iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099016

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

UBIQUITIN-SPECIFIC PROTEASE 4 family protein

Genbank Nucleotide ID

CM000341

Gene Name

POPTRDRAFT_760095; POPTR_0005s07640g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0005s07640	POPTR_0005s07640.1	POPTR_0005s07640.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
DUB/USP	1.80e-98	331.0	23	362

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

DUB/USP

   S: 1    tGlkNlgNtCYmNSvLQcLsnipelrelllekkkeklneenpkepkgellkslqklfeelw..kskkkavsprellkalkkeaeefsgyeq 89
           +Gl+N+gNtCY+NSvLQ+L+++ ++re lle +    n ++  + +++ll++l++lf+++   k+k+++++p+++++ lkk +e f++y++
   Q: 23   FGLENFGNTCYCNSVLQALYFCVPFREHLLE-YYG--NGKSIGDAEENLLTCLADLFTQISsqKKKTGVIAPKRFVQRLKKQNELFRSYMH 110
           6******************************.433..34456899***************98899999*********************** PP
   S: 90   qDaqEflaflldqleeelkk....eknkpkeeeeeedkselsdeaeekkkkknk...slisdlFqgqlksqikclecdnvssreepfldls 173
           qDa+Efl+fll++l + l+k     k+ p +++  e+  + +++a+ +  +k +   ++++++Fqg l+++++cl+c++v+ r+e+f+dls
   Q: 111  QDAHEFLNFLLNELVDILEKeaqaVKSDPETSSPPEKIANGPKHAQANGVSK-EplvTWVHKNFQGILTNETRCLQCETVTARDETFFDLS 200
           ******************7744433333333333333333333343333333.2477********************************** PP
   S: 174  lpvpgkeetkkeslqdcLesftkeeelegenkyycekckkkqeaekklklkklPevLilhLkRfsfseeqksrekinkkvefpleLdlspf 264
           l++++++     s+++cL++f+++e+l+ e+k++c+kc+++qea+k++k+kk P++L++hLkRf++ e+ ++ +k++ +v fpleL+ls+ 
   Q: 201  LDIEQNS-----SITSCLKNFSSTETLNAEDKFFCDKCCSLQEAQKRMKIKKPPHILVIHLKRFKYIEQLGRYKKLSYRVVFPLELKLSNT 286
           *******.....9****************************************************************************77 PP
   S: 265  ctspeekqkekkkYeLiavvvHsG.slssGHYvayvknekgkWllfdDskVtevkeeevleetg.........staYvlfYkr 337
           +++       + +Y+L+avvvH G ++++GHYv++vk+ +++Wl fdD++V+ ++e+ v+++ g         + +Y+lfY++
   Q: 287  VED------ADIEYSLFAVVVHVGsGPNHGHYVSLVKS-HNHWLFFDDENVEMIDESAVQTFFGsaqeyssntDHGYILFYES 362
           776......3799*************************.889*******************999*****************85 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MGAAGSKLEK ALGDQFPEGE RYFGLENFGN TCYCNSVLQA LYFCVPFREH LLEYYGNGKS 60
IGDAEENLLT CLADLFTQIS SQKKKTGVIA PKRFVQRLKK QNELFRSYMH QDAHEFLNFL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTTCTCTCTC TCAGAAAACC ATACTAGACA AACACAAACC CTCGTTCCTT TCCTTTCCTT 60
TCACTACCAA CAAAATCATA AACAAAATTC TCATTTCCCA AACAAACCCT AACAAACTAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0378--Hydrolase
KW-0645--Protease
KW-1185--Reference proteome

Interpro

IPR001394--Peptidase_C19_UCH
IPR018200--USP_CS
IPR028889--USP_dom

PROSITE

PS00972--USP_1
PS00973--USP_2
PS50235--USP_3

Pfam

PF00443--UCH

Gene Ontology

GO:0036459--F:thiol-dependent ubiquitinyl hydrolase activity
GO:0016579--P:protein deubiquitination
GO:0006511--P:ubiquitin-dependent protein catabolic process

KEGG

pop:POPTR_0005s07640g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002650	Amborella trichopoda	92.56	0.00e+00	707.00
IUUC-Aly-005830	Arabidopsis lyrata	89.73	0.00e+00	659.00
IUUC-Ath-007280	Arabidopsis thaliana	89.73	0.00e+00	659.00
IUUC-Afl-008602	Aspergillus flavus	49.05	1.00e-77	283.00
IUUC-Ani-009137	Aspergillus nidulans	48.10	1.00e-73	270.00
IUUC-Ang-009703	Aspergillus niger	48.42	5.00e-77	281.00
IUUC-Aor-009901	Aspergillus oryzae	49.05	9.00e-78	284.00
IUUC-Ate-010431	Aspergillus terreus	48.57	1.00e-73	270.00
IUUC-Ame-011015	Astyanax mexicanus	59.84	1.00e-125	442.00
IUUC-Bol-015138	Brassica oleracea	89.37	0.00e+00	665.00
IUUC-Cfa-020534	Canis familiaris	59.56	1.00e-124	439.00
IUUC-Cho-024902	Choloepus hoffmanni	50.14	1.00e-95	342.00
IUUC-Cin-025659	Ciona intestinalis	48.11	2.00e-102	365.00
IUUC-Cne-026900	Cryptococcus neoformans	40.00	1.00e-51	197.00
IUUC-Dre-027845	Danio rerio	59.84	1.00e-125	442.00
IUUC-Ete-033125	Echinops telfairi	49.51	4.00e-74	270.00
IUUC-Fso-038299	Fusarium solani	38.90	2.00e-77	283.00
IUUC-Gac-041967	Gasterosteus aculeatus	59.29	3.00e-126	444.00
IUUC-Gma-042927	Glycine max	94.55	0.00e+00	725.00
IUUC-Mtr-057715	Medicago truncatula	93.21	0.00e+00	721.00
IUUC-Mla-059142	Melampsora laricipopulina	51.29	2.00e-90	327.00
IUUC-Ont-072658	Oreochromis niloticus	59.29	3.00e-126	444.00
IUUC-Oin-080002	Oryza indica	86.58	0.00e+00	661.00
IUUC-Oru-084226	Oryza rufipogon	86.58	0.00e+00	662.00
IUUC-Osa-085453	Oryza sativa	86.58	0.00e+00	662.00
IUUC-Ola-087418	Oryzias latipes	59.29	3.00e-126	444.00
IUUC-Ppa-095415	Physcomitrella patens	82.02	0.00e+00	627.00
IUUC-Pfo-097052	Poecilia formosa	59.56	1.00e-126	445.00
IUUC-Ppe-101474	Prunus persica	95.10	0.00e+00	731.00
IUUC-Spo-108095	Schizosaccharomyces pombe	46.33	8.00e-72	264.00
IUUC-Sar-113216	Sorex araneus	59.18	1.00e-121	429.00
IUUC-Tsy-119520	Tarsius syrichta	50.00	3.00e-68	250.00
IUUC-Tvi-122330	Trichoderma virens	44.59	3.00e-76	279.00
IUUC-Tme-126890	Tuber melanosporum	46.20	7.00e-87	314.00
IUUC-Tbe-127783	Tupaia belangeri	59.07	4.00e-121	427.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence