iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Xtr-132274

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Ring finger and CCCH-type domains 1

Genbank Nucleotide ID

AAMC01000521

Gene Name

rc3h1

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSXETG00000020030.3	ENSXETT00000043285.3	ENSXETP00000043285.3

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
E3 activity/RING/RING	44.68	3.00e-04	45.10	IUUC-Ath-007510
E3 activity/RING/RING	78.75	0.00e+00	1602.00	IUUC-Hsa-046163

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Xenopus tropicalis

Protein Sequence
(Fasta)

MPVQAPQWTD FLSCPICTQT FDETIRKPIS LGCGHTVCKM CLNKLHRKAC PFDQTTINTD 60
IELLPVNSAL LQLVGAQVPE QQQITLCGGC GAEDTKHYEE ARKCVEELAL YLKPLSTARE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGCCTGTAC AAGCACCGCA ATGGACCGAC TTTCTGTCCT GCCCTATTTG CACCCAAACT 60
TTCGACGAAA CAATCCGGAA GCCCATCAGT CTAGGCTGTG GACACACAGT TTGCAAGATG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR032671--RC3H1
IPR027370--Znf-RING_LisH
IPR000571--Znf_CCCH
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS50103--ZF_C3H1
PS00518--ZF_RING_1
PS50089--ZF_RING_2

Pfam

PF00642--zf-CCCH
PF13445--zf-RING_UBOX

SMART

SM00184--RING
SM00356--ZnF_C3H1

Gene Ontology

GO:0003730--F:mRNA 3'-UTR binding
GO:0008270--F:zinc ion binding
GO:0010608--P:posttranscriptional regulation of gene expression
GO:0042129--P:regulation of T cell proliferation

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001700	Ailuropoda melanoleuca	78.19	0.00e+00	1541.00
IUUC-Apl-003290	Anas platyrhynchos	77.14	0.00e+00	1575.00
IUUC-Aca-004905	Anolis carolinensis	75.41	0.00e+00	1551.00
IUUC-Aly-006116	Arabidopsis lyrata	44.68	4.00e-06	45.10
IUUC-Ath-007510	Arabidopsis thaliana	44.68	4.00e-06	45.10
IUUC-Ame-011475	Astyanax mexicanus	63.35	0.00e+00	1138.00
IUUC-Bta-012366	Bos taurus	50.87	0.00e+00	863.00
IUUC-Bra-016897	Brassica rapa	41.51	3.00e-06	45.40
IUUC-Cel-018474	Caenorhabditis elegans	38.60	2.00e-07	51.20
IUUC-Cja-019907	Callithrix jacchus	78.31	0.00e+00	1569.00
IUUC-Cfa-020679	Canis familiaris	77.39	0.00e+00	1514.00
IUUC-Cpo-022110	Cavia porcellus	76.70	0.00e+00	1568.00
IUUC-Csa-024166	Chlorocebus sabaeus	79.31	0.00e+00	1522.00
IUUC-Cho-024281	Choloepus hoffmanni	68.97	5.00e-162	565.00
IUUC-Dre-028035	Danio rerio	50.21	0.00e+00	763.00
IUUC-Dno-029311	Dasypus novemcinctus	48.72	0.00e+00	863.00
IUUC-Dor-030934	Dipodomys ordii	72.53	0.00e+00	1202.00
IUUC-Dme-031708	Drosophila melanogaster	64.02	3.00e-162	565.00
IUUC-Ete-032652	Echinops telfairi	80.52	0.00e+00	1156.00
IUUC-Eca-033236	Equus caballus	78.54	0.00e+00	1508.00
IUUC-Eeu-035091	Erinaceus europaeus	77.53	0.00e+00	799.00
IUUC-Fca-035773	Felis catus	77.44	0.00e+00	1516.00
IUUC-Fal-036972	Ficedula albicollis	77.12	0.00e+00	1594.00
IUUC-Gmo-039303	Gadus morhua	79.66	0.00e+00	875.00
IUUC-Gga-040314	Gallus gallus	49.26	0.00e+00	842.00
IUUC-Ggo-044691	Gorilla gorilla	74.98	0.00e+00	1469.00
IUUC-Hsa-046163	Homo sapiens	78.75	0.00e+00	1574.00
IUUC-Itr-048266	Ictidomys tridecemlineatus	66.53	0.00e+00	671.00
IUUC-Lch-050667	Latimeria chalumnae	71.00	0.00e+00	1396.00
IUUC-Loc-052404	Lepisosteus oculatus	66.64	0.00e+00	1219.00
IUUC-Laf-053618	Loxodonta africana	78.74	0.00e+00	1502.00
IUUC-Mcc-054692	Macaca mulatta	78.66	0.00e+00	1576.00
IUUC-Meu-056025	Macropus eugenii	64.71	0.00e+00	656.00
IUUC-Mga-060133	Meleagris gallopavo	49.68	0.00e+00	839.00
IUUC-Mmr-061188	Microcebus murinus	77.70	0.00e+00	1516.00
IUUC-Mdo-063035	Monodelphis domestica	77.20	0.00e+00	1569.00
IUUC-Mmu-064146	Mus musculus	76.94	0.00e+00	1531.00
IUUC-Mpu-066217	Mustela putorius furo	76.92	0.00e+00	1503.00
IUUC-Mlu-068023	Myotis lucifugus	77.13	0.00e+00	1513.00
IUUC-Nle-069506	Nomascus leucogenys	78.40	0.00e+00	1570.00
IUUC-Opr-070587	Ochotona princeps	66.93	0.00e+00	1240.00
IUUC-Ont-071278	Oreochromis niloticus	78.43	0.00e+00	864.00
IUUC-Oan-073500	Ornithorhynchus anatinus	78.55	0.00e+00	1643.00
IUUC-Ocu-074299	Oryctolagus cuniculus	77.34	0.00e+00	1457.00
IUUC-Ola-086665	Oryzias latipes	59.21	0.00e+00	1131.00
IUUC-Oga-088519	Otolemur garnettii	71.42	0.00e+00	1327.00
IUUC-Oar-089246	Ovis aries	77.21	0.00e+00	1452.00
IUUC-Ptr-091102	Pan troglodytes	78.83	0.00e+00	1576.00
IUUC-Pan-091952	Papio anubis	78.61	0.00e+00	1571.00
IUUC-Psi-093944	Pelodiscus sinensis	50.51	0.00e+00	866.00
IUUC-Pfo-097227	Poecilia formosa	60.91	0.00e+00	1107.00
IUUC-Pab-097975	Pongo abelii	77.05	0.00e+00	1531.00
IUUC-Pca-101127	Procavia capensis	69.50	0.00e+00	933.00
IUUC-Pva-102431	Pteropus vampyrus	70.88	0.00e+00	1320.00
IUUC-Rno-105194	Rattus norvegicus	49.38	0.00e+00	857.00
IUUC-Sha-106690	Sarcophilus harrisii	77.46	0.00e+00	1583.00
IUUC-Smo-109392	Selaginella moellendorffii	46.15	2.00e-06	46.20
IUUC-Sit-110791	Setaria italica	41.30	2.00e-05	42.70
IUUC-Sar-112923	Sorex araneus	49.13	0.00e+00	868.00
IUUC-Sbi-114208	Sorghum bicolor	41.30	2.00e-05	42.70
IUUC-Ssc-116189	Sus scrofa	77.98	0.00e+00	1487.00
IUUC-Tgu-116527	Taeniopygia guttata	77.30	0.00e+00	1593.00
IUUC-Tru-118389	Takifugu rubripes	61.05	0.00e+00	1161.00
IUUC-Tsy-119193	Tarsius syrichta	75.46	0.00e+00	1457.00
IUUC-Tni-119790	Tetraodon nigroviridis	61.66	0.00e+00	1052.00
IUUC-Tca-120920	Theobroma cacao	40.43	2.00e-05	42.00
IUUC-Tbe-127445	Tupaia belangeri	84.34	0.00e+00	1154.00
IUUC-Ttr-128877	Tursiops truncatus	77.04	0.00e+00	1486.00
IUUC-Vpa-130204	Vicugna pacos	50.78	0.00e+00	871.00
IUUC-Xma-134230	Xiphophorus maculatus	61.06	0.00e+00	1110.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence