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Basic Information Integrated Annotations
Tag Content
iUUCD ID IUUC-Ath-007483
UUCD1 version UUC-ArT-01418
Ensembl Protein ID AT5G62560.1
UniProt Accession Q0WUF6; Q8L7M5; Q9FJJ0; PUB41_ARATH
Genbank Protein ID BAB11506.1; AED97622.1; AAM91572.1; AAN15670.1; BAE99242.1
Protein Name U-box domain-containing protein 41; Plant U-box protein 41; RING-type E3 ubiquitin transferase PUB41
Genbank Nucleotide ID AB015469; CP002688; AY128369; BT000351; AK227203
Gene Name PUB41; At5g62560; K19B1.17
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT5G62560 AT5G62560.1 AT5G62560.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
HINT
Protein Expression/Proteomics
GPMDB
Status Reviewed
Details
Family Domain References (PMIDs)
E3 activity/RING/U-box U-box 18393940
Classification
Family E-value Score Start End
E3 activity/RING/U-box 3.20e-20 72.8 31 103
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 activity/RING/U-box
   S: 2    vpeeflCpIslelMrdPvvlpsGitydrssIekwlasggktcPvtrqplteedlvPnltlrrliqawceenss 74
           +p+eflCpI++ lM+dPvv++sG+t++r s++ + + g   + +++++ + ++++Pnl+++++i +wc+++++
   Q: 31   TPPEFLCPITGFLMSDPVVVSSGQTFERLSVQVCRNLGYIPDLLDGTRPDLSTVIPNLAMKSTIFSWCDRQKV 103
           79*******************************************************************9876 PP
   
Organism Arabidopsis thaliana
Functional Description
(View)

Functional Description


     Functions as an E3 ubiquitin ligase.
 Functions as an E3 ubiquitin ligase.
Protein Sequence
(Fasta)
MGGNKQRWFS FHQRSSSATT TTLPQHKHDE TPPEFLCPIT GFLMSDPVVV SSGQTFERLS 60
VQVCRNLGYI PDLLDGTRPD LSTVIPNLAM KSTIFSWCDR QKVDHPRPPD AAYVEGVVRA 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Ath-007483|E3,U-box|Arabidopsis thaliana
Please wait for a moment...
Nucleotide Sequence
(Fasta)
TTTTGTTGTC CCTTGATTTA GCTAATAAAC AAAAATCAAA TAGATAGTTT TCCGGTTTAA 60
TCTAACTTGG TTCGGTTGAT TTTTCCGGTT AATCTATTGG TTCGGTTTAA TCATCCAAAA 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Ath-007483|E3,U-box|Arabidopsis thaliana
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0808--Transferase
KW-0833--Ubl conjugation pathway
Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR000225--Armadillo
IPR011987--ATPase_V1-cplx_hsu_C
IPR003613--Ubox_domain
PROSITE

PS50176--ARM_REPEAT
PS51698--U_BOX
Pfam

PF00514--Arm
PF04564--U-box
SMART

SM00185--ARM
SM00504--Ubox
Gene Ontology

GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0004842--F:ubiquitin-protein transferase activity
KEGG ath:AT5G62560
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aml-001718 Ailuropoda melanoleuca 30.88 8.00e-10 58.90
IUUC-Aly-006242 Arabidopsis lyrata 95.54 0.00e+00 1009.00
IUUC-Bta-013555 Bos taurus 30.00 1.00e-07 52.00
IUUC-Bol-015381 Brassica oleracea 83.54 0.00e+00 870.00
IUUC-Bra-017860 Brassica rapa 84.75 0.00e+00 880.00
IUUC-Cpo-021441 Cavia porcellus 30.28 4.00e-10 60.10
IUUC-Csa-023874 Chlorocebus sabaeus 30.88 5.00e-10 59.30
IUUC-Ete-032470 Echinops telfairi 30.88 2.00e-09 58.20
IUUC-Fca-035957 Felis catus 31.62 2.00e-10 61.20
IUUC-Gac-041812 Gasterosteus aculeatus 28.65 2.00e-09 58.20
IUUC-Ggo-045030 Gorilla gorilla 30.00 1.00e-07 51.60
IUUC-Hsa-046644 Homo sapiens 30.88 7.00e-10 59.30
IUUC-Itr-048617 Ictidomys tridecemlineatus 30.88 3.00e-09 57.00
IUUC-Mcc-055873 Macaca mulatta 30.88 4.00e-10 59.30
IUUC-Meu-056121 Macropus eugenii 30.77 6.00e-08 53.10
IUUC-Mga-059688 Meleagris gallopavo 32.61 1.00e-12 68.20
IUUC-Mmr-061778 Microcebus murinus 32.23 4.00e-10 58.20
IUUC-Mac-064827 Musa acuminata 45.73 1.00e-52 199.00
IUUC-Mlu-067208 Myotis lucifugus 30.00 1.00e-07 52.00
IUUC-Opr-070282 Ochotona princeps 29.41 8.00e-09 55.50
IUUC-Ocu-074455 Oryctolagus cuniculus 32.35 7.00e-10 58.90
IUUC-Ogl-077033 Oryza glaberrima 40.00 5.00e-39 154.00
IUUC-Ogu-078087 Oryza glumaepatula 40.00 1.00e-38 153.00
IUUC-Oin-079818 Oryza indica 38.56 1.00e-35 142.00
IUUC-Olo-080764 Oryza longistaminata 41.92 2.00e-32 132.00
IUUC-Ome-081313 Oryza meridionalis 40.32 2.00e-39 156.00
IUUC-Oni-082747 Oryza nivara 40.65 4.00e-40 158.00
IUUC-Oru-084445 Oryza rufipogon 40.65 1.00e-39 158.00
IUUC-Osa-085410 Oryza sativa 40.65 3.00e-40 159.00
IUUC-Oga-088587 Otolemur garnettii 30.00 5.00e-08 53.10
IUUC-Ptr-090915 Pan troglodytes 30.88 7.00e-10 59.30
IUUC-Pan-092171 Papio anubis 31.62 3.00e-10 60.80
IUUC-Pca-100151 Procavia capensis 30.15 1.00e-08 54.70
IUUC-Sha-107173 Sarcophilus harrisii 30.00 2.00e-07 51.60
IUUC-Sit-109782 Setaria italica 42.04 3.00e-52 198.00
IUUC-Sar-113307 Sorex araneus 30.00 1.00e-07 51.20
IUUC-Tru-118154 Takifugu rubripes 28.09 2.00e-08 54.30
IUUC-Tni-120112 Tetraodon nigroviridis 28.09 2.00e-08 54.30
IUUC-Vpa-130794 Vicugna pacos 30.00 3.00e-07 50.80
Created Date 25-Jun-2017

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