iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ssc-115460

Ensembl Protein ID

ENSSSCP00000014616.2

UniProt Accession

F1SD96; F1SD96_PIG

Genbank Protein ID

ENSSSCP00000014616

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CU463133

Gene Name

RAD23A

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSSSCG00000013747.2	ENSSSCT00000015021.2	ENSSSCP00000014616.2

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
UBD/Alpha-Helix/UBA	5.30e-20	71.2	179	218
ULD/UDP/UBQ/UBQ_PIM	3.80e-26	91.1	20	97

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

UBD/Alpha-Helix/UBA

   S: 2    ededkleqlveMGFdreealqaLraannnleaAveyLldg 41
           e+e +l ++++MG++re+++ aLra++nn+ +AveyLl+g
   Q: 179  EYETMLTEITSMGYERERVVAALRASYNNPHRAVEYLLTG 218
           7899**********************************97 PP

ULD/UDP/UBQ/UBQ_PIM

   S: 1    mkltvktlkgkefelevseddtveelKekiakesg...vppeqqkLIyaGkiLkDdttLselgikdgsvvhlvvkksk 75
           +++t+ktl++++f++++++d+tv+ lKeki++e+g   +p++ qkLIyaGkiL+Dd +++++ i+++++v+++v+k+k
   Q: 20   VTITLKTLQQQTFKIRMEPDETVKVLKEKIEAEKGrdaFPVAGQKLIYAGKILSDDVPIRDYRIDEKNFVVVMVTKAK 97
           68*************************************************************************987 PP

Organism

Sus scrofa

Protein Sequence
(Fasta)

VACCVRIPGP PRRSGPTMAV TITLKTLQQQ TFKIRMEPDE TVKVLKEKIE AEKGRDAFPV 60
AGQKLIYAGK ILSDDVPIRD YRIDEKNFVV VMVTKAKTSP GTSVPPEASP TAAPESSTSF 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CGGCGTGAGT TGCATGTTGT GTGAGGATCC CGGGGCCGCC GCGTCGCTCG GGTCCTACCA 60
TGGCCGTCAC CATCACGCTC AAAACGCTGC AACAGCAGAC CTTCAAGATC CGCATGGAGC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome

Interpro

IPR004806--Rad23
IPR006636--STI1_HS-bd
IPR015940--UBA
IPR009060--UBA-like
IPR029071--Ubiquitin-rel_dom
IPR000626--Ubiquitin_dom
IPR015360--XPC-bd

PROSITE

PS50030--UBA
PS50053--UBIQUITIN_2

Pfam

PF00627--UBA
PF00240--ubiquitin
PF09280--XPC-binding

PRINTS

PR01839--RAD23PROTEIN

SMART

SM00727--STI1
SM00165--UBA
SM00213--UBQ

Gene Ontology

GO:0005829--C:cytosol
GO:0005815--C:microtubule organizing center
GO:0005654--C:nucleoplasm
GO:0003684--F:damaged DNA binding
GO:0006289--P:nucleotide-excision repair
GO:0045070--P:positive regulation of viral genome replication
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0032434--P:regulation of proteasomal ubiquitin-dependent protein catabolic process

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001515	Ailuropoda melanoleuca	92.63	1.00e-154	538.00
IUUC-Atr-002756	Amborella trichopoda	35.31	8.00e-48	184.00
IUUC-Aca-004704	Anolis carolinensis	78.69	3.00e-109	387.00
IUUC-Aly-006159	Arabidopsis lyrata	34.02	5.00e-51	194.00
IUUC-Ago-007830	Ashbya gossypii	26.60	2.00e-14	73.20
IUUC-Acl-008212	Aspergillus clavatus	35.77	3.00e-24	105.00
IUUC-Afl-008605	Aspergillus flavus	43.40	5.00e-19	88.60
IUUC-Ani-009460	Aspergillus nidulans	38.40	2.00e-28	119.00
IUUC-Aor-010032	Aspergillus oryzae	43.40	1.00e-18	87.40
IUUC-Bgr-012056	Blumeria graminis	34.16	2.00e-21	95.90
IUUC-Bta-012377	Bos taurus	96.97	4.00e-149	520.00
IUUC-Bci-013933	Botrytis cinerea	37.31	9.00e-21	94.00
IUUC-Bdi-014718	Brachypodium distachyon	32.70	3.00e-42	166.00
IUUC-Bol-015272	Brassica oleracea	35.22	2.00e-50	192.00
IUUC-Bra-016970	Brassica rapa	34.79	1.00e-48	186.00
IUUC-Cel-018364	Caenorhabditis elegans	30.89	2.00e-26	112.00
IUUC-Cja-018946	Callithrix jacchus	95.00	6.00e-151	526.00
IUUC-Cfa-020577	Canis familiaris	98.07	1.00e-155	541.00
IUUC-Cpo-021850	Cavia porcellus	90.26	8.00e-171	592.00
IUUC-Csa-023183	Chlorocebus sabaeus	96.42	3.00e-151	527.00
IUUC-Csv-025823	Ciona savignyi	40.74	8.00e-38	149.00
IUUC-Cgl-026495	Colletotrichum gloeosporioides	32.02	1.00e-21	96.70
IUUC-Cme-027260	Cyanidioschyzon merolae	27.73	7.00e-23	101.00
IUUC-Dno-030017	Dasypus novemcinctus	91.24	2.00e-127	448.00
IUUC-Dor-030358	Dipodomys ordii	82.97	3.00e-123	434.00
IUUC-Dme-032027	Drosophila melanogaster	40.10	2.00e-64	239.00
IUUC-Eca-033599	Equus caballus	94.10	2.00e-136	478.00
IUUC-Fca-036051	Felis catus	97.25	2.00e-153	535.00
IUUC-Fso-038107	Fusarium solani	35.65	1.00e-24	107.00
IUUC-Gga-040133	Gallus gallus	86.51	6.00e-74	270.00
IUUC-Gac-042298	Gasterosteus aculeatus	60.50	2.00e-84	305.00
IUUC-Ggo-045084	Gorilla gorilla	96.58	3.00e-162	564.00
IUUC-Hsa-046614	Homo sapiens	96.69	1.00e-151	528.00
IUUC-Itr-047875	Ictidomys tridecemlineatus	95.26	4.00e-179	620.00
IUUC-Lch-050563	Latimeria chalumnae	62.66	6.00e-105	373.00
IUUC-Loc-051758	Lepisosteus oculatus	59.00	2.00e-84	305.00
IUUC-Laf-054589	Loxodonta africana	96.14	3.00e-145	507.00
IUUC-Mcc-055860	Macaca mulatta	96.42	3.00e-151	527.00
IUUC-Meu-056459	Macropus eugenii	93.02	1.00e-103	369.00
IUUC-Mtr-058239	Medicago truncatula	33.25	5.00e-47	181.00
IUUC-Mmr-060819	Microcebus murinus	95.32	7.00e-162	562.00
IUUC-Mdo-062742	Monodelphis domestica	83.87	3.00e-140	491.00
IUUC-Mmu-063929	Mus musculus	93.11	3.00e-158	550.00
IUUC-Mac-065180	Musa acuminata	33.92	2.00e-43	169.00
IUUC-Mpu-066684	Mustela putorius furo	98.07	4.00e-158	550.00
IUUC-Mlu-067787	Myotis lucifugus	96.14	1.00e-152	532.00
IUUC-Nle-069846	Nomascus leucogenys	85.01	7.00e-130	456.00
IUUC-Ont-072271	Oreochromis niloticus	54.59	4.00e-84	304.00
IUUC-Oan-073572	Ornithorhynchus anatinus	77.51	2.00e-129	454.00
IUUC-Ocu-074968	Oryctolagus cuniculus	93.23	6.00e-101	361.00
IUUC-Obr-076909	Oryza brachyantha	33.93	7.00e-43	167.00
IUUC-Oga-089075	Otolemur garnettii	95.00	7.00e-154	536.00
IUUC-Oar-090387	Ovis aries	96.32	9.00e-156	542.00
IUUC-Ptr-090912	Pan troglodytes	93.11	8.00e-141	492.00
IUUC-Pan-092140	Papio anubis	96.05	6.00e-161	559.00
IUUC-Psi-093347	Pelodiscus sinensis	85.94	8.00e-60	223.00
IUUC-Pfo-096607	Poecilia formosa	62.92	1.00e-95	342.00
IUUC-Pab-097738	Pongo abelii	92.84	4.00e-143	500.00
IUUC-Pop-099642	Populus trichocarpa	34.96	4.00e-49	188.00
IUUC-Pca-100348	Procavia capensis	93.41	3.00e-143	500.00
IUUC-Pva-102412	Pteropus vampyrus	97.80	9.00e-157	545.00
IUUC-Pgr-103618	Puccinia graminis	36.29	5.00e-25	108.00
IUUC-Rno-105569	Rattus norvegicus	93.11	4.00e-146	510.00
IUUC-Sha-106918	Sarcophilus harrisii	84.26	6.00e-126	443.00
IUUC-Ssl-108382	Sclerotinia sclerotiorum	33.97	4.00e-20	92.00
IUUC-Smo-109518	Selaginella moellendorffii	37.60	1.00e-32	133.00
IUUC-Sit-109813	Setaria italica	35.23	4.00e-46	178.00
IUUC-Stu-112306	Solanum tuberosum	32.74	3.00e-42	165.00
IUUC-Sbi-114459	Sorghum bicolor	32.12	1.00e-45	176.00
IUUC-Tgu-116918	Taeniopygia guttata	56.89	1.00e-88	319.00
IUUC-Tsy-119385	Tarsius syrichta	79.41	1.00e-69	255.00
IUUC-Tni-120493	Tetraodon nigroviridis	59.89	2.00e-93	335.00
IUUC-Tca-121594	Theobroma cacao	36.04	1.00e-50	193.00
IUUC-Tre-121911	Trichoderma reesei	33.08	6.00e-28	117.00
IUUC-Tme-127092	Tuber melanosporum	35.58	2.00e-24	106.00
IUUC-Tbe-127603	Tupaia belangeri	84.67	4.00e-55	207.00
IUUC-Ttr-129232	Tursiops truncatus	87.60	5.00e-146	509.00
IUUC-Xma-133647	Xiphophorus maculatus	74.66	8.00e-71	260.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence