iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pab-097607

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

ABGA01158941

Gene Name

TRIM56

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSPPYG00000017437.1	ENSPPYT00000020319.1	ENSPPYP00000019548.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	3.20e-06	27.7	21	60

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledfkdgplvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           C iCle ++  p++lpC H++++dCl ++        ++ rCP Cr
   Q: 21   CKICLEQLRA-PKTLPCLHTYCQDCLAQL-----ADGGRVRCPECR 60
           99******99.***************555.....499999*****8 PP

Organism

Pongo abelii

Protein Sequence
(Fasta)

MVSHGSSPSL LEALSSDFLA CKICLEQLRA PKTLPCLHTY CQDCLAQLAD GGRVRCPECR 60
ETVPVPSEGV AAFKTNFFVN GLLDLVKARA CGDLRAGKPA CALCPLVGGT SAGGPATARC 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGTTTCCC ATGGGTCCTC GCCCTCCCTC CTAGAGGCCC TGAGCAGCGA CTTCCTGGCC 60
TGTAAAATCT GCCTGGAGCA GCTGCGGGCA CCCAAGACAC TGCCCTGCCT GCATACCTAC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR027370--Znf-RING_LisH
IPR000315--Znf_B-box
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS50119--ZF_BBOX
PS00518--ZF_RING_1
PS50089--ZF_RING_2

Pfam

PF00643--zf-B_box
PF13445--zf-RING_UBOX

SMART

SM00336--BBOX
SM00184--RING

Gene Ontology

GO:0005622--C:intracellular
GO:0003723--F:RNA binding
GO:0008270--F:zinc ion binding

KEGG

pon:100435513

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001496	Ailuropoda melanoleuca	90.14	0.00e+00	1162.00
IUUC-Aca-004996	Anolis carolinensis	54.51	1.00e-76	280.00
IUUC-Bta-012368	Bos taurus	86.75	0.00e+00	1165.00
IUUC-Cja-019698	Callithrix jacchus	95.36	0.00e+00	1289.00
IUUC-Csa-023090	Chlorocebus sabaeus	97.35	0.00e+00	1234.00
IUUC-Dno-030051	Dasypus novemcinctus	80.46	0.00e+00	980.00
IUUC-Ete-032312	Echinops telfairi	88.02	5.00e-93	333.00
IUUC-Eca-033253	Equus caballus	93.01	1.00e-106	379.00
IUUC-Eeu-034772	Erinaceus europaeus	80.43	2.00e-52	199.00
IUUC-Fca-036198	Felis catus	84.57	0.00e+00	921.00
IUUC-Ggo-045486	Gorilla gorilla	98.41	0.00e+00	1253.00
IUUC-Hsa-046238	Homo sapiens	98.41	0.00e+00	1251.00
IUUC-Itr-048481	Ictidomys tridecemlineatus	87.28	0.00e+00	1106.00
IUUC-Loc-052915	Lepisosteus oculatus	30.44	1.00e-70	260.00
IUUC-Laf-053640	Loxodonta africana	85.19	0.00e+00	1071.00
IUUC-Mcc-055540	Macaca mulatta	97.48	0.00e+00	1249.00
IUUC-Mmr-060840	Microcebus murinus	90.33	0.00e+00	1162.00
IUUC-Mmu-064375	Mus musculus	80.95	0.00e+00	1059.00
IUUC-Mpu-066797	Mustela putorius furo	88.59	0.00e+00	1148.00
IUUC-Mlu-067996	Myotis lucifugus	88.07	0.00e+00	1151.00
IUUC-Nle-069238	Nomascus leucogenys	99.26	2.00e-126	444.00
IUUC-Oga-089156	Otolemur garnettii	85.45	0.00e+00	1154.00
IUUC-Oar-090056	Ovis aries	81.79	0.00e+00	1030.00
IUUC-Ptr-090837	Pan troglodytes	97.98	0.00e+00	770.00
IUUC-Psi-093493	Pelodiscus sinensis	46.24	3.00e-60	226.00
IUUC-Pva-102758	Pteropus vampyrus	86.36	0.00e+00	1128.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence