iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Smo-108893

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Putative uncharacterized protein COP1-2

Genbank Nucleotide ID

GL377602

Gene Name

COP1-2; SELMODRAFT_176960

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
SELMODRAFT_176960	EFJ20512	EFJ20512

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.10e-29	101.0	434	469
E3 activity/RING/U-box	7.10e-09	36.3	23	84

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sd.tllvsGsdDgt.ikvWDlrtg 33
           H+ + ++++f  +d t+lvsGsdDg+ +k+W +r+ 
   Q: 434  HERRAWSVDFsrTDpTMLVSGSDDGKvVKLWCTRQE 469
           88999******9889*********99999**98775 PP

E3 activity/RING/U-box

   S: 4    eeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliq 66
           ++f CpI  + M+d   +++G+++   +I  +l+++++ cP ++  lt+++l Pn  l ++ +
   Q: 23   KDFQCPICIQTMKDAFLTACGHSFCYMCIITHLNNKKN-CPCCGVYLTSSQLYPNFLLNKILK 84
           68***********************************9.****************99877655 PP

Organism

Selaginella moellendorffii

Protein Sequence
(Fasta)

MSFSSEQQQQ QQQQQGPRLL ADKDFQCPIC IQTMKDAFLT ACGHSFCYMC IITHLNNKKN 60
CPCCGVYLTS SQLYPNFLLN KILKKVATSQ ISCASPTEQL RFALQQGVDV PLKEIDSLLV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGAGTTTCT CGTCCGAGCA GCAACAGCAG CAACAGCAGC AGCAAGGGCC GCGGCTGTTG 60
GCGGATAAGG ATTTCCAGTG CCCGATTTGC ATCCAGACGA TGAAGGATGC GTTTCTCACG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR003613--Ubox_domain
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
PS00518--ZF_RING_1
PS50089--ZF_RING_2

Pfam

PF00400--WD40

SMART

SM00184--RING
SM00504--Ubox
SM00320--WD40

Gene Ontology

GO:0004842--F:ubiquitin-protein transferase activity
GO:0008270--F:zinc ion binding

KEGG

smo:SELMODRAFT_176960

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Gmo-039245	Gadus morhua	40.85	4.00e-122	431.00
IUUC-Oan-073409	Ornithorhynchus anatinus	39.36	5.00e-119	420.00
IUUC-Ola-086727	Oryzias latipes	40.56	4.00e-127	447.00
IUUC-Vvi-131386	Vitis vinifera	61.31	0.00e+00	761.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence