iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Bta-012951

Ensembl Protein ID

ENSBTAP00000010688.3

UniProt Accession

F1MFF9; F1MFF9_BOVIN

Genbank Protein ID

ENSBTAP00000010688

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

DAAA02043090

Gene Name

CHD5

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSBTAG00000040477.2	ENSBTAT00000010688.3	ENSBTAP00000010688.3

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/PHD	6.60e-17	61.6	289	334

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/PHD

   S: 2    kvClvCgeggedekslveCekCrewfHpaClklsveeelpnsekwiCpkCrs 53
           ++C vC++gge    ++ C+ C +++H  Cl ++  e+ p+ + w Cp C++
   Q: 289  DYCEVCQQGGE----IILCDTCPRAYHLVCLDPE-LEKAPEGK-WSCPHCEK 334
           79*********....9******************.*******7.******86 PP

Organism

Bos taurus

Protein Sequence
(Fasta)

SNDELSENEE DLEEKSESEG SDYSPNKKKK KKLKDKKEKK AKRKKKDDEE DDNEDGCLKE 60
PKSSGQLMAE WGLDDVDYLF SEADYHTLTN YKAFSQFLRP LIAKKNPKIP MSKMMTVLGA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AGCAATGACG AGCTGTCGGA AAATGAAGAG GATCTGGAAG AGAAGTCGGA GAGTGAAGGC 60
AGTGACTACT CCCCGAATAA AAAGAAGAAG AAAAAACTCA AGGACAAGAA GGAGAAAAAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR012957--CHD_C2
IPR012958--CHD_N
IPR000953--Chromo/chromo_shadow_dom
IPR023780--Chromo_domain
IPR016197--Chromodomain-like
IPR002464--DNA/RNA_helicase_DEAH_CS
IPR009462--DUF1086
IPR009463--DUF1087
IPR014001--Helicase_ATP-bd
IPR001650--Helicase_C
IPR009071--HMG_box_dom
IPR027417--P-loop_NTPase
IPR000330--SNF2_N
IPR019786--Zinc_finger_PHD-type_CS
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50013--CHROMO_2
PS00690--DEAH_ATP_HELICASE
PS51192--HELICASE_ATP_BIND_1
PS51194--HELICASE_CTER
PS01359--ZF_PHD_1
PS50016--ZF_PHD_2

Pfam

PF08074--CHDCT2
PF08073--CHDNT
PF00385--Chromo
PF06461--DUF1086
PF06465--DUF1087
PF00271--Helicase_C
PF00628--PHD
PF00176--SNF2_N

SMART

SM00298--CHROMO
SM00487--DEXDc
SM01146--DUF1086
SM01147--DUF1087
SM00490--HELICc
SM00249--PHD

Gene Ontology

GO:0005829--C:cytosol
GO:0016020--C:membrane
GO:0016607--C:nuclear speck
GO:0005524--F:ATP binding
GO:0008026--F:ATP-dependent helicase activity
GO:0003677--F:DNA binding
GO:0008270--F:zinc ion binding
GO:0098532--P:histone H3-K27 trimethylation
GO:0060850--P:regulation of transcription involved in cell fate commitment

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001701	Ailuropoda melanoleuca	89.78	0.00e+00	2795.00
IUUC-Apl-003406	Anas platyrhynchos	81.80	0.00e+00	2499.00
IUUC-Ame-011883	Astyanax mexicanus	81.81	0.00e+00	2108.00
IUUC-Cja-018871	Callithrix jacchus	91.53	0.00e+00	2295.00
IUUC-Cfa-021063	Canis familiaris	90.59	0.00e+00	2771.00
IUUC-Cpo-022083	Cavia porcellus	88.10	0.00e+00	2734.00
IUUC-Csa-023084	Chlorocebus sabaeus	90.62	0.00e+00	2883.00
IUUC-Dme-032150	Drosophila melanogaster	63.22	0.00e+00	1416.00
IUUC-Eca-034372	Equus caballus	90.77	0.00e+00	2787.00
IUUC-Fca-036048	Felis catus	90.19	0.00e+00	2789.00
IUUC-Fal-037282	Ficedula albicollis	83.90	0.00e+00	2642.00
IUUC-Gga-040607	Gallus gallus	86.18	0.00e+00	2246.00
IUUC-Ggo-044514	Gorilla gorilla	90.35	0.00e+00	2868.00
IUUC-Hsa-046181	Homo sapiens	90.40	0.00e+00	2848.00
IUUC-Laf-053749	Loxodonta africana	90.66	0.00e+00	2840.00
IUUC-Mcc-055856	Macaca mulatta	90.37	0.00e+00	2881.00
IUUC-Meu-056050	Macropus eugenii	71.65	0.00e+00	1056.00
IUUC-Mga-059630	Meleagris gallopavo	84.92	0.00e+00	2659.00
IUUC-Mmr-060986	Microcebus murinus	89.39	0.00e+00	2787.00
IUUC-Mmu-063644	Mus musculus	89.93	0.00e+00	2839.00
IUUC-Nle-069824	Nomascus leucogenys	87.71	0.00e+00	2600.00
IUUC-Oga-088775	Otolemur garnettii	90.08	0.00e+00	2836.00
IUUC-Oar-090301	Ovis aries	90.99	0.00e+00	2558.00
IUUC-Ptr-090586	Pan troglodytes	89.38	0.00e+00	2811.00
IUUC-Pan-092282	Papio anubis	90.54	0.00e+00	2838.00
IUUC-Psi-093007	Pelodiscus sinensis	87.16	0.00e+00	2216.00
IUUC-Pab-097677	Pongo abelii	92.50	0.00e+00	2335.00
IUUC-Pca-100559	Procavia capensis	86.44	0.00e+00	2648.00
IUUC-Rno-105378	Rattus norvegicus	89.88	0.00e+00	2821.00
IUUC-Sha-107350	Sarcophilus harrisii	80.08	0.00e+00	2577.00
IUUC-Smo-108946	Selaginella moellendorffii	38.74	1.00e-155	545.00
IUUC-Ssc-116303	Sus scrofa	90.82	0.00e+00	2361.00
IUUC-Tgu-116779	Taeniopygia guttata	81.80	0.00e+00	2479.00
IUUC-Ttr-128301	Tursiops truncatus	92.13	0.00e+00	2653.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence