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Basic Information Integrated Annotations
Tag Content
UUCD2 ID IUUC-Sce-106315
UUCD1 version UUC-SaC-00090
Ensembl Protein ID YCR072C
UniProt Accession P25382; D6VR74; Q8NKJ4; NLE1_YEAST
Genbank Protein ID CAC42989.1; AAT92685.1; DAA07543.1
Protein Name Ribosome assembly protein 4; Notchless protein homolog 1; Ribosome biogenesis factor RSA4
Genbank Nucleotide ID X59720; AY692666; BK006937
Gene Name RSA4; YCR072C; YCR72C
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
YCR072C YCR072C YCR072C
Annotation
mRNA Expression
GEOFFGED
Protein-protein Interaction
IIDiRefIndexHINTMentha
Protein 3D Structure
PDBMMDB
Post-translational Modifications (PTMs)
CPLMdbPAFdbPTMBioGRID
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 7.90e-63 204.0 184 221
UBD/Beta-Prp 2.30e-77 258.6 136 330
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvll 36
           gH ++v c+++ +d   +++Gs D+ti++WD+++g +l
   Q: 184  GHYNWVLCVSWsPDgEVIATGSMDNTIRLWDPKSGQCL 221
           799*********999********************997 PP
   

   UBD/Beta-Prp
   S: 45   lrslsgheaevtavkfspdgk.ilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvv 144
            + + gh +++ +  f p+++  +vtg+ D+t+++wd +t +++htlkgh + vl++s+sp+g+++++Gs d+tir+wd ++gqcl + l+gh++++++++
   Q: 136  SSAIAGHGSTILCSAFAPHTSsRMVTGAGDNTARIWDCDTQTPMHTLKGHYNWVLCVSWSPDGEVIATGSMDNTIRLWDPKSGQCLGDALRGHSKWITSLS 236
           344599************998899***************************************************************************99 PP
   S: 145  vhp......dg.nllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvklwdlq.tgecvrtlnghtdnvksvrfsp 232
           + p       +   l+s+s+D+t+++Wd  +  + +t++g ht+sv ++++  +g  l sgs+d+tv++wd+  +g+c+++l+ h  +v+ + +s 
   Q: 237  WEPihlvkpGSkPRLASSSKDGTIKIWDTVSRVCQYTMSG-HTNSVSCVKWGGQG-LLYSGSHDRTVRVWDINsQGRCINILKSHAHWVNHLSLST 330
           87533332233479************************99.************76.9***************999***************999983 PP
   
Organism Saccharomyces cerevisiae
Functional Description
(View)

Functional Description


     Involved in ribosome biogenesis. Required for processing and efficient intra-nuclear transport of pre-60S ribosomal subunits. Interacts with the AAA-ATPase Midasin (MDN1/REA1), which is essential for the ATP-dependent dissociation of a group of nonribosomal factors from the pre-60S particle.
 Involved in ribosome biogenesis. Required for processing and efficient intra-nuclear transport of pre-60S ribosomal subunits. Interacts with the AAA-ATPase Midasin (MDN1/REA1), which is essential for the ATP-dependent dissociation of a group of nonribosomal factors from the pre-60S particle.
Protein Sequence
(Fasta)
MSTLIPPPSK KQKKEAQLPR EVAIIPKDLP NVSIKFQALD TGDNVGGALR VPGAISEKQL 60
EELLNQLNGT SDDPVPYTFS CTIQGKKASD PVKTIDITDN LYSSLIKPGY NSTEDQITLL 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Sce-106315|E3,WD_repeat;UBD,Beta-Prp|Saccharomyces cerevisiae
Please wait for a moment...
Nucleotide Sequence
(Fasta)
ATGTCCACCC TGATTCCTCC ACCTTCTAAG AAACAAAAGA AAGAGGCTCA ACTTCCCAGA 60
GAAGTAGCTA TTATTCCGAA AGATTTACCC AATGTTTCAA TCAAGTTCCA AGCTTTAGAT 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Sce-106315|E3,WD_repeat;UBD,Beta-Prp|Saccharomyces cerevisiae
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0002--3D-structure
KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0853--WD repeat
Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR012972--NLE
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF08154--NLE
PF00400--WD40
PRINTS

PR00320--GPROTEINBRPT
SMART

SM00320--WD40
Gene Ontology

GO:0005730--C:nucleolus
GO:0000027--P:ribosomal large subunit assembly
KEGG sce:YCR072C
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000437 Aegilops tauschii 50.64 9.00e-146 507.00
IUUC-Aml-001793 Ailuropoda melanoleuca 46.75 3.00e-132 462.00
IUUC-Atr-002507 Amborella trichopoda 49.58 3.00e-139 486.00
IUUC-Apl-003964 Anas platyrhynchos 48.94 3.00e-130 456.00
IUUC-Aca-005354 Anolis carolinensis 27.15 3.00e-36 144.00
IUUC-Aly-006396 Arabidopsis lyrata 48.09 3.00e-134 469.00
IUUC-Ath-007278 Arabidopsis thaliana 48.31 1.00e-134 471.00
IUUC-Ago-007951 Ashbya gossypii 80.39 0.00e+00 885.00
IUUC-Acl-008298 Aspergillus clavatus 57.66 6.00e-168 582.00
IUUC-Afl-008581 Aspergillus flavus 61.13 8.00e-134 467.00
IUUC-Afu-008906 Aspergillus fumigatus 56.81 3.00e-164 569.00
IUUC-Ani-009189 Aspergillus nidulans 56.92 8.00e-162 561.00
IUUC-Ang-009630 Aspergillus niger 56.65 8.00e-172 594.00
IUUC-Aor-010038 Aspergillus oryzae 56.65 4.00e-175 605.00
IUUC-Ate-010278 Aspergillus terreus 54.89 6.00e-166 575.00
IUUC-Ame-011890 Astyanax mexicanus 48.58 6.00e-134 468.00
IUUC-Bgr-012011 Blumeria graminis 53.93 2.00e-159 553.00
IUUC-Bta-012964 Bos taurus 47.46 8.00e-134 468.00
IUUC-Bci-013592 Botrytis cinerea 55.36 6.00e-157 545.00
IUUC-Bdi-015035 Brachypodium distachyon 50.42 1.00e-143 500.00
IUUC-Bol-015501 Brassica oleracea 48.52 2.00e-135 473.00
IUUC-Bra-017642 Brassica rapa 48.94 2.00e-136 476.00
IUUC-Cel-018430 Caenorhabditis elegans 47.94 3.00e-133 466.00
IUUC-Cja-019125 Callithrix jacchus 47.67 2.00e-133 467.00
IUUC-Cfa-021013 Canis familiaris 48.58 1.00e-129 454.00
IUUC-Cpo-021743 Cavia porcellus 47.56 7.00e-134 468.00
IUUC-Cre-022973 Chlamydomonas reinhardtii 40.86 2.00e-108 384.00
IUUC-Csa-024270 Chlorocebus sabaeus 46.87 2.00e-132 463.00
IUUC-Cin-025795 Ciona intestinalis 48.73 3.00e-130 456.00
IUUC-Csv-025953 Ciona savignyi 50.00 4.00e-132 462.00
IUUC-Cgl-026517 Colletotrichum gloeosporioides 59.63 9.00e-127 444.00
IUUC-Cne-026901 Cryptococcus neoformans 46.79 3.00e-143 499.00
IUUC-Cme-027281 Cyanidioschyzon merolae 39.63 2.00e-101 361.00
IUUC-Dre-028515 Danio rerio 48.58 2.00e-131 460.00
IUUC-Dno-029596 Dasypus novemcinctus 47.97 2.00e-133 466.00
IUUC-Dor-030494 Dipodomys ordii 46.59 4.00e-135 472.00
IUUC-Dse-031538 Dothistroma septosporum 52.98 2.00e-154 537.00
IUUC-Dme-031974 Drosophila melanogaster 44.81 9.00e-117 411.00
IUUC-Ete-032948 Echinops telfairi 56.19 7.00e-69 252.00
IUUC-Eca-033399 Equus caballus 47.12 2.00e-131 460.00
IUUC-Eeu-035013 Erinaceus europaeus 55.24 4.00e-68 249.00
IUUC-Fca-035860 Felis catus 47.26 2.00e-132 463.00
IUUC-Fal-037069 Ficedula albicollis 55.38 9.00e-82 294.00
IUUC-Fox-038059 Fusarium oxysporum 53.46 1.00e-147 514.00
IUUC-Fso-038445 Fusarium solani 52.50 7.00e-145 504.00
IUUC-Gmo-039319 Gadus morhua 47.75 6.00e-125 438.00
IUUC-Ggr-040095 Gaeumannomyces graminis 51.05 1.00e-149 521.00
IUUC-Gga-040303 Gallus gallus 55.20 1.00e-81 293.00
IUUC-Gac-042267 Gasterosteus aculeatus 49.19 1.00e-131 461.00
IUUC-Gma-043974 Glycine max 48.94 3.00e-140 489.00
IUUC-Ggo-044637 Gorilla gorilla 47.93 6.00e-132 462.00
IUUC-Hsa-046128 Homo sapiens 46.81 4.00e-133 466.00
IUUC-Hvu-047373 Hordeum vulgare 50.64 1.00e-144 504.00
IUUC-Itr-048070 Ictidomys tridecemlineatus 46.88 2.00e-132 463.00
IUUC-Kpa-049274 Komagataella pastoris 69.73 0.00e+00 765.00
IUUC-Lch-049907 Latimeria chalumnae 46.57 2.00e-125 440.00
IUUC-Lpe-050778 Leersia perrieri 46.82 2.00e-126 443.00
IUUC-Loc-051889 Lepisosteus oculatus 48.07 2.00e-130 457.00
IUUC-Lma-053041 Leptosphaeria maculans 51.58 5.00e-152 529.00
IUUC-Laf-053598 Loxodonta africana 47.26 4.00e-133 465.00
IUUC-Mcc-055660 Macaca mulatta 47.07 8.00e-133 464.00
IUUC-Meu-056197 Macropus eugenii 54.17 1.00e-114 404.00
IUUC-Mor-056949 Magnaporthe oryzae 51.52 2.00e-141 493.00
IUUC-Mpo-057571 Magnaporthe poae 59.91 1.00e-70 258.00
IUUC-Mtr-058530 Medicago truncatula 54.98 7.00e-137 478.00
IUUC-Mla-059133 Melampsora laricipopulina 48.69 2.00e-134 470.00
IUUC-Mga-059252 Meleagris gallopavo 53.24 1.00e-115 407.00
IUUC-Mvi-060522 Microbotryum violaceum 49.23 2.00e-149 520.00
IUUC-Mmr-061117 Microcebus murinus 46.63 1.00e-132 464.00
IUUC-Mdo-062892 Monodelphis domestica 47.87 3.00e-132 462.00
IUUC-Mmu-064108 Mus musculus 52.09 5.00e-128 449.00
IUUC-Mac-064430 Musa acuminata 49.79 5.00e-139 485.00
IUUC-Mpu-065882 Mustela putorius furo 46.75 1.00e-130 457.00
IUUC-Mlu-068123 Myotis lucifugus 47.66 2.00e-133 467.00
IUUC-Nfi-068484 Neosartorya fischeri 56.43 7.00e-165 571.00
IUUC-Ncr-068649 Neurospora crassa 49.52 7.00e-139 485.00
IUUC-Nle-069140 Nomascus leucogenys 47.52 2.00e-131 459.00
IUUC-Opr-070220 Ochotona princeps 54.17 8.00e-117 411.00
IUUC-Ont-072643 Oreochromis niloticus 48.68 9.00e-135 471.00
IUUC-Ocu-074007 Oryctolagus cuniculus 46.75 3.00e-130 456.00
IUUC-Oba-075904 Oryza barthii 51.27 7.00e-145 504.00
IUUC-Obr-076280 Oryza brachyantha 51.48 1.00e-145 507.00
IUUC-Ogl-077425 Oryza glaberrima 51.48 4.00e-145 506.00
IUUC-Ogu-078586 Oryza glumaepatula 51.27 1.00e-144 504.00
IUUC-Oin-079489 Oryza indica 49.58 3.00e-137 479.00
IUUC-Olo-080587 Oryza longistaminata 48.05 1.00e-143 502.00
IUUC-Ome-081905 Oryza meridionalis 51.27 6.00e-145 505.00
IUUC-Oni-083022 Oryza nivara 51.27 8.00e-145 504.00
IUUC-Opu-083615 Oryza punctata 51.27 5.00e-145 505.00
IUUC-Oru-085076 Oryza rufipogon 51.27 1.00e-144 504.00
IUUC-Osa-085744 Oryza sativa 51.48 4.00e-146 508.00
IUUC-Ola-087290 Oryzias latipes 48.59 1.00e-134 471.00
IUUC-Olu-087898 Ostreococcus lucimarinus 49.55 5.00e-138 482.00
IUUC-Oga-088980 Otolemur garnettii 47.33 5.00e-132 462.00
IUUC-Oar-089580 Ovis aries 44.08 6.00e-106 375.00
IUUC-Ptr-090845 Pan troglodytes 47.23 1.00e-130 457.00
IUUC-Pan-092836 Papio anubis 47.27 2.00e-133 466.00
IUUC-Psi-093232 Pelodiscus sinensis 27.42 6.00e-37 145.00
IUUC-Pma-094319 Petromyzon marinus 28.11 7.00e-32 129.00
IUUC-Pno-095052 Phaeosphaeria nodorum 51.74 2.00e-160 556.00
IUUC-Ppa-095432 Physcomitrella patens 49.79 5.00e-140 488.00
IUUC-Pfo-096963 Poecilia formosa 44.35 2.00e-107 380.00
IUUC-Pab-097716 Pongo abelii 45.66 9.00e-123 431.00
IUUC-Pop-099224 Populus trichocarpa 49.07 1.00e-139 488.00
IUUC-Pca-100682 Procavia capensis 54.06 1.00e-114 404.00
IUUC-Ppe-101819 Prunus persica 50.42 1.00e-140 491.00
IUUC-Pva-102338 Pteropus vampyrus 40.37 9.00e-81 291.00
IUUC-Pgr-103583 Puccinia graminis 53.20 5.00e-128 449.00
IUUC-Ptt-103737 Puccinia triticina 37.71 1.00e-97 348.00
IUUC-Pte-104150 Pyrenophora teres 52.50 8.00e-159 551.00
IUUC-Pyt-104606 Pyrenophora triticirepentis 52.88 2.00e-159 553.00
IUUC-Rno-105987 Rattus norvegicus 47.74 9.00e-132 461.00
IUUC-Sha-107273 Sarcophilus harrisii 47.67 1.00e-132 464.00
IUUC-Sja-107677 Schizosaccharomyces japonicus 58.25 2.00e-176 609.00
IUUC-Spo-108092 Schizosaccharomyces pombe 55.92 6.00e-169 585.00
IUUC-Ssl-108442 Sclerotinia sclerotiorum 52.16 4.00e-149 519.00
IUUC-Smo-108976 Selaginella moellendorffii 47.66 3.00e-134 469.00
IUUC-Sit-110329 Setaria italica 50.62 6.00e-146 508.00
IUUC-Sly-111830 Solanum lycopersicum 50.42 5.00e-142 495.00
IUUC-Stu-112603 Solanum tuberosum 50.42 9.00e-142 494.00
IUUC-Sbi-114560 Sorghum bicolor 50.84 2.00e-144 503.00
IUUC-Sre-115133 Sporisorium reilianum 42.18 8.00e-132 462.00
IUUC-Ssc-115903 Sus scrofa 47.57 2.00e-134 470.00
IUUC-Tgu-116798 Taeniopygia guttata 47.67 7.00e-132 461.00
IUUC-Tru-118361 Takifugu rubripes 48.50 2.00e-135 473.00
IUUC-Tsy-118849 Tarsius syrichta 47.05 3.00e-132 462.00
IUUC-Tni-120094 Tetraodon nigroviridis 49.20 7.00e-136 474.00
IUUC-Tca-121634 Theobroma cacao 49.89 3.00e-139 486.00
IUUC-Tre-122051 Trichoderma reesei 52.21 4.00e-141 492.00
IUUC-Tvi-122322 Trichoderma virens 52.78 3.00e-145 506.00
IUUC-Tae-125822 Triticum aestivum 50.64 6.00e-146 508.00
IUUC-Tur-126766 Triticum urartu 45.01 5.00e-138 482.00
IUUC-Tme-127175 Tuber melanosporum 59.42 3.00e-180 622.00
IUUC-Tbe-127779 Tupaia belangeri 52.84 5.00e-126 442.00
IUUC-Ttr-128224 Tursiops truncatus 48.67 1.00e-125 441.00
IUUC-Uma-129537 Ustilago maydis 42.61 8.00e-135 472.00
IUUC-Vda-129927 Verticillium dahliae 48.94 2.00e-137 480.00
IUUC-Vpa-130658 Vicugna pacos 40.65 7.00e-60 222.00
IUUC-Vvi-131659 Vitis vinifera 49.79 9.00e-142 494.00
IUUC-Xtr-132918 Xenopus tropicalis 46.08 1.00e-122 431.00
IUUC-Xma-133700 Xiphophorus maculatus 48.69 2.00e-131 459.00
IUUC-Yli-134478 Yarrowia lipolytica 68.34 0.00e+00 741.00
IUUC-Zma-135835 Zea mays 48.40 4.00e-140 489.00
Created Date 25-Jun-2017

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