iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Spo-108044

Ensembl Protein ID

SPCC1682.07.1:pep

UniProt Accession

O74995; TFH47_SCHPO

Genbank Protein ID

AAC29144.1; CAA20673.1; BAA31745.1

Protein Name

TFIIH basal transcription factor complex p47 subunit; Suppressor of stem-loop protein 1 homolog

Genbank Nucleotide ID

AF017646; CU329672; AB016221

Gene Name

ssl1; tfh47; SPCC1682.07

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
SPCC1682.07	SPCC1682.07.1	SPCC1682.07.1:pep

Annotation

mRNA Expression
GEO
Protein-protein Interaction
iRefIndex	HINT	Mentha
Post-translational Modifications (PTMs)
dbPAF	dbPTM	UniProt
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
E3 activity/RING/RING	48.45	3.00e-111	396.00	IUUC-Sce-106434

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Schizosaccharomyces pombe

Functional Description
(View)

One of the nine subunits forming the core-TFIIH basal transcription factor.

Protein Sequence
(Fasta)

MNENQKSFDS DKSESEDEQK NGRVKVRSRK TDDNEGYTWE GEYQRSWDIV QEDAEGSLVG 60
VIAGLIQSGK RKRLLRDTTP LQRGIIRHMV LVLDLSNSME ERDFHHKRFD LQIKYASEFV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTCTTGTTCT AGTACTTACT TAGTCTTACC ATTTTACTGG TATGCCCAGG AGTCATTGCT 60
TTTTAAAAAA ATAAAACTAA AAATAATAAA AGAAAGAACT TTCGCTCATT GCATGTAAAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0227--DNA damage
KW-0234--DNA repair
KW-0479--Metal-binding
KW-0539--Nucleus
KW-0597--Phosphoprotein
KW-1185--Reference proteome
KW-0804--Transcription
KW-0805--Transcription regulation
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR007198--Ssl1-like
IPR004595--TFIIH_C1-like_dom
IPR012170--TFIIH_SSL1/p44
IPR002035--VWF_A
IPR013087--Znf_C2H2_type

PROSITE

PS50234--VWFA

Pfam

PF07975--C1_4
PF04056--Ssl1

SMART

SM01047--C1_4
SM00327--VWA

Gene Ontology

GO:0000439--C:core TFIIH complex
GO:0005829--C:cytosol
GO:0005675--C:holo TFIIH complex
GO:0005634--C:nucleus
GO:0003676--F:nucleic acid binding
GO:0000991--F:transcription factor activity, core RNA polymerase II binding
GO:0008270--F:zinc ion binding
GO:0006281--P:DNA repair
GO:0006289--P:nucleotide-excision repair
GO:0006357--P:regulation of transcription from RNA polymerase II promoter
GO:0006367--P:transcription initiation from RNA polymerase II promoter

KEGG

spo:SPCC1682.07

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000536	Aegilops tauschii	39.59	1.00e-51	194.00
IUUC-Aml-002041	Ailuropoda melanoleuca	39.03	6.00e-73	265.00
IUUC-Atr-003056	Amborella trichopoda	43.21	3.00e-73	266.00
IUUC-Apl-003464	Anas platyrhynchos	37.36	1.00e-63	234.00
IUUC-Aca-004745	Anolis carolinensis	39.13	3.00e-72	263.00
IUUC-Aly-005559	Arabidopsis lyrata	38.86	8.00e-77	278.00
IUUC-Ath-007556	Arabidopsis thaliana	38.86	5.00e-77	279.00
IUUC-Ago-007851	Ashbya gossypii	50.00	7.00e-118	415.00
IUUC-Acl-008100	Aspergillus clavatus	56.05	4.00e-139	486.00
IUUC-Afl-008649	Aspergillus flavus	53.49	3.00e-19	84.00
IUUC-Afu-009066	Aspergillus fumigatus	57.36	1.00e-139	487.00
IUUC-Ani-009372	Aspergillus nidulans	57.47	7.00e-133	465.00
IUUC-Ang-009726	Aspergillus niger	54.15	2.00e-140	489.00
IUUC-Aor-010135	Aspergillus oryzae	57.87	2.00e-133	466.00
IUUC-Ate-010399	Aspergillus terreus	48.68	7.00e-44	167.00
IUUC-Ame-011618	Astyanax mexicanus	37.66	4.00e-79	286.00
IUUC-Bgr-012154	Blumeria graminis	54.59	2.00e-131	460.00
IUUC-Bta-012353	Bos taurus	40.56	6.00e-77	278.00
IUUC-Bci-013932	Botrytis cinerea	58.21	3.00e-137	479.00
IUUC-Bdi-014391	Brachypodium distachyon	40.51	2.00e-79	286.00
IUUC-Bol-015128	Brassica oleracea	40.00	1.00e-80	291.00
IUUC-Bra-017932	Brassica rapa	40.86	1.00e-80	291.00
IUUC-Cel-018649	Caenorhabditis elegans	35.86	6.00e-62	229.00
IUUC-Cja-018776	Callithrix jacchus	38.78	4.00e-72	263.00
IUUC-Cfa-020584	Canis familiaris	39.29	2.00e-73	267.00
IUUC-Cpo-021300	Cavia porcellus	39.54	1.00e-73	268.00
IUUC-Cre-022657	Chlamydomonas reinhardtii	35.62	2.00e-62	230.00
IUUC-Csa-024092	Chlorocebus sabaeus	39.29	2.00e-73	267.00
IUUC-Cho-024919	Choloepus hoffmanni	37.16	8.00e-32	127.00
IUUC-Cin-025386	Ciona intestinalis	36.93	4.00e-73	266.00
IUUC-Csv-026295	Ciona savignyi	37.59	1.00e-74	271.00
IUUC-Cgl-026612	Colletotrichum gloeosporioides	52.43	4.00e-121	426.00
IUUC-Cne-026956	Cryptococcus neoformans	35.17	1.00e-78	285.00
IUUC-Cme-027150	Cyanidioschyzon merolae	29.36	1.00e-42	165.00
IUUC-Dre-027962	Danio rerio	39.80	4.00e-83	299.00
IUUC-Dno-029979	Dasypus novemcinctus	37.94	1.00e-58	218.00
IUUC-Dor-030364	Dipodomys ordii	30.43	2.40e-01	28.10
IUUC-Dse-031405	Dothistroma septosporum	47.85	5.00e-115	405.00
IUUC-Dme-031710	Drosophila melanogaster	38.33	1.00e-76	278.00
IUUC-Ete-032631	Echinops telfairi	37.06	4.00e-66	243.00
IUUC-Eca-034054	Equus caballus	40.58	1.00e-73	268.00
IUUC-Fca-035724	Felis catus	38.27	2.00e-68	250.00
IUUC-Fal-036987	Ficedula albicollis	38.52	3.00e-80	290.00
IUUC-Fox-037692	Fusarium oxysporum	53.10	2.00e-128	450.00
IUUC-Fso-038442	Fusarium solani	54.16	3.00e-128	449.00
IUUC-Gmo-039273	Gadus morhua	36.73	1.00e-76	278.00
IUUC-Ggr-040009	Gaeumannomyces graminis	53.44	1.00e-102	365.00
IUUC-Gga-041089	Gallus gallus	39.03	9.00e-80	288.00
IUUC-Gac-041978	Gasterosteus aculeatus	37.24	3.00e-72	263.00
IUUC-Gma-043371	Glycine max	41.01	3.00e-85	306.00
IUUC-Hsa-046001	Homo sapiens	39.29	2.00e-73	266.00
IUUC-Itr-048355	Ictidomys tridecemlineatus	39.29	3.00e-80	290.00
IUUC-Kpa-049235	Komagataella pastoris	48.97	2.00e-113	400.00
IUUC-Lch-049926	Latimeria chalumnae	38.01	1.00e-76	278.00
IUUC-Lpe-051352	Leersia perrieri	40.15	1.00e-76	278.00
IUUC-Loc-051987	Lepisosteus oculatus	38.29	4.00e-79	286.00
IUUC-Lma-053171	Leptosphaeria maculans	43.72	2.00e-100	358.00
IUUC-Laf-054372	Loxodonta africana	39.80	5.00e-76	275.00
IUUC-Mcc-055108	Macaca mulatta	39.29	2.00e-73	267.00
IUUC-Meu-056100	Macropus eugenii	23.16	2.00e-01	29.30
IUUC-Mor-056990	Magnaporthe oryzae	51.16	4.00e-121	426.00
IUUC-Mtr-058401	Medicago truncatula	40.97	3.00e-85	306.00
IUUC-Mla-059186	Melampsora laricipopulina	48.28	3.00e-101	360.00
IUUC-Mvi-060262	Microbotryum violaceum	42.96	6.00e-95	339.00
IUUC-Mmr-061688	Microcebus murinus	37.24	9.00e-65	238.00
IUUC-Mdo-062154	Monodelphis domestica	37.76	5.00e-76	276.00
IUUC-Mmu-064232	Mus musculus	38.93	2.00e-72	263.00
IUUC-Mac-065091	Musa acuminata	41.21	5.00e-80	289.00
IUUC-Mpu-066747	Mustela putorius furo	36.48	2.00e-62	230.00
IUUC-Mlu-067799	Myotis lucifugus	36.15	1.00e-62	231.00
IUUC-Nfi-068371	Neosartorya fischeri	37.34	4.00e-26	108.00
IUUC-Ncr-068704	Neurospora crassa	48.09	2.00e-111	394.00
IUUC-Nle-069054	Nomascus leucogenys	39.03	7.00e-72	262.00
IUUC-Ont-071624	Oreochromis niloticus	37.76	3.00e-75	273.00
IUUC-Oan-072898	Ornithorhynchus anatinus	38.27	1.00e-75	275.00
IUUC-Ocu-074289	Oryctolagus cuniculus	37.91	8.00e-59	218.00
IUUC-Oba-075985	Oryza barthii	40.77	1.00e-76	278.00
IUUC-Obr-076887	Oryza brachyantha	40.91	2.00e-79	287.00
IUUC-Ogl-077823	Oryza glaberrima	40.77	1.00e-76	278.00
IUUC-Ogu-078412	Oryza glumaepatula	41.90	6.00e-66	243.00
IUUC-Oin-079569	Oryza indica	39.25	2.00e-51	194.00
IUUC-Olo-080249	Oryza longistaminata	37.38	1.00e-51	195.00
IUUC-Ome-081240	Oryza meridionalis	41.59	9.00e-66	242.00
IUUC-Oni-082152	Oryza nivara	41.59	8.00e-66	242.00
IUUC-Opu-084011	Oryza punctata	40.77	3.00e-77	280.00
IUUC-Oru-084719	Oryza rufipogon	40.40	2.00e-67	247.00
IUUC-Osa-085286	Oryza sativa	40.77	8.00e-77	279.00
IUUC-Ola-086525	Oryzias latipes	34.38	2.00e-58	217.00
IUUC-Olu-087876	Ostreococcus lucimarinus	35.13	1.00e-54	205.00
IUUC-Oga-088125	Otolemur garnettii	39.80	7.00e-75	271.00
IUUC-Oar-089701	Ovis aries	40.56	1.00e-76	278.00
IUUC-Ptr-091218	Pan troglodytes	39.03	3.00e-73	266.00
IUUC-Pan-091755	Papio anubis	39.29	2.00e-73	267.00
IUUC-Psi-094061	Pelodiscus sinensis	38.27	1.00e-78	284.00
IUUC-Pma-094430	Petromyzon marinus	38.15	4.00e-51	192.00
IUUC-Pno-094900	Phaeosphaeria nodorum	36.64	5.00e-67	246.00
IUUC-Ppa-095895	Physcomitrella patens	41.90	6.00e-88	315.00
IUUC-Pfo-096297	Poecilia formosa	37.75	2.00e-50	189.00
IUUC-Pab-097717	Pongo abelii	39.29	2.00e-73	267.00
IUUC-Pop-098938	Populus trichocarpa	40.67	5.00e-81	292.00
IUUC-Pca-100389	Procavia capensis	36.86	2.00e-54	204.00
IUUC-Ppe-102045	Prunus persica	41.79	8.00e-84	301.00
IUUC-Pva-102357	Pteropus vampyrus	37.80	8.00e-29	118.00
IUUC-Pgr-103399	Puccinia graminis	47.33	2.00e-103	367.00
IUUC-Ptt-103872	Puccinia triticina	49.03	1.00e-106	377.00
IUUC-Pte-104092	Pyrenophora teres	47.41	4.00e-94	336.00
IUUC-Pyt-104669	Pyrenophora triticirepentis	47.68	3.00e-94	337.00
IUUC-Rno-105515	Rattus norvegicus	39.95	3.00e-76	276.00
IUUC-Sce-106434	Saccharomyces cerevisiae	48.45	3.00e-112	396.00
IUUC-Sha-106808	Sarcophilus harrisii	37.76	1.00e-75	274.00
IUUC-Sja-107995	Schizosaccharomyces japonicus	71.64	8.00e-176	607.00
IUUC-Smo-109581	Selaginella moellendorffii	41.65	2.00e-79	286.00
IUUC-Sit-110704	Setaria italica	40.20	4.00e-80	289.00
IUUC-Sly-110990	Solanum lycopersicum	42.43	6.00e-70	255.00
IUUC-Stu-112542	Solanum tuberosum	35.71	1.00e-36	144.00
IUUC-Sar-113766	Sorex araneus	38.70	4.00e-60	222.00
IUUC-Sbi-114016	Sorghum bicolor	40.55	3.00e-79	286.00
IUUC-Sre-115099	Sporisorium reilianum	44.08	8.00e-105	372.00
IUUC-Ssc-115277	Sus scrofa	39.42	2.00e-71	260.00
IUUC-Tgu-117343	Taeniopygia guttata	38.01	5.00e-78	282.00
IUUC-Tru-118397	Takifugu rubripes	37.76	9.00e-75	271.00
IUUC-Tsy-119393	Tarsius syrichta	30.65	5.20e-01	27.70
IUUC-Tni-120272	Tetraodon nigroviridis	38.58	7.00e-75	272.00
IUUC-Tca-121514	Theobroma cacao	41.22	1.00e-85	308.00
IUUC-Tre-121990	Trichoderma reesei	52.43	7.00e-119	418.00
IUUC-Tvi-122504	Trichoderma virens	53.35	7.00e-113	398.00
IUUC-Tae-123153	Triticum aestivum	40.51	4.00e-78	283.00
IUUC-Tur-126693	Triticum urartu	44.49	4.00e-63	232.00
IUUC-Tme-127011	Tuber melanosporum	59.69	5.00e-140	488.00
IUUC-Tbe-127939	Tupaia belangeri	39.03	7.00e-72	262.00
IUUC-Ttr-128889	Tursiops truncatus	34.69	5.00e-65	239.00
IUUC-Uma-129450	Ustilago maydis	44.84	6.00e-104	369.00
IUUC-Vda-129919	Verticillium dahliae	52.36	1.00e-106	377.00
IUUC-Vvi-130928	Vitis vinifera	42.13	1.00e-83	301.00
IUUC-Xtr-131891	Xenopus tropicalis	33.92	9.00e-67	245.00
IUUC-Xma-133260	Xiphophorus maculatus	37.75	5.00e-50	188.00
IUUC-Yli-134578	Yarrowia lipolytica	53.20	1.00e-115	407.00
IUUC-Zma-135427	Zea mays	40.46	6.00e-79	285.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence