.00e-142	498.00
IUUC-Mtr-057834	Medicago truncatula	25.15	4.00e-04	37.40
IUUC-Mla-059190	Melampsora laricipopulina	42.63	6.00e-124	436.00
IUUC-Mga-060036	Meleagris gallopavo	35.78	2.00e-87	315.00
IUUC-Mvi-060275	Microbotryum violaceum	38.52	3.00e-115	407.00
IUUC-Mmr-061300	Microcebus murinus	34.74	3.00e-86	310.00
IUUC-Mdo-062911	Monodelphis domestica	35.71	1.00e-87	314.00
IUUC-Mmu-063916	Mus musculus	35.71	3.00e-85	306.00
IUUC-Mac-065601	Musa acuminata	28.68	3.00e-08	50.80
IUUC-Mpu-065912	Mustela putorius furo	35.71	1.00e-86	311.00
IUUC-Mlu-067965	Myotis lucifugus	35.59	2.00e-88	317.00
IUUC-Nfi-068465	Neosartorya fischeri	44.82	4.00e-148	516.00
IUUC-Ncr-068936	Neurospora crassa	44.19	3.00e-142	496.00
IUUC-Nle-069570	Nomascus leucogenys	35.75	8.00e-87	312.00
IUUC-Opr-071097	Ochotona princeps	38.66	8.00e-75	272.00
IUUC-Ont-071430	Oreochromis niloticus	36.26	6.00e-88	316.00
IUUC-Oan-073709	Ornithorhynchus anatinus	32.28	2.00e-62	231.00
IUUC-Ocu-074875	Oryctolagus cuniculus	33.58	1.00e-78	285.00
IUUC-Oba-075214	Oryza barthii	26.42	2.00e-10	58.20
IUUC-Obr-076758	Oryza brachyantha	27.04	1.00e-11	61.60
IUUC-Ogl-077665	Oryza glaberrima	26.42	2.00e-10	58.20
IUUC-Ogu-078899	Oryza glumaepatula	26.42	2.00e-10	58.20
IUUC-Oin-079167	Oryza indica	26.42	2.00e-10	58.20
IUUC-Olo-080451	Oryza longistaminata	26.42	1.00e-10	58.50
IUUC-Ome-081836	Oryza meridionalis	26.42	2.00e-10	58.20
IUUC-Oni-083019	Oryza nivara	26.42	2.00e-10	58.20
IUUC-Opu-083122	Oryza punctata	26.42	2.00e-10	58.50
IUUC-Oru-084900	Oryza rufipogon	26.42	2.00e-10	58.20
IUUC-Osa-086054	Oryza sativa	26.42	2.00e-10	58.20
IUUC-Ola-087077	Oryzias latipes	36.74	2.00e-74	271.00
IUUC-Oga-088049	Otolemur garnettii	36.96	1.00e-69	255.00
IUUC-Oar-089678	Ovis aries	35.53	9.00e-87	312.00
IUUC-Ptr-091380	Pan troglodytes	35.75	2.00e-86	311.00
IUUC-Pan-092821	Papio anubis	35.26	3.00e-83	300.00
IUUC-Psi-093074	Pelodiscus sinensis	35.15	2.00e-84	304.00
IUUC-Pma-094102	Petromyzon marinus	33.50	8.00e-82	296.00
IUUC-Pno-094987	Phaeosphaeria nodorum	43.67	8.00e-143	499.00
IUUC-Ppa-095368	Physcomitrella patens	27.11	3.00e-10	57.40
IUUC-Pfo-097245	Poecilia formosa	35.46	2.00e-84	304.00
IUUC-Pab-098763	Pongo abelii	35.82	2.00e-86	310.00
IUUC-Pop-099355	Populus trichocarpa	22.22	3.00e-05	40.40
IUUC-Pca-100920	Procavia capensis	40.00	6.50e-01	26.90
IUUC-Ppe-101990	Prunus persica	25.97	6.00e-06	43.10
IUUC-Pva-102308	Pteropus vampyrus	31.91	7.00e-64	236.00
IUUC-Pgr-103553	Puccinia graminis	42.01	7.00e-120	422.00
IUUC-Pte-104100	Pyrenophora teres	44.15	5.00e-145	506.00
IUUC-Pyt-104482	Pyrenophora triticirepentis	43.38	1.00e-143	501.00
IUUC-Rno-105582	Rattus norvegicus	35.53	9.00e-85	305.00
IUUC-Sce-106145	Saccharomyces cerevisiae	44.67	1.00e-134	471.00
IUUC-Sha-106647	Sarcophilus harrisii	35.97	1.00e-87	315.00
IUUC-Spo-108281	Schizosaccharomyces pombe	56.08	0.00e+00	646.00
IUUC-Ssl-108617	Sclerotinia sclerotiorum	43.81	1.00e-142	498.00
IUUC-Smo-108933	Selaginella moellendorffii	24.74	2.00e-06	45.10
IUUC-Sit-110083	Setaria italica	26.71	4.00e-11	60.50
IUUC-Sly-111645	Solanum lycopersicum	23.64	1.00e-05	42.00
IUUC-Stu-112422	Solanum tuberosum	26.63	6.00e-06	43.10
IUUC-Sbi-113987	Sorghum bicolor	25.79	3.00e-10	57.40
IUUC-Sre-115095	Sporisorium reilianum	40.55	5.00e-123	432.00
IUUC-Ssc-116141	Sus scrofa	39.15	1.00e-82	298.00
IUUC-Tgu-117492	Taeniopygia guttata	37.21	5.00e-84	302.00
IUUC-Tru-118463	Takifugu rubripes	34.08	5.00e-86	309.00
IUUC-Tsy-118993	Tarsius syrichta	31.32	5.00e-65	239.00
IUUC-Tni-119896	Tetraodon nigroviridis	34.98	6.00e-83	299.00
IUUC-Tca-121169	Theobroma cacao	24.60	2.00e-06	45.10
IUUC-Tre-122046	Trichoderma reesei	44.57	8.00e-146	508.00
IUUC-Tvi-122415	Trichoderma virens	45.08	1.00e-146	511.00
IUUC-Tae-125503	Triticum aestivum	30.06	1.00e-10	58.90
IUUC-Tme-127123	Tuber melanosporum	46.60	1.00e-152	531.00
IUUC-Tbe-127629	Tupaia belangeri	33.13	2.00e-40	158.00
IUUC-Ttr-128476	Tursiops truncatus	33.69	6.00e-71	259.00
IUUC-Uma-129492	Ustilago maydis	41.75	8.00e-127	445.00
IUUC-Vda-129702	Verticillium dahliae	44.43	2.00e-134	471.00
IUUC-Vvi-131090	Vitis vinifera	23.18	4.00e-06	43.90
IUUC-Xtr-131786	Xenopus tropicalis	35.97	9.00e-85	305.00
IUUC-Xma-133997	Xiphophorus maculatus	35.16	3.00e-85	307.00
IUUC-Yli-134537	Yarrowia lipolytica	43.90	4.00e-133	466.00
IUUC-Zma-134847	Zea mays	26.71	9.00e-11	59.30

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence