iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Xtr-131763

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

PHD finger protein 21A

Genbank Nucleotide ID

AAMC01029994

Gene Name

phf21a

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSXETG00000001031.3	ENSXETT00000002259.3	ENSXETP00000002259.3

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/PHD	8.10e-11	42.1	437	482

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/PHD

   S: 2    kvClvCgeggedekslveCekCrewfHpaClklsveeelpnsekwiCpkCrs 53
           ++C +C+++g+    l++C+ C++++H +Cl+++  ++ p+   wiCpkC++
   Q: 437  DFCSICRKSGQ----LLMCDTCSRVYHLDCLEPP-LKTIPKGM-WICPKCQD 482
           79*********....*******************.*******7.******85 PP

Organism

Xenopus tropicalis

Protein Sequence
(Fasta)

QRLVVEQLRK NLIVKQELPD NKLLIQPLLQ LESKPPTPQV QQQPQQIQLQ QLQSQTVSHA 60
PTVSLPGFSG SQKTVATASM ITAKTLPLVL KAAAAAMPAS VIGQRPTIAM VTAINSQKAV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CAGAGACTGG TAGTAGAACA ACTTCGGAAA AATCTGATAG TCAAACAGGA ACTCCCAGAC 60
AACAAACTTC TCATTCAGCC TCTCCTCCAG CTAGAAAGCA AGCCACCAAC ACCACAAGTG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR019786--Zinc_finger_PHD-type_CS
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS01359--ZF_PHD_1
PS50016--ZF_PHD_2

Pfam

PF00628--PHD

SMART

SM00249--PHD

Gene Ontology

GO:0000118--C:histone deacetylase complex
GO:0003682--F:chromatin binding
GO:0042393--F:histone binding
GO:0000977--F:RNA polymerase II regulatory region sequence-specific DNA binding
GO:0003712--F:transcription cofactor activity
GO:0008270--F:zinc ion binding
GO:0006355--P:regulation of transcription, DNA-templated

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001656	Ailuropoda melanoleuca	77.50	0.00e+00	765.00
IUUC-Apl-003874	Anas platyrhynchos	77.95	0.00e+00	784.00
IUUC-Aca-004684	Anolis carolinensis	79.89	6.00e-173	600.00
IUUC-Ame-010638	Astyanax mexicanus	59.95	6.00e-117	414.00
IUUC-Bgr-012025	Blumeria graminis	36.07	4.00e-09	57.40
IUUC-Bta-013460	Bos taurus	77.97	0.00e+00	768.00
IUUC-Cja-019170	Callithrix jacchus	77.53	0.00e+00	769.00
IUUC-Cfa-020760	Canis familiaris	77.40	0.00e+00	763.00
IUUC-Cpo-021549	Cavia porcellus	74.17	0.00e+00	737.00
IUUC-Csa-023461	Chlorocebus sabaeus	77.23	0.00e+00	692.00
IUUC-Cne-026966	Cryptococcus neoformans	46.43	2.00e-11	63.50
IUUC-Dre-027928	Danio rerio	50.64	1.00e-115	410.00
IUUC-Dno-029450	Dasypus novemcinctus	76.60	0.00e+00	661.00
IUUC-Dor-030699	Dipodomys ordii	74.02	0.00e+00	767.00
IUUC-Ete-033073	Echinops telfairi	76.01	4.00e-162	564.00
IUUC-Eca-033822	Equus caballus	73.73	0.00e+00	765.00
IUUC-Fca-035562	Felis catus	77.07	0.00e+00	754.00
IUUC-Fal-037269	Ficedula albicollis	77.95	0.00e+00	783.00
IUUC-Gmo-038592	Gadus morhua	52.78	1.00e-114	406.00
IUUC-Gga-040795	Gallus gallus	78.28	0.00e+00	786.00
IUUC-Gac-042224	Gasterosteus aculeatus	56.18	9.00e-142	496.00
IUUC-Ggo-045327	Gorilla gorilla	74.65	0.00e+00	769.00
IUUC-Hsa-046675	Homo sapiens	74.76	0.00e+00	774.00
IUUC-Itr-048946	Ictidomys tridecemlineatus	75.59	3.00e-146	511.00
IUUC-Lch-050609	Latimeria chalumnae	66.72	8.00e-173	600.00
IUUC-Loc-052407	Lepisosteus oculatus	66.54	4.00e-170	591.00
IUUC-Laf-053876	Loxodonta africana	74.68	0.00e+00	764.00
IUUC-Mcc-054954	Macaca mulatta	72.10	0.00e+00	723.00
IUUC-Meu-056821	Macropus eugenii	69.49	0.00e+00	702.00
IUUC-Mtr-058324	Medicago truncatula	44.83	6.00e-11	62.80
IUUC-Mga-059320	Meleagris gallopavo	78.62	0.00e+00	788.00
IUUC-Mmr-061278	Microcebus murinus	69.59	0.00e+00	710.00
IUUC-Mdo-062891	Monodelphis domestica	72.01	0.00e+00	758.00
IUUC-Mmu-063907	Mus musculus	73.52	0.00e+00	739.00
IUUC-Mac-065599	Musa acuminata	43.66	5.00e-12	66.20
IUUC-Mpu-065839	Mustela putorius furo	76.73	0.00e+00	754.00
IUUC-Mlu-068142	Myotis lucifugus	74.13	0.00e+00	767.00
IUUC-Nle-069423	Nomascus leucogenys	74.80	0.00e+00	771.00
IUUC-Opr-070236	Ochotona princeps	71.05	0.00e+00	640.00
IUUC-Ont-071327	Oreochromis niloticus	67.67	7.00e-90	324.00
IUUC-Oan-073405	Ornithorhynchus anatinus	79.81	0.00e+00	726.00
IUUC-Ocu-074391	Oryctolagus cuniculus	75.79	0.00e+00	759.00
IUUC-Ola-086548	Oryzias latipes	54.45	1.00e-135	476.00
IUUC-Oga-088488	Otolemur garnettii	74.49	0.00e+00	766.00
IUUC-Oar-090334	Ovis aries	77.57	0.00e+00	765.00
IUUC-Ptr-091018	Pan troglodytes	74.76	0.00e+00	774.00
IUUC-Psi-093596	Pelodiscus sinensis	80.92	0.00e+00	715.00
IUUC-Pma-094616	Petromyzon marinus	60.07	2.00e-89	322.00
IUUC-Pfo-097233	Poecilia formosa	56.20	9.00e-123	434.00
IUUC-Pab-097801	Pongo abelii	74.33	0.00e+00	768.00
IUUC-Pop-099691	Populus trichocarpa	42.03	2.00e-11	64.70
IUUC-Ppe-101956	Prunus persica	45.59	5.00e-13	69.70
IUUC-Pva-102419	Pteropus vampyrus	74.84	0.00e+00	769.00
IUUC-Rno-104900	Rattus norvegicus	72.85	0.00e+00	755.00
IUUC-Sha-107328	Sarcophilus harrisii	75.46	0.00e+00	753.00
IUUC-Sar-113573	Sorex araneus	78.95	4.00e-162	564.00
IUUC-Ssc-115924	Sus scrofa	80.77	0.00e+00	734.00
IUUC-Tgu-117422	Taeniopygia guttata	78.45	0.00e+00	787.00
IUUC-Tru-118697	Takifugu rubripes	56.46	7.00e-118	417.00
IUUC-Tsy-119092	Tarsius syrichta	81.76	2.00e-132	466.00
IUUC-Tni-120185	Tetraodon nigroviridis	57.20	2.00e-123	436.00
IUUC-Tme-127204	Tuber melanosporum	46.94	4.00e-13	70.50
IUUC-Ttr-128860	Tursiops truncatus	74.92	0.00e+00	763.00
IUUC-Vpa-130333	Vicugna pacos	71.91	0.00e+00	735.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence