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Basic Information Integrated Annotations
Tag Content
UUCD2 ID IUUC-Rno-105735
UUCD1 version UUC-RaN-01109
Ensembl Protein ID ENSRNOP00000009724.5
UniProt Accession A0A140TAA0; A0A140TAA0_RAT
Genbank Protein ID ENSRNOP00000009724
Protein Name Ubiquitin carboxyl-terminal hydrolase 28
Genbank Nucleotide ID AC097700
Gene Name Usp28
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSRNOG00000007325.8 ENSRNOT00000009724.7 ENSRNOP00000009724.5
ENSRNOG00000007325.8 ENSRNOT00000067420.4 ENSRNOP00000060005.3
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpress
DNA & RNA Element
TRANSFACRAID2
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
DUB/USP 4.50e-58 197.4 162 654
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   DUB/USP
   S: 1    tGlkNlgNtCYmNSvLQcLsnipelrellle.....kkkeklneenpkepkgellkslqklfeelwkskkkavsprellkalkkeaeef 84
           +GlkN+gNtC++ +v+Q+L+++pe+r+l+l+     +  e+++    ++++  ++++lq lf+ l+ s++k v+p++ l+ lk + ++ 
   Q: 162  VGLKNVGNTCWFSAVIQSLFQLPEFRRLVLSyslpqNILENCRSH-TEKRNIMFMQELQYLFALLLGSNRKFVDPSAALDLLKGAFRS- 248
           6******************************96665455555443.478888*******************************99987. PP
   S: 85   sgyeqqDaqEflaflldqleeelkkeknkpkeeeeeedkselsdeaeekkkkknkslisdlFqgqlksqikclecdnvssreepfldls 173
           s+ +qqD++Ef++ lld le+++                 +l  + ++++ +k+++++++lF g++ ++ + +        +e+f +++
   Q: 249  SEEQQQDVSEFTHKLLDWLEDAF-----------------QLAVNVNSNPRTKSENPMVQLFYGTFLTEGVREGKPFC--NNETFGQYP 318
           99*********************.................566677889******************99998665555..5899***** PP
   S: 174  lpvpgkeetkkeslqdcLesftkeeelegenkyycekckkkqeaekklklkklPevLilhLkRfsfseeqksrekinkkvefpleLdls 262
           l+v+g +     +l++cLe      ++eg+ ++  +    +++  ++ +++klP+vL+++L+Rf+f+++ +++eki++k+efp+ + ++
   Q: 319  LQVNGYH-----NLDECLEG----AMVEGDIALLPSDR--SVKYGQERWFTKLPPVLTFELSRFEFNQSLGQPEKIHNKLEFPQVIYMD 396
           *******.....99***965....56666666666654..56678899***************************************** PP
   S: 263  pfcts.................................................................................... 267
           +++ +                                                                                    
   Q: 397  RYMYKskelirskresirklkeeiqvlqqkleryvkygsgpsrfplpdmlkyviefastkpasesclsgsvehmtlplpsvhcpisdlt 485
           **999778888877777777777777777777777777777777777777777777777777766666666666666666666666666 PP
   S: 268  ......peekqke............................................................................ 274
                 p     +                                                                            
   Q: 486  akesssP-----Kscsqnaegsfsspedalpnsevmngpftsphsslempapppaprtvtdeemnfvktclqrwrseieqdiqdlknci 569
           6655550.....04555555666666666666666667777777777777777777777777788888888888888888888888999 PP
   S: 275  .................kkkYeLiavvvHsGslssGHYvayvknekgk.WllfdDskVtevkeeevleetg.....staYvlfYk 336
                            ++ Y+L+av+vH+G++s GHY+ay++n+ ++ Wl+++D +Vte+++ee ++++       +aY+l+Y 
   Q: 570  ssttqaieqmycdpllrQVPYRLHAVLVHEGQASAGHYWAYIYNQPRQiWLKYNDISVTESSWEELERDSYgglrnVSAYCLMYI 654
           99999999999999999***************************99999*******************8879************6 PP
   
Organism Rattus norvegicus
Protein Sequence
(Fasta)
MTAELQQDDA AGAADGHGSS CQMLLNQLRE ITGIQDPSFL HEALKASNGD ITQAVSLLTD 60
QRVKEPSHDT AATEPSEVEE SATSKDLLAK VIDLTHDNKD DLQAAIALSL LESPNIQTDS 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Rno-105735|DUB,USP|Rattus norvegicus
Please wait for a moment...
Nucleotide Sequence
(Fasta)
CGGCGGTGGT GGCGGTGGTG ACCGCGGCGA AGACGACAAC GAGAGTGGGG CTACACGCGG 60
AGGCACCACG GCCATGACTG CGGAGCTGCA GCAGGACGAC GCGGCGGGGG CGGCGGACGG 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Rno-105735|DUB,USP|Rattus norvegicus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome
Interpro

IPR001394--Peptidase_C19_UCH
IPR009060--UBA-like
IPR018200--USP_CS
IPR028889--USP_dom
PROSITE

PS00972--USP_1
PS00973--USP_2
PS50235--USP_3
Pfam

PF00443--UCH
Gene Ontology

GO:0016604--C:nuclear body
GO:0043234--C:protein complex
GO:0004843--F:thiol-dependent ubiquitin-specific protease activity
GO:0008283--P:cell proliferation
GO:0034644--P:cellular response to UV
GO:0000077--P:DNA damage checkpoint
GO:0042771--P:intrinsic apoptotic signaling pathway in response to DNA damage by p53 class mediator
GO:0016579--P:protein deubiquitination
GO:0007265--P:Ras protein signal transduction
GO:0031647--P:regulation of protein stability
GO:0010212--P:response to ionizing radiation
GO:0006511--P:ubiquitin-dependent protein catabolic process
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aml-001836 Ailuropoda melanoleuca 84.44 0.00e+00 1889.00
IUUC-Apl-004010 Anas platyrhynchos 63.86 0.00e+00 1379.00
IUUC-Aca-004741 Anolis carolinensis 61.14 0.00e+00 1326.00
IUUC-Afl-008717 Aspergillus flavus 45.83 2.00e-10 62.00
IUUC-Ani-009503 Aspergillus nidulans 36.19 2.00e-11 65.10
IUUC-Ang-009577 Aspergillus niger 37.37 2.00e-12 68.60
IUUC-Ate-010275 Aspergillus terreus 37.04 2.00e-12 68.60
IUUC-Ame-011910 Astyanax mexicanus 43.71 7.00e-179 622.00
IUUC-Bta-013377 Bos taurus 83.22 0.00e+00 1816.00
IUUC-Cja-019977 Callithrix jacchus 85.13 0.00e+00 1882.00
IUUC-Cfa-020378 Canis familiaris 89.50 0.00e+00 1997.00
IUUC-Cpo-021817 Cavia porcellus 82.31 0.00e+00 1830.00
IUUC-Csa-023446 Chlorocebus sabaeus 90.66 0.00e+00 2041.00
IUUC-Cho-024717 Choloepus hoffmanni 73.18 0.00e+00 1115.00
IUUC-Cme-027167 Cyanidioschyzon merolae 31.53 5.00e-15 77.00
IUUC-Dor-030955 Dipodomys ordii 81.82 0.00e+00 1813.00
IUUC-Ete-032828 Echinops telfairi 80.84 0.00e+00 766.00
IUUC-Eca-034300 Equus caballus 83.36 0.00e+00 1796.00
IUUC-Eeu-034458 Erinaceus europaeus 79.19 0.00e+00 1576.00
IUUC-Fca-035753 Felis catus 84.80 0.00e+00 1899.00
IUUC-Fal-037062 Ficedula albicollis 66.70 0.00e+00 1407.00
IUUC-Gac-041867 Gasterosteus aculeatus 53.87 0.00e+00 1130.00
IUUC-Ggo-045384 Gorilla gorilla 85.04 0.00e+00 1885.00
IUUC-Hsa-046277 Homo sapiens 85.13 0.00e+00 1881.00
IUUC-Itr-048276 Ictidomys tridecemlineatus 83.82 5.00e-171 594.00
IUUC-Lch-049692 Latimeria chalumnae 61.93 0.00e+00 1318.00
IUUC-Loc-052636 Lepisosteus oculatus 62.51 0.00e+00 1363.00
IUUC-Laf-053808 Loxodonta africana 83.91 0.00e+00 1233.00
IUUC-Mcc-055473 Macaca mulatta 90.66 0.00e+00 2040.00
IUUC-Meu-056416 Macropus eugenii 67.17 0.00e+00 1396.00
IUUC-Mga-060011 Meleagris gallopavo 61.54 0.00e+00 1313.00
IUUC-Mmr-060720 Microcebus murinus 82.96 0.00e+00 1783.00
IUUC-Mdo-061955 Monodelphis domestica 84.04 0.00e+00 1834.00
IUUC-Mmu-063870 Mus musculus 95.23 0.00e+00 1476.00
IUUC-Mpu-066454 Mustela putorius furo 89.15 0.00e+00 1916.00
IUUC-Mlu-067487 Myotis lucifugus 78.95 0.00e+00 1739.00
IUUC-Nle-070044 Nomascus leucogenys 84.95 0.00e+00 1878.00
IUUC-Opr-070888 Ochotona princeps 95.67 3.00e-159 556.00
IUUC-Ocu-074523 Oryctolagus cuniculus 81.78 0.00e+00 1795.00
IUUC-Ola-086393 Oryzias latipes 52.30 0.00e+00 1093.00
IUUC-Oga-088618 Otolemur garnettii 82.83 0.00e+00 1818.00
IUUC-Oar-089848 Ovis aries 88.17 0.00e+00 1944.00
IUUC-Ptr-091630 Pan troglodytes 82.92 0.00e+00 1413.00
IUUC-Pan-092882 Papio anubis 90.08 0.00e+00 1500.00
IUUC-Psi-093422 Pelodiscus sinensis 71.63 0.00e+00 1592.00
IUUC-Pma-094250 Petromyzon marinus 51.71 3.00e-80 291.00
IUUC-Pno-095093 Phaeosphaeria nodorum 30.50 1.00e-12 68.90
IUUC-Pab-098337 Pongo abelii 84.86 0.00e+00 1872.00
IUUC-Pca-100901 Procavia capensis 70.54 0.00e+00 1506.00
IUUC-Pva-102226 Pteropus vampyrus 77.70 0.00e+00 1587.00
IUUC-Sha-107489 Sarcophilus harrisii 78.88 0.00e+00 1750.00
IUUC-Ssl-108532 Sclerotinia sclerotiorum 34.57 1.00e-09 59.30
IUUC-Sar-112977 Sorex araneus 71.13 0.00e+00 770.00
IUUC-Sre-115145 Sporisorium reilianum 25.70 2.00e-11 65.90
IUUC-Ssc-115463 Sus scrofa 85.35 0.00e+00 1037.00
IUUC-Tgu-116609 Taeniopygia guttata 62.72 0.00e+00 1305.00
IUUC-Tsy-118971 Tarsius syrichta 94.04 2.00e-180 626.00
IUUC-Ttr-128887 Tursiops truncatus 78.76 0.00e+00 1710.00
IUUC-Vda-129742 Verticillium dahliae 25.41 3.00e-13 71.20
IUUC-Vpa-130614 Vicugna pacos 81.27 0.00e+00 1391.00
Created Date 25-Jun-2017

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