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Basic Information Integrated Annotations
Tag Content
UUCD2 ID IUUC-Rno-105048
UUCD1 version UUC-RaN-01084
Ensembl Protein ID ENSRNOP00000054551.4
UniProt Accession D4A4F6; D4A4F6_RAT
Genbank Protein ID ENSRNOP00000054551
Protein Name Ubiquitinyl hydrolase 1
Genbank Nucleotide ID AABR07070484
Gene Name Usp3
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSRNOG00000017714.7 ENSRNOT00000057739.4 ENSRNOP00000054551.4
ENSRNOG00000017714.7 ENSRNOT00000080319.1 ENSRNOP00000073732.1
Annotation
mRNA Expression
GEOArrayExpress
DNA & RNA Element
TRANSFACRAID2
Post-translational Modifications (PTMs)
dbPAF
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
DUB/USP 1.40e-99 333.9 161 512
UBD/ZnF/ZnF_UBP 8.10e-26 90.4 27 106
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   DUB/USP
   S: 1    tGlkNlgNtCYmNSvLQcLsnipelrellle...........kkkeklneenpkepkgellkslqklfeelwkskkkavsprellkalk 78
           tGl+NlgNtC+mN++LQ+Lsni+++ ++++e             +++ + +++ +++ +l+++++k + +lw+++++a+sp++l+ +++
   Q: 161  TGLRNLGNTCFMNAILQSLSNIEQFCCYFKElpavelrngktAGRRTYHTRSQGDSNVSLVEEFRKTLCALWQGSQTAFSPESLFYVVW 249
           7******************************888888777775555555556688999******************************* PP
   S: 79   keaeefsgyeqqDaqEflaflldqleeelkkeknkpkeeeeeedkselsdeaeekkkkknkslisdlFqgqlksqikclecdnvssree 167
           k+ ++f+gy+qqDa+Ef+++lld+l+ el+   n    ++  +++s+l + +++   +  +++++++F+g l++++ cl c+++s +++
   Q: 250  KIMPNFRGYQQQDAHEFMRYLLDHLHLELQGGFNGVSRSAILQENSTL-SANNKCCINGASTVVTTIFGGILQNEVNCLICGTESRKFD 337
           *****************************7644444444444443334.446788999999**************************** PP
   S: 168  pfldlslpvpgkeetkke.........slqdcLesftkeeelegenkyycekckkkqeaekklklkklPevLilhLkRfsfseeqksre 247
           pfldlsl++p++  +k +         sl+dcL+sft  eel++ + y c kckkkq+++kk++++klP+ L+lhLkRf+++   + r+
   Q: 338  PFLDLSLDIPSQFRSKRSknqengpvcSLRDCLRSFTDLEELDETELYMCHKCKKKQKSTKKFWIQKLPKALCLHLKRFHWTA--YLRN 424
           **********77655555678899999****************************************************7755..799* PP
   S: 248  kinkkvefple.LdlspfctspeekqkekkkYeLiavvvHsG.slssGHYvayvknekgkWllfdDskVtevkeeevleetgstaYvlf 334
           k++++v+fpl+ Ld++ ++ +pe++  +++ Y+L avvvH+G +++sGHY+ay+ + +g+W++f+Ds+Vt+++ee+v +   ++aY+lf
   Q: 425  KVDTYVQFPLRgLDMKCYLLEPENSGPDSCLYDLAAVVVHHGsGVGSGHYTAYAVH-EGRWFHFNDSTVTVTDEETVGK---AKAYILF 509
           ********************************************************.9*********************...******* PP
   S: 335  Ykr 337
           Y +
   Q: 510  YVE 512
           *76 PP
   

   UBD/ZnF/ZnF_UBP
   S: 1    kkcsvcdktenlWlcLtcgsvgCGRyvegHalkHyeetqhpl..................vlslstlsvycYacddyvhr 62
           ++csvc++++++W+cLtc+sv+CGRyv+gHa+kHye  + pl                  ++++s++s+ycY+cdd+v++
   Q: 27   WCCSVCRSNKSPWVCLTCSSVHCGRYVNGHAKKHYEMHEIPLlnhpxkrsekqekaqhtvCMDCSSYSTYCYRCDDFVVN 106
           9*****************************************************************************85 PP
   
Organism Rattus norvegicus
Protein Sequence
(Fasta)
MECPHLSSSV CIAPDSAKFP NGSPSSWCCS VCRSNKSPWV CLTCSSVHCG RYVNGHAKKH 60
YEMHEIPLLN HPXKRSEKQE KAQHTVCMDC SSYSTYCYRC DDFVVNDTKL GLVQKVREHL 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Rno-105048|DUB,USP;UBD,ZnF_UBP|Rattus norvegicus
Please wait for a moment...
Nucleotide Sequence
(Fasta)
GCAGCCACCT TCTGCCCAGC GCCGGGTCAG AAGCGACCCC AGACGGAGCC TCCGAAGTCC 60
CTCCGCCCCA GAGCCTCGGC CGTCCCCGCC GCCGTCCTCG TGGCCATGGA GTGTCCGCAC 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Rno-105048|DUB,USP;UBD,ZnF_UBP|Rattus norvegicus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0378--Hydrolase
KW-0479--Metal-binding
KW-0645--Protease
KW-1267--Proteomics identification
KW-1185--Reference proteome
KW-0788--Thiol protease
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger
Interpro

IPR001394--Peptidase_C19_UCH
IPR018200--USP_CS
IPR028889--USP_dom
IPR013083--Znf_RING/FYVE/PHD
IPR001607--Znf_UBP
PROSITE

PS00972--USP_1
PS00973--USP_2
PS50235--USP_3
PS50271--ZF_UBP
Pfam

PF00443--UCH
PF02148--zf-UBP
SMART

SM00290--ZnF_UBP
Gene Ontology

GO:0070938--C:contractile ring
GO:0000790--C:nuclear chromatin
GO:0005654--C:nucleoplasm
GO:0005634--C:nucleus
GO:0003682--F:chromatin binding
GO:0001046--F:core promoter sequence-specific DNA binding
GO:0036459--F:thiol-dependent ubiquitinyl hydrolase activity
GO:0008270--F:zinc ion binding
GO:0006281--P:DNA repair
GO:0016578--P:histone deubiquitination
GO:0000278--P:mitotic cell cycle
GO:0000122--P:negative regulation of transcription from RNA polymerase II promoter
GO:0031647--P:regulation of protein stability
GO:0006511--P:ubiquitin-dependent protein catabolic process
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aml-001537 Ailuropoda melanoleuca 95.40 0.00e+00 930.00
IUUC-Apl-003358 Anas platyrhynchos 92.89 0.00e+00 872.00
IUUC-Aca-004454 Anolis carolinensis 89.69 0.00e+00 801.00
IUUC-Ame-011544 Astyanax mexicanus 75.83 0.00e+00 724.00
IUUC-Bta-012738 Bos taurus 94.84 0.00e+00 907.00
IUUC-Cel-018186 Caenorhabditis elegans 36.49 3.00e-54 206.00
IUUC-Cja-018893 Callithrix jacchus 95.98 0.00e+00 929.00
IUUC-Cfa-020607 Canis familiaris 95.40 0.00e+00 912.00
IUUC-Cpo-021828 Cavia porcellus 93.87 0.00e+00 899.00
IUUC-Csa-023884 Chlorocebus sabaeus 96.94 0.00e+00 767.00
IUUC-Cho-024863 Choloepus hoffmanni 85.82 0.00e+00 798.00
IUUC-Dre-028452 Danio rerio 73.66 0.00e+00 743.00
IUUC-Dno-029531 Dasypus novemcinctus 94.51 0.00e+00 847.00
IUUC-Dor-030913 Dipodomys ordii 87.20 4.00e-172 597.00
IUUC-Ete-032611 Echinops telfairi 89.27 0.00e+00 856.00
IUUC-Eca-033622 Equus caballus 94.92 0.00e+00 845.00
IUUC-Eeu-035268 Erinaceus europaeus 89.82 0.00e+00 772.00
IUUC-Fca-035801 Felis catus 94.31 0.00e+00 875.00
IUUC-Fal-036749 Ficedula albicollis 92.70 0.00e+00 832.00
IUUC-Gmo-039598 Gadus morhua 76.22 0.00e+00 761.00
IUUC-Gga-040883 Gallus gallus 93.09 0.00e+00 837.00
IUUC-Gac-042235 Gasterosteus aculeatus 74.90 0.00e+00 733.00
IUUC-Ggo-044767 Gorilla gorilla 89.66 0.00e+00 813.00
IUUC-Hsa-046581 Homo sapiens 95.21 0.00e+00 946.00
IUUC-Itr-047898 Ictidomys tridecemlineatus 95.59 0.00e+00 914.00
IUUC-Lch-049732 Latimeria chalumnae 88.46 0.00e+00 893.00
IUUC-Loc-052371 Lepisosteus oculatus 87.12 0.00e+00 884.00
IUUC-Laf-054565 Loxodonta africana 94.83 0.00e+00 908.00
IUUC-Mcc-055522 Macaca mulatta 95.59 0.00e+00 951.00
IUUC-Meu-056754 Macropus eugenii 83.65 4.00e-171 594.00
IUUC-Mga-060095 Meleagris gallopavo 92.04 1.00e-178 619.00
IUUC-Mmr-060839 Microcebus murinus 95.40 0.00e+00 911.00
IUUC-Mdo-062339 Monodelphis domestica 95.63 0.00e+00 744.00
IUUC-Mmu-063638 Mus musculus 98.28 0.00e+00 914.00
IUUC-Mpu-066647 Mustela putorius furo 96.55 0.00e+00 749.00
IUUC-Mlu-067921 Myotis lucifugus 93.50 0.00e+00 860.00
IUUC-Nle-069752 Nomascus leucogenys 95.98 0.00e+00 953.00
IUUC-Opr-070636 Ochotona princeps 81.42 0.00e+00 716.00
IUUC-Ont-071638 Oreochromis niloticus 75.37 0.00e+00 692.00
IUUC-Oan-073417 Ornithorhynchus anatinus 87.74 0.00e+00 863.00
IUUC-Ocu-074620 Oryctolagus cuniculus 94.83 0.00e+00 910.00
IUUC-Ola-087281 Oryzias latipes 77.88 2.00e-179 622.00
IUUC-Olu-087697 Ostreococcus lucimarinus 39.67 1.00e-47 183.00
IUUC-Oga-088448 Otolemur garnettii 94.83 0.00e+00 941.00
IUUC-Oar-090132 Ovis aries 94.83 0.00e+00 910.00
IUUC-Ptr-090696 Pan troglodytes 95.13 0.00e+00 885.00
IUUC-Pan-092124 Papio anubis 95.21 0.00e+00 946.00
IUUC-Psi-093801 Pelodiscus sinensis 94.25 0.00e+00 736.00
IUUC-Pma-094472 Petromyzon marinus 71.74 7.00e-93 332.00
IUUC-Pfo-096330 Poecilia formosa 76.58 0.00e+00 770.00
IUUC-Pab-098191 Pongo abelii 95.79 0.00e+00 952.00
IUUC-Pca-100341 Procavia capensis 94.33 0.00e+00 708.00
IUUC-Pva-103177 Pteropus vampyrus 94.83 0.00e+00 899.00
IUUC-Sha-107429 Sarcophilus harrisii 93.39 0.00e+00 842.00
IUUC-Sar-113024 Sorex araneus 93.63 0.00e+00 793.00
IUUC-Ssc-115749 Sus scrofa 95.37 6.00e-150 523.00
IUUC-Tgu-117277 Taeniopygia guttata 92.89 0.00e+00 870.00
IUUC-Tru-117844 Takifugu rubripes 77.63 0.00e+00 766.00
IUUC-Tsy-119456 Tarsius syrichta 93.48 0.00e+00 847.00
IUUC-Tni-120251 Tetraodon nigroviridis 73.56 0.00e+00 781.00
IUUC-Tbe-127423 Tupaia belangeri 90.23 0.00e+00 836.00
IUUC-Ttr-128401 Tursiops truncatus 87.98 0.00e+00 763.00
IUUC-Vpa-130549 Vicugna pacos 86.31 9.00e-160 555.00
IUUC-Xtr-131892 Xenopus tropicalis 80.91 0.00e+00 781.00
Created Date 25-Jun-2017

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