iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
RAID2
Protein-protein Interaction
IID
Post-translational Modifications (PTMs)
CPLM	dbPAF	PhosphositePlus
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	8.30e-30	102.0	201	231
UBD/Beta-Prp	1.00e-64	218.9	197	403

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sdtllvsGsdDgtikvWDl 30
           H++ ++  +f  +d+ ++++sdDgt+++WD+
   Q: 201  HKEAIREASFspTDNKFATCSDDGTVRIWDF 231
           999999999**555****************6 PP

UBD/Beta-Prp

   S: 5    lkghhksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseD..rtikvwdlstgkcvhtlk 91
           ++++hk+ i+   fsp ++ +at s+dgt+++wd+ +    r l gh a v++v+++p++ + v+gs+D  + ik wd++tg+ + tl+
   Q: 197  MFQAHKEAIREASFSPTDNKFATCSDDGTVRIWDFLRCHEERILRGHGADVKCVDWHPTKGLVVSGSKDsqQPIKFWDPKTGQSLATLH 285
           6789999******************************9*9*****************************9999**************** PP
   S: 92   ghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdlktgkllrtltggh 179
           +h+++v+ ++++ +g++l+++s+d   +++d+++ ++  ++++gh++  + v++hp    l++sG+ D+ + +W +  +k +  ++ +h
   Q: 286  AHKNTVMEVKLNLNGNWLLTASRDHLCKLFDIRNLKEELQVFRGHKKEATAVAWHPVHeGLFASGGSDGSLLFWHVGVEKEVGGMEMAH 374
           ************************************9999************************************************* PP
   S: 180  tdsvyslsfdsngkelvsgsldgtvklwd 208
           ++++ sl++++ g  l sgs+d t k+w 
   Q: 375  EGMIWSLAWHPLGHILCSGSNDHTSKFWT 403
           ****************************6 PP

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MATEIGSPPR FFHMPRFQHQ APRQLFYKRP DFAQQQAMQQ LTFDGKRMRK AVNRKTIDYN 60
PSVIKYLENR IWQRDQRDMR AIQPDAGYYN DLVPPIGMLN NPMNAVTTKF VRTSTNKVKC 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GAAGATGGCG GCTGCATCTT TGAAGGAGAG GAATTGAGAG TGGGGAGAAG GGAAGAGGAC 60
CAGACGGGAG AGACATTCCC TACGGCGCCG AAGGACGCCG CGCTCGCGGT TAGGAGCTCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR016133--Insect_antifreeze_prot
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0001650--C:fibrillar center
GO:0005847--C:mRNA cleavage and polyadenylation specificity factor complex
GO:0003723--F:RNA binding
GO:0006379--P:mRNA cleavage

KEGG

rno:307524

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001064	Aegilops tauschii	49.76	4.00e-121	428.00
IUUC-Aml-001363	Ailuropoda melanoleuca	99.51	0.00e+00	1167.00
IUUC-Atr-003030	Amborella trichopoda	56.27	9.00e-135	474.00
IUUC-Apl-003409	Anas platyrhynchos	97.15	0.00e+00	1141.00
IUUC-Aca-004694	Anolis carolinensis	97.89	0.00e+00	1102.00
IUUC-Aly-006063	Arabidopsis lyrata	54.63	2.00e-134	473.00
IUUC-Ath-006583	Arabidopsis thaliana	50.69	1.00e-128	453.00
IUUC-Ago-007805	Ashbya gossypii	41.42	6.00e-80	291.00
IUUC-Acl-008075	Aspergillus clavatus	41.00	8.00e-92	331.00
IUUC-Afl-008582	Aspergillus flavus	41.82	7.00e-90	324.00
IUUC-Afu-008817	Aspergillus fumigatus	41.01	3.00e-79	288.00
IUUC-Ani-009391	Aspergillus nidulans	39.90	9.00e-84	304.00
IUUC-Ang-009750	Aspergillus niger	42.90	1.00e-75	276.00
IUUC-Aor-010085	Aspergillus oryzae	40.50	3.00e-91	329.00
IUUC-Ate-010397	Aspergillus terreus	40.75	7.00e-91	328.00
IUUC-Ame-010741	Astyanax mexicanus	85.76	8.00e-172	597.00
IUUC-Bgr-012169	Blumeria graminis	48.90	1.00e-97	350.00
IUUC-Bta-013265	Bos taurus	99.02	0.00e+00	1167.00
IUUC-Bci-013762	Botrytis cinerea	45.71	4.00e-102	365.00
IUUC-Bdi-014849	Brachypodium distachyon	55.73	3.00e-132	466.00
IUUC-Bol-015325	Brassica oleracea	54.39	1.00e-138	487.00
IUUC-Bra-017187	Brassica rapa	54.28	1.00e-138	486.00
IUUC-Cel-018378	Caenorhabditis elegans	50.92	3.00e-144	506.00
IUUC-Cja-019547	Callithrix jacchus	99.34	0.00e+00	1174.00
IUUC-Cfa-020031	Canis familiaris	99.51	0.00e+00	1164.00
IUUC-Cpo-021554	Cavia porcellus	93.96	0.00e+00	1061.00
IUUC-Cre-022830	Chlamydomonas reinhardtii	42.20	2.00e-70	259.00
IUUC-Csa-023146	Chlorocebus sabaeus	99.01	0.00e+00	1158.00
IUUC-Cho-024679	Choloepus hoffmanni	89.22	0.00e+00	1021.00
IUUC-Cin-025415	Ciona intestinalis	59.41	4.00e-170	591.00
IUUC-Csv-026003	Ciona savignyi	60.26	4.00e-173	600.00
IUUC-Cgl-026391	Colletotrichum gloeosporioides	46.85	4.00e-99	355.00
IUUC-Cne-026983	Cryptococcus neoformans	42.89	6.00e-96	345.00
IUUC-Cme-027147	Cyanidioschyzon merolae	50.88	2.00e-117	415.00
IUUC-Dre-028545	Danio rerio	90.29	0.00e+00	1085.00
IUUC-Dno-029677	Dasypus novemcinctus	99.18	0.00e+00	1162.00
IUUC-Dse-031371	Dothistroma septosporum	42.20	9.00e-87	314.00
IUUC-Dme-031663	Drosophila melanogaster	67.44	0.00e+00	684.00
IUUC-Ete-032511	Echinops telfairi	91.34	0.00e+00	1095.00
IUUC-Eca-034152	Equus caballus	99.51	0.00e+00	1165.00
IUUC-Eeu-034560	Erinaceus europaeus	86.31	8.00e-121	428.00
IUUC-Fca-035820	Felis catus	99.34	0.00e+00	1163.00
IUUC-Fox-037958	Fusarium oxysporum	45.90	6.00e-97	348.00
IUUC-Fso-038162	Fusarium solani	45.63	2.00e-95	343.00
IUUC-Gmo-039708	Gadus morhua	88.87	0.00e+00	1048.00
IUUC-Ggr-040031	Gaeumannomyces graminis	39.80	1.00e-83	303.00
IUUC-Gga-040963	Gallus gallus	97.31	0.00e+00	1142.00
IUUC-Gac-041541	Gasterosteus aculeatus	87.17	0.00e+00	1046.00
IUUC-Gma-044352	Glycine max	56.12	3.00e-133	469.00
IUUC-Ggo-045564	Gorilla gorilla	99.01	0.00e+00	1155.00
IUUC-Hsa-045833	Homo sapiens	99.34	0.00e+00	1162.00
IUUC-Hvu-047848	Hordeum vulgare	52.48	3.00e-92	332.00
IUUC-Itr-048083	Ictidomys tridecemlineatus	99.51	0.00e+00	1162.00
IUUC-Kpa-049308	Komagataella pastoris	40.31	3.00e-82	299.00
IUUC-Lch-050525	Latimeria chalumnae	93.96	0.00e+00	1041.00
IUUC-Lpe-051364	Leersia perrieri	51.06	3.00e-116	412.00
IUUC-Loc-052696	Lepisosteus oculatus	89.67	0.00e+00	1071.00
IUUC-Lma-052951	Leptosphaeria maculans	47.70	5.00e-103	368.00
IUUC-Laf-053653	Loxodonta africana	99.51	0.00e+00	1160.00
IUUC-Mcc-055797	Macaca mulatta	99.34	0.00e+00	1161.00
IUUC-Meu-056331	Macropus eugenii	93.65	0.00e+00	711.00
IUUC-Mor-057168	Magnaporthe oryzae	41.22	1.00e-91	330.00
IUUC-Mpo-057510	Magnaporthe poae	43.02	4.00e-62	231.00
IUUC-Mtr-058032	Medicago truncatula	55.87	2.00e-132	466.00
IUUC-Mla-058852	Melampsora laricipopulina	47.45	2.00e-112	399.00
IUUC-Mga-059311	Meleagris gallopavo	96.98	0.00e+00	1137.00
IUUC-Mvi-060544	Microbotryum violaceum	51.05	3.00e-114	405.00
IUUC-Mmr-061143	Microcebus murinus	99.51	0.00e+00	1164.00
IUUC-Mdo-061977	Monodelphis domestica	99.30	0.00e+00	1142.00
IUUC-Mmu-063922	Mus musculus	99.26	0.00e+00	1178.00
IUUC-Mac-064961	Musa acuminata	57.85	1.00e-137	483.00
IUUC-Mpu-066079	Mustela putorius furo	99.41	0.00e+00	963.00
IUUC-Mlu-067247	Myotis lucifugus	99.18	0.00e+00	1179.00
IUUC-Nfi-068255	Neosartorya fischeri	41.94	3.00e-86	312.00
IUUC-Ncr-068909	Neurospora crassa	44.05	1.00e-98	353.00
IUUC-Nle-068994	Nomascus leucogenys	99.34	0.00e+00	1162.00
IUUC-Opr-071079	Ochotona princeps	97.55	0.00e+00	1168.00
IUUC-Ont-071971	Oreochromis niloticus	89.84	0.00e+00	1085.00
IUUC-Oan-073135	Ornithorhynchus anatinus	99.19	0.00e+00	979.00
IUUC-Ocu-073982	Oryctolagus cuniculus	99.17	0.00e+00	1163.00
IUUC-Oba-075297	Oryza barthii	51.73	5.00e-119	421.00
IUUC-Obr-076641	Oryza brachyantha	55.95	2.00e-130	459.00
IUUC-Ogl-077539	Oryza glaberrima	58.78	1.00e-94	340.00
IUUC-Ogu-078807	Oryza glumaepatula	51.73	6.00e-119	421.00
IUUC-Oin-079229	Oryza indica	56.00	3.00e-132	465.00
IUUC-Olo-080371	Oryza longistaminata	51.62	7.00e-117	414.00
IUUC-Ome-081149	Oryza meridionalis	51.73	1.00e-118	420.00
IUUC-Oni-082970	Oryza nivara	51.73	6.00e-119	421.00
IUUC-Opu-083415	Oryza punctata	51.20	9.00e-117	414.00
IUUC-Oru-085236	Oryza rufipogon	51.73	3.00e-119	422.00
IUUC-Ola-087421	Oryzias latipes	91.38	0.00e+00	1082.00
IUUC-Olu-087821	Ostreococcus lucimarinus	49.45	8.00e-104	370.00
IUUC-Oga-088132	Otolemur garnettii	99.51	0.00e+00	1163.00
IUUC-Oar-089513	Ovis aries	99.02	0.00e+00	1167.00
IUUC-Ptr-090717	Pan troglodytes	99.34	0.00e+00	1162.00
IUUC-Pan-092108	Papio anubis	99.34	0.00e+00	1162.00
IUUC-Psi-093892	Pelodiscus sinensis	99.12	0.00e+00	1122.00
IUUC-Pma-094561	Petromyzon marinus	80.53	0.00e+00	938.00
IUUC-Pno-094943	Phaeosphaeria nodorum	45.04	2.00e-103	369.00
IUUC-Ppa-095359	Physcomitrella patens	61.23	7.00e-144	504.00
IUUC-Pfo-096516	Poecilia formosa	90.70	0.00e+00	1046.00
IUUC-Pab-097759	Pongo abelii	99.34	0.00e+00	1162.00
IUUC-Pop-098892	Populus trichocarpa	56.91	6.00e-137	481.00
IUUC-Pca-100405	Procavia capensis	87.55	5.00e-108	386.00
IUUC-Ppe-101957	Prunus persica	55.21	2.00e-134	473.00
IUUC-Pva-102918	Pteropus vampyrus	99.18	0.00e+00	1162.00
IUUC-Pgr-103594	Puccinia graminis	50.81	1.00e-115	410.00
IUUC-Ptt-103879	Puccinia triticina	54.52	6.00e-101	361.00
IUUC-Pte-104419	Pyrenophora teres	45.69	3.00e-104	372.00
IUUC-Pyt-104718	Pyrenophora triticirepentis	47.80	2.00e-102	366.00
IUUC-Sce-106331	Saccharomyces cerevisiae	39.14	1.00e-76	280.00
IUUC-Sha-107435	Sarcophilus harrisii	98.78	0.00e+00	1137.00
IUUC-Sja-107796	Schizosaccharomyces japonicus	44.53	5.00e-100	358.00
IUUC-Spo-108163	Schizosaccharomyces pombe	44.53	2.00e-103	369.00
IUUC-Smo-108972	Selaginella moellendorffii	57.33	2.00e-134	472.00
IUUC-Sit-109729	Setaria italica	57.33	5.00e-134	471.00
IUUC-Sly-111679	Solanum lycopersicum	57.82	7.00e-138	484.00
IUUC-Sar-113157	Sorex araneus	98.52	0.00e+00	1170.00
IUUC-Sbi-114853	Sorghum bicolor	53.68	5.00e-133	468.00
IUUC-Sre-115085	Sporisorium reilianum	41.45	4.00e-101	362.00
IUUC-Ssc-116286	Sus scrofa	99.01	0.00e+00	1162.00
IUUC-Tgu-117219	Taeniopygia guttata	97.31	0.00e+00	1143.00
IUUC-Tru-117550	Takifugu rubripes	90.05	0.00e+00	1055.00
IUUC-Tsy-119294	Tarsius syrichta	99.51	0.00e+00	1165.00
IUUC-Tni-120561	Tetraodon nigroviridis	88.81	0.00e+00	1065.00
IUUC-Tca-121347	Theobroma cacao	56.12	7.00e-135	474.00
IUUC-Tre-122018	Trichoderma reesei	43.91	2.00e-97	349.00
IUUC-Tvi-122413	Trichoderma virens	43.91	3.00e-96	345.00
IUUC-Tae-123191	Triticum aestivum	51.92	3.00e-131	462.00
IUUC-Tme-127077	Tuber melanosporum	50.54	5.00e-105	375.00
IUUC-Tbe-127744	Tupaia belangeri	74.12	6.00e-160	558.00
IUUC-Ttr-128777	Tursiops truncatus	90.44	0.00e+00	1023.00
IUUC-Uma-129568	Ustilago maydis	39.76	1.00e-97	350.00
IUUC-Vda-129834	Verticillium dahliae	43.97	5.00e-95	341.00
IUUC-Vpa-130563	Vicugna pacos	84.04	1.00e-75	278.00
IUUC-Vvi-131360	Vitis vinifera	57.03	2.00e-136	479.00
IUUC-Xtr-132630	Xenopus tropicalis	88.72	0.00e+00	1068.00
IUUC-Xma-133665	Xiphophorus maculatus	91.22	0.00e+00	1057.00
IUUC-Yli-134556	Yarrowia lipolytica	37.27	6.00e-85	308.00
IUUC-Zma-135787	Zea mays	55.38	6.00e-135	474.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence