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Basic Information Integrated Annotations
Tag Content
iUUCD ID IUUC-Cel-018253
Ensembl Protein ID M03C11.8
UniProt Accession G5EDG2; SMRCD_CAEEL
Genbank Protein ID CAA88960.2; CAA88960.2
Protein Name SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A containing DEAD/H box 1 homolog
Genbank Nucleotide ID Z49128; AL021171
Gene Name M03C11.8
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
WBGene00010845 M03C11.8 M03C11.8
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
microRNAmiRNAMapRAID2
Post-translational Modifications (PTMs)
dbPAF
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family Identity E-Value Score Source Orthology
UBD/Alpha-Helix/CUE 43.27 5.00e-115 410.00 IUUC-Sce-106399
Active Site
Position(s) Description Evidence
N/A N/A N/A
Organism Caenorhabditis elegans
Functional Description
(View)

Functional Description


     DNA helicase that possesses intrinsic ATP-dependent nucleosome-remodeling activity and is both required for DNA repair and heterochromatin organization. Promotes DNA end resection of double-strand breaks (DSBs) following DNA damage: probably acts by weakening histone DNA interactions in nucleosomes flanking DSBs (By similarity).
 DNA helicase that possesses intrinsic ATP-dependent nucleosome-remodeling activity and is both required for DNA repair and heterochromatin organization. Promotes DNA end resection of double-strand breaks (DSBs) following DNA damage: probably acts by weakening histone DNA interactions in nucleosomes flanking DSBs (By similarity).
Protein Sequence
(Fasta)
MSTTSDFQTG ERVRVAHQGN PQSSSLQADM DAKKALLSQN LNNGHLTARP PRTTGPGIKY 60
GEKKPKKQKG SDDDDEDYVD ETMPSEDEED FDNNEEDEDD DDYEEEGPRK RKAPSKKKLV 120
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Protein Fasta Sequence


>IUUC-Cel-018253|UBD,CUE|Caenorhabditis elegans
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Nucleotide Sequence
(Fasta)
ATGTCAACGA CGAGCGATTT TCAAACCGGA GAACGGGTGC GTGTTGCACA TCAAGGCAAC 60
CCACAATCCT CTAGCTTACA AGCCGATATG GACGCCAAAA AGGCGCTTTT GTCTCAAAAT 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Cel-018253|UBD,CUE|Caenorhabditis elegans
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0067--ATP-binding
KW-0156--Chromatin regulator
KW-0181--Complete proteome
KW-0227--DNA damage
KW-0234--DNA repair
KW-0238--DNA-binding
KW-0347--Helicase
KW-0378--Hydrolase
KW-0547--Nucleotide-binding
KW-0539--Nucleus
KW-1185--Reference proteome
Interpro

IPR014001--Helicase_ATP-bd
IPR001650--Helicase_C
IPR027417--P-loop_NTPase
IPR000330--SNF2_N
PROSITE

PS51192--HELICASE_ATP_BIND_1
PS51194--HELICASE_CTER
Pfam

PF00271--Helicase_C
PF00176--SNF2_N
SMART

SM00487--DEXDc
SM00490--HELICc
Gene Ontology

GO:0005634--C:nucleus
GO:0005524--F:ATP binding
GO:0003677--F:DNA binding
GO:0004386--F:helicase activity
GO:0016569--P:covalent chromatin modification
GO:0006281--P:DNA repair
KEGG cel:CELE_M03C11.8
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000567 Aegilops tauschii 38.52 1.00e-96 346.00
IUUC-Aml-002063 Ailuropoda melanoleuca 42.88 1.00e-144 506.00
IUUC-Atr-003078 Amborella trichopoda 39.78 1.00e-101 362.00
IUUC-Apl-003860 Anas platyrhynchos 43.11 8.00e-151 526.00
IUUC-Aca-004485 Anolis carolinensis 43.06 3.00e-146 511.00
IUUC-Aly-006561 Arabidopsis lyrata 37.73 2.00e-102 365.00
IUUC-Ath-006832 Arabidopsis thaliana 39.59 2.00e-101 362.00
IUUC-Ago-007758 Ashbya gossypii 44.05 2.00e-128 452.00
IUUC-Acl-008226 Aspergillus clavatus 42.09 2.00e-122 432.00
IUUC-Afl-008556 Aspergillus flavus 42.26 5.00e-118 417.00
IUUC-Afu-008799 Aspergillus fumigatus 42.40 4.00e-123 434.00
IUUC-Ani-009127 Aspergillus nidulans 42.46 9.00e-121 427.00
IUUC-Ang-009676 Aspergillus niger 41.53 8.00e-121 427.00
IUUC-Aor-010184 Aspergillus oryzae 42.18 4.00e-118 417.00
IUUC-Ate-010559 Aspergillus terreus 42.83 4.00e-123 434.00
IUUC-Ame-011933 Astyanax mexicanus 40.37 8.00e-137 479.00
IUUC-Bta-012963 Bos taurus 43.68 2.00e-144 505.00
IUUC-Bci-013670 Botrytis cinerea 38.45 1.00e-113 403.00
IUUC-Bdi-014286 Brachypodium distachyon 38.78 1.00e-99 356.00
IUUC-Bol-016519 Brassica oleracea 39.78 4.00e-102 364.00
IUUC-Bra-017239 Brassica rapa 39.78 6.00e-102 363.00
IUUC-Cja-019465 Callithrix jacchus 43.95 2.00e-144 505.00
IUUC-Cfa-020637 Canis familiaris 44.21 6.00e-145 507.00
IUUC-Cpo-021822 Cavia porcellus 44.21 9.00e-145 506.00
IUUC-Csa-023315 Chlorocebus sabaeus 43.72 2.00e-142 498.00
IUUC-Cin-025444 Ciona intestinalis 42.62 6.00e-137 479.00
IUUC-Cgl-026383 Colletotrichum gloeosporioides 31.82 2.00e-91 329.00
IUUC-Cne-027090 Cryptococcus neoformans 41.65 2.00e-105 375.00
IUUC-Dre-028385 Danio rerio 40.97 2.00e-135 475.00
IUUC-Dno-028932 Dasypus novemcinctus 42.72 3.00e-144 504.00
IUUC-Dse-031394 Dothistroma septosporum 39.92 1.00e-97 350.00
IUUC-Dme-031640 Drosophila melanogaster 42.40 2.00e-138 485.00
IUUC-Eca-033276 Equus caballus 42.75 2.00e-144 505.00
IUUC-Fca-035936 Felis catus 42.10 1.00e-140 493.00
IUUC-Fal-037636 Ficedula albicollis 42.79 9.00e-150 523.00
IUUC-Fso-038229 Fusarium solani 35.25 3.00e-102 365.00
IUUC-Gmo-039654 Gadus morhua 41.03 1.00e-122 432.00
IUUC-Ggr-039922 Gaeumannomyces graminis 36.18 2.00e-87 316.00
IUUC-Gga-040646 Gallus gallus 42.63 3.00e-151 528.00
IUUC-Gac-042320 Gasterosteus aculeatus 41.60 1.00e-125 442.00
IUUC-Gma-042832 Glycine max 39.40 6.00e-100 357.00
IUUC-Ggo-044875 Gorilla gorilla 39.55 1.00e-121 429.00
IUUC-Hsa-046992 Homo sapiens 43.65 1.00e-143 503.00
IUUC-Hvu-047408 Hordeum vulgare 37.08 6.00e-97 347.00
IUUC-Itr-047881 Ictidomys tridecemlineatus 46.40 2.00e-137 481.00
IUUC-Kpa-049212 Komagataella pastoris 42.64 4.00e-121 428.00
IUUC-Lpe-050987 Leersia perrieri 38.78 3.00e-100 358.00
IUUC-Loc-052272 Lepisosteus oculatus 42.47 7.00e-142 496.00
IUUC-Lma-053118 Leptosphaeria maculans 40.07 2.00e-111 396.00
IUUC-Laf-053436 Loxodonta africana 41.78 2.00e-137 482.00
IUUC-Mcc-055209 Macaca mulatta 43.72 9.00e-143 499.00
IUUC-Mor-056994 Magnaporthe oryzae 33.77 2.00e-88 319.00
IUUC-Mpo-057305 Magnaporthe poae 35.87 8.00e-90 324.00
IUUC-Mtr-058432 Medicago truncatula 39.05 5.00e-99 354.00
IUUC-Mla-058972 Melampsora laricipopulina 40.64 1.00e-114 405.00
IUUC-Mga-059572 Meleagris gallopavo 42.69 9.00e-145 506.00
IUUC-Mvi-060209 Microbotryum violaceum 37.87 9.00e-128 450.00
IUUC-Mmr-061416 Microcebus murinus 42.20 2.00e-127 447.00
IUUC-Mdo-062869 Monodelphis domestica 44.01 1.00e-150 526.00
IUUC-Mmu-064272 Mus musculus 44.18 4.00e-139 487.00
IUUC-Mac-064963 Musa acuminata 38.61 7.00e-94 337.00
IUUC-Mpu-065755 Mustela putorius furo 43.04 3.00e-145 508.00
IUUC-Mlu-067604 Myotis lucifugus 42.28 4.00e-148 517.00
IUUC-Nfi-068310 Neosartorya fischeri 42.45 1.00e-122 433.00
IUUC-Ncr-068841 Neurospora crassa 34.63 2.00e-98 352.00
IUUC-Nle-069227 Nomascus leucogenys 43.65 1.00e-143 503.00
IUUC-Opr-071088 Ochotona princeps 38.22 1.00e-123 436.00
IUUC-Ont-072291 Oreochromis niloticus 41.86 2.00e-128 452.00
IUUC-Oan-073460 Ornithorhynchus anatinus 43.72 6.00e-147 513.00
IUUC-Ocu-074811 Oryctolagus cuniculus 43.04 5.00e-144 504.00
IUUC-Oba-075463 Oryza barthii 38.85 2.00e-100 358.00
IUUC-Obr-076342 Oryza brachyantha 38.64 5.00e-102 364.00
IUUC-Ogu-078837 Oryza glumaepatula 38.85 7.00e-101 360.00
IUUC-Oin-079623 Oryza indica 38.85 4.00e-101 361.00
IUUC-Ome-081105 Oryza meridionalis 38.85 3.00e-101 362.00
IUUC-Oni-082598 Oryza nivara 38.85 1.00e-100 360.00
IUUC-Opu-084040 Oryza punctata 38.85 3.00e-101 362.00
IUUC-Oru-084219 Oryza rufipogon 38.85 4.00e-101 361.00
IUUC-Osa-085461 Oryza sativa 38.85 5.00e-101 361.00
IUUC-Ola-087307 Oryzias latipes 42.39 3.00e-128 451.00
IUUC-Olu-087812 Ostreococcus lucimarinus 36.17 8.00e-90 323.00
IUUC-Oga-089064 Otolemur garnettii 44.37 4.00e-144 504.00
IUUC-Oar-090054 Ovis aries 42.77 2.00e-144 505.00
IUUC-Ptr-091228 Pan troglodytes 43.79 7.00e-144 503.00
IUUC-Pan-092769 Papio anubis 43.25 4.00e-127 447.00
IUUC-Psi-093202 Pelodiscus sinensis 43.43 1.00e-147 515.00
IUUC-Pma-094725 Petromyzon marinus 39.67 2.00e-148 518.00
IUUC-Pno-095130 Phaeosphaeria nodorum 40.38 9.00e-105 373.00
IUUC-Ppa-095559 Physcomitrella patens 40.18 9.00e-106 376.00
IUUC-Pfo-096546 Poecilia formosa 41.50 4.00e-134 471.00
IUUC-Pab-097698 Pongo abelii 43.58 4.00e-141 494.00
IUUC-Pop-099986 Populus trichocarpa 39.96 8.00e-99 353.00
IUUC-Ppe-101649 Prunus persica 39.78 4.00e-98 351.00
IUUC-Pva-102138 Pteropus vampyrus 42.50 1.00e-139 489.00
IUUC-Pgr-103272 Puccinia graminis 37.93 1.00e-106 380.00
IUUC-Ptt-103880 Puccinia triticina 33.24 2.00e-113 402.00
IUUC-Pte-104260 Pyrenophora teres 40.08 2.00e-106 379.00
IUUC-Pyt-104532 Pyrenophora triticirepentis 35.10 3.00e-80 292.00
IUUC-Rno-105903 Rattus norvegicus 42.90 2.00e-139 489.00
IUUC-Sce-106399 Saccharomyces cerevisiae 42.83 3.00e-121 428.00
IUUC-Sha-106783 Sarcophilus harrisii 44.17 1.00e-145 509.00
IUUC-Sja-107887 Schizosaccharomyces japonicus 42.40 1.00e-122 433.00
IUUC-Spo-108154 Schizosaccharomyces pombe 42.46 4.00e-120 425.00
IUUC-Smo-108759 Selaginella moellendorffii 39.55 5.00e-102 363.00
IUUC-Sit-110023 Setaria italica 38.40 5.00e-101 360.00
IUUC-Sly-111423 Solanum lycopersicum 39.18 6.00e-100 357.00
IUUC-Sbi-114688 Sorghum bicolor 37.52 2.00e-98 352.00
IUUC-Sre-114983 Sporisorium reilianum 39.79 2.00e-104 372.00
IUUC-Ssc-116030 Sus scrofa 42.88 8.00e-145 506.00
IUUC-Tgu-117451 Taeniopygia guttata 43.43 2.00e-147 514.00
IUUC-Tru-118600 Takifugu rubripes 41.29 8.00e-122 430.00
IUUC-Tsy-119130 Tarsius syrichta 46.73 1.00e-77 283.00
IUUC-Tni-119758 Tetraodon nigroviridis 42.17 3.00e-128 451.00
IUUC-Tca-121797 Theobroma cacao 39.85 1.00e-99 355.00
IUUC-Tre-121883 Trichoderma reesei 37.22 1.00e-96 347.00
IUUC-Tvi-122333 Trichoderma virens 37.02 2.00e-104 372.00
IUUC-Tae-122848 Triticum aestivum 38.52 9.00e-97 347.00
IUUC-Tur-126594 Triticum urartu 38.26 3.00e-96 344.00
IUUC-Tme-127106 Tuber melanosporum 42.64 4.00e-122 431.00
IUUC-Tbe-127911 Tupaia belangeri 46.93 6.00e-130 457.00
IUUC-Ttr-128597 Tursiops truncatus 42.50 2.00e-143 502.00
IUUC-Uma-129321 Ustilago maydis 40.54 5.00e-106 378.00
IUUC-Vpa-130686 Vicugna pacos 37.24 6.00e-108 384.00
IUUC-Vvi-131046 Vitis vinifera 38.53 2.00e-98 352.00
IUUC-Xtr-132740 Xenopus tropicalis 38.45 5.00e-138 483.00
IUUC-Xma-134260 Xiphophorus maculatus 41.50 4.00e-133 467.00
IUUC-Yli-134634 Yarrowia lipolytica 38.07 4.00e-125 441.00
IUUC-Zma-135493 Zea mays 38.08 2.00e-98 352.00
Created Date 25-Jun-2017

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