iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Pop-099324

Ensembl Protein ID

POPTR_0009s12380.1

UniProt Accession

B9HRI7; B9HRI7_POPTR

Genbank Protein ID

EEE87726.1

Protein Name

SHORT LIFE family protein

Genbank Nucleotide ID

CM000345

Gene Name

POPTRDRAFT_821156; POPTR_0009s12380g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0009s12380	POPTR_0009s12380.1	POPTR_0009s12380.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/PHD	1.10e-09	39.5	141	189

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/PHD

   S: 3    vClvCgeggedekslveCekCrewfHpaClklsveeelpnsekwiCpkCrs 53
           +C  C+ +++ ++ +v+Ce+C++wfHpaC ++s+ee ++ ++ ++C++C+s
   Q: 141  YC-KCEMPYNPDDLMVQCEICSDWFHPACIEMSAEEAKRLDH-FFCENCSS 189
           78.7*****************************888888887.******87 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MAKAKAPRRT LDSYTVKPIN KIVKPGDCVL LRPSDPSTPS YVAKIERIES DGRGANARVH 60
VRWYYRPEES IGGRRQFHGS KEVFFSDHYD IQSADTIEGK CTVHSFKSYT KLDAVGNDDF 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AATAAGGGGA CAACCTTTGT GTTTAATATC TTCTCTCTCC TCCACAATCT CTTTCTTGTC 60
TGTGTGCATG ACCTTGTTTA CACACCACTT CCATGGCCAA AGCTAAAGCA CCAAGACGCA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001025--BAH_dom
IPR019786--Zinc_finger_PHD-type_CS
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51038--BAH
PS01359--ZF_PHD_1
PS50016--ZF_PHD_2

Pfam

PF01426--BAH
PF00628--PHD

SMART

SM00439--BAH
SM00249--PHD

Gene Ontology

GO:0000785--C:chromatin
GO:0005677--C:chromatin silencing complex
GO:0003682--F:chromatin binding
GO:0000976--F:transcription regulatory region sequence-specific DNA binding
GO:0008270--F:zinc ion binding
GO:0006342--P:chromatin silencing
GO:0031507--P:heterochromatin assembly

KEGG

pop:POPTR_0009s12380g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-002427	Ailuropoda melanoleuca	42.00	1.00e-10	61.20
IUUC-Aca-004346	Anolis carolinensis	40.00	2.00e-10	61.20
IUUC-Bol-015574	Brassica oleracea	69.63	9.00e-90	322.00
IUUC-Cja-018757	Callithrix jacchus	38.10	4.00e-09	56.60
IUUC-Cfa-021156	Canis familiaris	42.00	1.00e-10	62.00
IUUC-Cpo-022284	Cavia porcellus	42.00	8.00e-11	62.40
IUUC-Csa-023515	Chlorocebus sabaeus	42.00	1.00e-10	61.60
IUUC-Cgl-026411	Colletotrichum gloeosporioides	42.86	2.00e-07	49.30
IUUC-Cne-026894	Cryptococcus neoformans	43.08	9.00e-10	58.20
IUUC-Dno-029446	Dasypus novemcinctus	42.00	1.00e-10	61.20
IUUC-Ete-032380	Echinops telfairi	42.00	1.00e-10	62.00
IUUC-Eca-034302	Equus caballus	42.00	1.00e-10	61.60
IUUC-Fca-035578	Felis catus	42.00	1.00e-10	62.00
IUUC-Gmo-038789	Gadus morhua	42.00	9.00e-11	62.40
IUUC-Gac-041666	Gasterosteus aculeatus	40.00	2.00e-10	61.20
IUUC-Ggo-044712	Gorilla gorilla	42.00	1.00e-10	62.00
IUUC-Hsa-045724	Homo sapiens	42.00	1.00e-10	62.00
IUUC-Lch-049793	Latimeria chalumnae	42.00	6.00e-11	62.80
IUUC-Laf-053656	Loxodonta africana	42.00	1.00e-10	61.60
IUUC-Mcc-055658	Macaca mulatta	42.00	1.00e-10	61.60
IUUC-Meu-055933	Macropus eugenii	32.35	7.00e-04	38.50
IUUC-Mmr-060993	Microcebus murinus	42.00	1.00e-10	61.60
IUUC-Mdo-062097	Monodelphis domestica	41.67	4.00e-10	60.10
IUUC-Mpu-066429	Mustela putorius furo	42.00	1.00e-10	61.60
IUUC-Mlu-067746	Myotis lucifugus	42.00	1.00e-10	61.60
IUUC-Nle-070143	Nomascus leucogenys	42.00	1.00e-10	61.60
IUUC-Ont-072257	Oreochromis niloticus	42.00	8.00e-11	62.40
IUUC-Oan-073654	Ornithorhynchus anatinus	42.00	1.00e-10	61.60
IUUC-Ocu-074417	Oryctolagus cuniculus	42.00	1.00e-10	62.00
IUUC-Ola-087502	Oryzias latipes	42.00	8.00e-11	62.40
IUUC-Oga-088662	Otolemur garnettii	42.00	1.00e-10	61.20
IUUC-Oar-090332	Ovis aries	42.00	1.00e-10	61.60
IUUC-Ptr-091646	Pan troglodytes	42.00	1.00e-10	61.20
IUUC-Pan-092122	Papio anubis	42.00	1.00e-10	61.60
IUUC-Pma-094621	Petromyzon marinus	39.58	3.00e-10	58.90
IUUC-Pfo-096107	Poecilia formosa	42.00	4.00e-11	63.50
IUUC-Pab-097635	Pongo abelii	42.00	1.00e-10	62.00
IUUC-Pca-100779	Procavia capensis	34.48	2.00e-11	64.30
IUUC-Pva-102839	Pteropus vampyrus	42.00	1.00e-10	61.60
IUUC-Rno-105933	Rattus norvegicus	42.00	2.00e-10	61.60
IUUC-Ssc-115645	Sus scrofa	42.00	1.00e-10	61.60
IUUC-Tru-118403	Takifugu rubripes	42.00	1.00e-10	62.00
IUUC-Tsy-119214	Tarsius syrichta	42.00	1.00e-10	61.60
IUUC-Tni-119736	Tetraodon nigroviridis	44.00	2.00e-11	64.70
IUUC-Tbe-128138	Tupaia belangeri	50.00	2.00e-05	44.70
IUUC-Vpa-130595	Vicugna pacos	42.00	1.00e-10	62.00
IUUC-Xtr-132307	Xenopus tropicalis	42.00	5.00e-11	63.20

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence