iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Vda-129834

Ensembl Protein ID

EGY14955

UniProt Accession

G2X7I7; G2X7I7_VERDV

Genbank Protein ID

EGY14955.1

Protein Name

Polyadenylation factor subunit 2

Genbank Nucleotide ID

DS572706

Gene Name

VDAG_06445

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
VDAG_06445	EGY14955	EGY14955

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.60e-28	96.0	244	274
UBD/Beta-Prp	1.10e-46	158.4	194	350

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 8    claf.sd.tllvsGsdDgtikvWDlrtgvll 36
           ++++ +  +llvsGs D+ +k+WD+rtg++l
   Q: 244  SCDWhPYkGLLVSGSKDHLVKLWDPRTGRCL 274
           789*98889********************97 PP

UBD/Beta-Prp

   S: 7    ghhksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfsp.sg 106
           ++h+++i++++f+p++s ++t+++d+++k++d+  g   + l+gh    ++++++p + +lv+gs+D+++k+wd++tg c+ tl+gh+++++ + f + +g
   Q: 194  TAHSDPIRDLAFAPNDSKFVTACDDSSLKIFDFAGGVEESVLKGHGWDAKSCDWHPYKGLLVSGSKDHLVKLWDPRTGRCLTTLHGHKNTITKTLFEKvQG 294
           6899**********************************************************************************************999 PP
   S: 107  dklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrtvr 162
           d l++  +d+t+rv+dl+    +  +l+gh++ ++++++hp+  nll +G+ D+ + 
   Q: 295  DCLATSARDQTARVFDLRMMRDVC-LLKGHEKDISTLTWHPQHaNLLTTGGHDGSLH 350
           *******************99999.9***************************9876 PP

Organism

Verticillium dahliae

Protein Sequence
(Fasta)

MARATTRFTS SCHWRHSVMA YEPRGDYSRR GGPDGDDLHQ PRAVRGRRPV TDYGATVSQW 60
MRDRNPGTGF FSNDEAEKPS ASYICDFHPP ATTTGDLHDA LPVKHLHSSL NKIKHPVNVV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCCCGTG CCACGACGCG CTTCACTTCC TCTTGTCATT GGCGACGTGC CTGGGCCTTG 60
TAGCCCAAAG AAGGGCTCAT CTTCAAGAGC TTAGGATATT GTCCATCACC ACATCTCATC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0005829--C:cytosol
GO:0005847--C:mRNA cleavage and polyadenylation specificity factor complex
GO:0000790--C:nuclear chromatin
GO:0006378--P:mRNA polyadenylation
GO:0098789--P:pre-mRNA cleavage required for polyadenylation

KEGG

vda:VDAG_06445

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001064	Aegilops tauschii	38.08	1.00e-83	302.00
IUUC-Aml-001363	Ailuropoda melanoleuca	43.97	8.00e-96	343.00
IUUC-Atr-003030	Amborella trichopoda	41.16	6.00e-88	316.00
IUUC-Apl-003409	Anas platyrhynchos	43.75	1.00e-93	337.00
IUUC-Aca-004694	Anolis carolinensis	43.97	2.00e-95	342.00
IUUC-Aly-006063	Arabidopsis lyrata	41.67	4.00e-92	330.00
IUUC-Ath-006583	Arabidopsis thaliana	43.72	2.00e-91	328.00
IUUC-Ago-007805	Ashbya gossypii	44.20	2.00e-92	330.00
IUUC-Acl-008075	Aspergillus clavatus	60.39	5.00e-156	542.00
IUUC-Afl-008582	Aspergillus flavus	61.79	2.00e-150	523.00
IUUC-Afu-008817	Aspergillus fumigatus	60.60	5.00e-137	479.00
IUUC-Ani-009391	Aspergillus nidulans	58.78	5.00e-147	512.00
IUUC-Ang-009750	Aspergillus niger	60.00	4.00e-111	392.00
IUUC-Aor-010085	Aspergillus oryzae	62.05	9.00e-157	545.00
IUUC-Ate-010397	Aspergillus terreus	57.49	1.00e-156	545.00
IUUC-Ame-010741	Astyanax mexicanus	49.16	3.00e-63	235.00
IUUC-Bgr-012169	Blumeria graminis	74.35	3.00e-170	589.00
IUUC-Bta-013265	Bos taurus	43.97	2.00e-95	342.00
IUUC-Bci-013762	Botrytis cinerea	75.72	0.00e+00	670.00
IUUC-Bdi-014849	Brachypodium distachyon	40.05	1.00e-91	328.00
IUUC-Bol-015325	Brassica oleracea	41.90	6.00e-92	330.00
IUUC-Bra-017064	Brassica rapa	42.67	4.00e-93	333.00
IUUC-Cel-018378	Caenorhabditis elegans	47.67	5.00e-92	330.00
IUUC-Cja-019547	Callithrix jacchus	43.97	7.00e-96	343.00
IUUC-Cfa-020031	Canis familiaris	43.97	1.00e-95	343.00
IUUC-Cpo-021554	Cavia porcellus	43.94	2.00e-95	342.00
IUUC-Cre-022830	Chlamydomonas reinhardtii	34.24	2.00e-58	218.00
IUUC-Csa-023146	Chlorocebus sabaeus	43.72	2.00e-95	342.00
IUUC-Cho-024679	Choloepus hoffmanni	46.18	1.00e-88	320.00
IUUC-Cin-025415	Ciona intestinalis	42.86	3.00e-85	307.00
IUUC-Csv-026003	Ciona savignyi	40.76	9.00e-86	308.00
IUUC-Cgl-026391	Colletotrichum gloeosporioides	85.31	0.00e+00	710.00
IUUC-Cne-026983	Cryptococcus neoformans	40.53	2.00e-84	305.00
IUUC-Cme-027147	Cyanidioschyzon merolae	41.52	6.00e-94	336.00
IUUC-Dre-028545	Danio rerio	42.96	8.00e-94	337.00
IUUC-Dno-029677	Dasypus novemcinctus	43.97	7.00e-96	343.00
IUUC-Dse-031371	Dothistroma septosporum	58.27	9.00e-137	478.00
IUUC-Dme-031663	Drosophila melanogaster	40.00	3.00e-92	331.00
IUUC-Ete-032511	Echinops telfairi	37.19	2.00e-72	266.00
IUUC-Eca-034152	Equus caballus	43.97	1.00e-95	343.00
IUUC-Eeu-034560	Erinaceus europaeus	33.51	3.00e-27	115.00
IUUC-Fca-035820	Felis catus	43.97	1.00e-95	343.00
IUUC-Fox-037958	Fusarium oxysporum	77.22	0.00e+00	699.00
IUUC-Fso-038162	Fusarium solani	78.42	0.00e+00	679.00
IUUC-Gmo-039708	Gadus morhua	44.00	6.00e-95	340.00
IUUC-Ggr-040031	Gaeumannomyces graminis	68.55	2.00e-169	587.00
IUUC-Gga-040963	Gallus gallus	43.97	2.00e-95	342.00
IUUC-Gac-041541	Gasterosteus aculeatus	43.25	7.00e-92	330.00
IUUC-Gma-044352	Glycine max	40.82	4.00e-93	333.00
IUUC-Ggo-045564	Gorilla gorilla	43.97	9.00e-96	343.00
IUUC-Hsa-045833	Homo sapiens	43.97	1.00e-95	343.00
IUUC-Hvu-047848	Hordeum vulgare	40.21	1.00e-67	248.00
IUUC-Itr-048083	Ictidomys tridecemlineatus	43.97	1.00e-95	343.00
IUUC-Kpa-049308	Komagataella pastoris	48.79	2.00e-111	393.00
IUUC-Lch-050525	Latimeria chalumnae	44.25	2.00e-94	339.00
IUUC-Lpe-051364	Leersia perrieri	35.38	2.00e-74	271.00
IUUC-Loc-052696	Lepisosteus oculatus	45.33	2.00e-93	336.00
IUUC-Lma-052951	Leptosphaeria maculans	69.73	6.00e-168	582.00
IUUC-Laf-053653	Loxodonta africana	43.97	4.00e-95	341.00
IUUC-Mcc-055797	Macaca mulatta	43.97	9.00e-96	343.00
IUUC-Meu-056331	Macropus eugenii	50.38	1.00e-78	286.00
IUUC-Mor-057168	Magnaporthe oryzae	72.52	0.00e+00	640.00
IUUC-Mpo-057510	Magnaporthe poae	67.05	1.00e-109	387.00
IUUC-Mtr-058032	Medicago truncatula	41.91	3.00e-93	334.00
IUUC-Mla-058852	Melampsora laricipopulina	43.10	4.00e-101	360.00
IUUC-Mga-059311	Meleagris gallopavo	43.97	3.00e-95	342.00
IUUC-Mvi-060544	Microbotryum violaceum	45.19	6.00e-102	362.00
IUUC-Mmr-061143	Microcebus murinus	43.97	1.00e-95	343.00
IUUC-Mdo-061977	Monodelphis domestica	43.97	2.00e-95	342.00
IUUC-Mmu-063922	Mus musculus	43.97	1.00e-95	343.00
IUUC-Mac-064961	Musa acuminata	41.58	5.00e-94	337.00
IUUC-Mpu-066079	Mustela putorius furo	47.23	2.00e-91	329.00
IUUC-Mlu-067247	Myotis lucifugus	43.97	4.00e-96	344.00
IUUC-Nfi-068255	Neosartorya fischeri	62.22	8.00e-145	505.00
IUUC-Ncr-068909	Neurospora crassa	72.33	0.00e+00	658.00
IUUC-Nle-068994	Nomascus leucogenys	43.97	9.00e-96	343.00
IUUC-Opr-071079	Ochotona princeps	43.97	7.00e-96	343.00
IUUC-Ont-071971	Oreochromis niloticus	43.22	1.00e-93	336.00
IUUC-Oan-073135	Ornithorhynchus anatinus	46.17	2.00e-94	338.00
IUUC-Ocu-073982	Oryctolagus cuniculus	43.97	1.00e-95	343.00
IUUC-Oba-075297	Oryza barthii	35.87	2.00e-77	281.00
IUUC-Obr-076641	Oryza brachyantha	39.60	2.00e-90	325.00
IUUC-Ogl-077539	Oryza glaberrima	40.55	4.00e-69	253.00
IUUC-Ogu-078807	Oryza glumaepatula	35.87	2.00e-77	281.00
IUUC-Oin-079229	Oryza indica	39.80	2.00e-91	328.00
IUUC-Olo-080371	Oryza longistaminata	35.59	8.00e-77	279.00
IUUC-Ome-081149	Oryza meridionalis	35.63	1.00e-76	278.00
IUUC-Oni-082970	Oryza nivara	35.87	2.00e-77	281.00
IUUC-Opu-083415	Oryza punctata	35.63	8.00e-75	273.00
IUUC-Oru-085236	Oryza rufipogon	35.87	2.00e-77	281.00
IUUC-Ola-087421	Oryzias latipes	43.47	1.00e-94	338.00
IUUC-Olu-087821	Ostreococcus lucimarinus	42.30	8.00e-89	318.00
IUUC-Oga-088132	Otolemur garnettii	43.97	1.00e-95	343.00
IUUC-Oar-089513	Ovis aries	43.97	2.00e-95	342.00
IUUC-Ptr-090717	Pan troglodytes	43.97	9.00e-96	343.00
IUUC-Pan-092108	Papio anubis	43.97	1.00e-95	343.00
IUUC-Psi-093892	Pelodiscus sinensis	43.97	5.00e-95	341.00
IUUC-Pma-094561	Petromyzon marinus	44.47	4.00e-96	344.00
IUUC-Pno-094943	Phaeosphaeria nodorum	65.51	6.00e-168	582.00
IUUC-Ppa-095359	Physcomitrella patens	41.91	9.00e-96	342.00
IUUC-Pfo-096516	Poecilia formosa	43.86	5.00e-93	333.00
IUUC-Pab-097759	Pongo abelii	43.97	9.00e-96	343.00
IUUC-Pop-099553	Populus trichocarpa	41.42	1.00e-92	332.00
IUUC-Ppe-101957	Prunus persica	42.08	5.00e-95	340.00
IUUC-Pva-102918	Pteropus vampyrus	43.97	1.00e-95	343.00
IUUC-Pgr-103594	Puccinia graminis	45.52	1.00e-106	378.00
IUUC-Ptt-103879	Puccinia triticina	48.49	1.00e-93	335.00
IUUC-Pte-104419	Pyrenophora teres	66.90	6.00e-174	602.00
IUUC-Pyt-104718	Pyrenophora triticirepentis	68.40	5.00e-166	575.00
IUUC-Rno-105838	Rattus norvegicus	43.97	1.00e-95	343.00
IUUC-Sce-106331	Saccharomyces cerevisiae	45.40	1.00e-93	334.00
IUUC-Sha-107435	Sarcophilus harrisii	43.97	2.00e-95	342.00
IUUC-Sja-107796	Schizosaccharomyces japonicus	51.13	8.00e-119	418.00
IUUC-Spo-108163	Schizosaccharomyces pombe	51.74	5.00e-122	429.00
IUUC-Smo-109602	Selaginella moellendorffii	44.50	3.00e-97	346.00
IUUC-Sit-109729	Setaria italica	39.56	2.00e-89	321.00
IUUC-Sly-111679	Solanum lycopersicum	40.75	4.00e-93	333.00
IUUC-Sar-113157	Sorex araneus	43.97	1.00e-95	343.00
IUUC-Sbi-114853	Sorghum bicolor	38.68	4.00e-88	317.00
IUUC-Sre-115085	Sporisorium reilianum	48.20	6.00e-94	336.00
IUUC-Ssc-116286	Sus scrofa	43.61	1.00e-93	336.00
IUUC-Tgu-117219	Taeniopygia guttata	43.72	4.00e-95	341.00
IUUC-Tru-117550	Takifugu rubripes	43.72	2.00e-94	338.00
IUUC-Tsy-119294	Tarsius syrichta	43.97	8.00e-96	343.00
IUUC-Tni-120561	Tetraodon nigroviridis	43.50	3.00e-94	338.00
IUUC-Tca-121347	Theobroma cacao	41.83	3.00e-94	337.00
IUUC-Tre-122018	Trichoderma reesei	75.57	0.00e+00	664.00
IUUC-Tvi-122413	Trichoderma virens	74.54	0.00e+00	661.00
IUUC-Tae-123191	Triticum aestivum	39.56	1.00e-89	322.00
IUUC-Tme-127077	Tuber melanosporum	64.47	4.00e-148	516.00
IUUC-Tbe-127744	Tupaia belangeri	46.07	5.00e-47	181.00
IUUC-Ttr-128777	Tursiops truncatus	38.80	9.00e-72	263.00
IUUC-Uma-129568	Ustilago maydis	46.85	9.00e-91	325.00
IUUC-Vvi-131360	Vitis vinifera	41.44	2.00e-93	335.00
IUUC-Xtr-132630	Xenopus tropicalis	43.97	2.00e-95	342.00
IUUC-Xma-133665	Xiphophorus maculatus	43.72	2.00e-94	338.00
IUUC-Yli-134556	Yarrowia lipolytica	44.81	1.00e-102	365.00
IUUC-Zma-135787	Zea mays	38.77	1.00e-89	322.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence