iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ssc-116127

Ensembl Protein ID

ENSSSCP00000026458.1

UniProt Accession

I3LQS7; I3LQS7_PIG

Genbank Protein ID

ENSSSCP00000026458

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

FP102591

Gene Name

RRP9

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSSSCG00000023177.1	ENSSSCT00000032341.1	ENSSSCP00000026458.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	6.70e-31	105.3	325	359
UBD/Beta-Prp	7.60e-42	143.8	148	409

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sdtllvsGsdDgtikvWDlrtgv 34
           gH++s+ ++++ ++ ++vsG+dDg++ +W l++ +
   Q: 325  GHQGSIDSIQLiNEEHMVSGADDGSVALWGLSKKR 359
           8*********9999***************987665 PP

UBD/Beta-Prp

   S: 9    hksvitcvkfspdksllatgsrdgtikvwdvttgkl...........lrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkc 86
           h+  itc+ ++pd+  ++++ +d ti+ w+v++g +             +  gh++ + ++ +s+dgk+l++g + ++i +w+ +++  
   Q: 148  HQLSITCLVITPDDLAIFSAAKDCTIIKWSVESGRKlhviprakkgaEGQPPGHSSHILCMAISSDGKYLASGDRSKLILIWEAQSCRH 236
           6779999****************************9899988888887888888888******************************** PP
   S: 87   vhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtl 175
           ++t++gh d v  l+f + ++ l s+shdr ++vw++ +++ +e tl gh+++v  +   + ++++ +G+ D+tvr+W+++ ++ l   
   Q: 237  LYTFTGHRDAVSGLAFRRGTHQLYSTSHDRSVKVWNVAENSYVE-TLFGHQDAVAALDALSRECCVTAGGRDGTVRVWKIPEESQLVFY 324
           ******************99***********************9.***********************************999988765 PP
   S: 176  tgghtdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnght...........dnvksvrfspnderlvsgssDgsiriWdlr 252
            g h++s+ s+++  + +++vsg++dg+v lw l++++ +  +++              +v+sv+++ n++++++gs+ +s+r+W + 
   Q: 325  -G-HQGSIDSIQLINE-EHMVSGADDGSVALWGLSKKRPLALQREAHglrgeqgleqpFWVSSVAALLNTDLIATGSHNNSVRLWQCG 409
           .6.*********9886.7*****************999966665544477888999999**************************875 PP

Organism

Sus scrofa

Protein Sequence
(Fasta)

VGDMSATVAA RKRGKSASGA GAGAGAGKRR RKGDSSGDKG KSKGGGKMNE EISSDSENES 60
IAPRKTEEEE EEELEETAQE KKLRLAKLYL EQLKQQEEEK AEAREFEEDQ VAGKLKEDVL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CGGACGCCCG GGTTTAGCCG CCACGTGAGT TCCTCGGTGT TAGCTGCAAG GCATAGTGGG 60
CGACATGTCG GCGACCGTGG CGGCTCGAAA GCGGGGAAAG TCAGCCTCAG GAGCCGGGGC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0031428--C:box C/D snoRNP complex
GO:0032040--C:small-subunit processome
GO:0030515--F:snoRNA binding
GO:0034511--F:U3 snoRNA binding
GO:0006364--P:rRNA processing

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000586	Aegilops tauschii	33.25	4.00e-55	208.00
IUUC-Aml-002072	Ailuropoda melanoleuca	93.71	0.00e+00	766.00
IUUC-Atr-002824	Amborella trichopoda	36.72	2.00e-68	252.00
IUUC-Apl-003264	Anas platyrhynchos	74.06	3.00e-166	577.00
IUUC-Aca-004898	Anolis carolinensis	78.12	2.00e-180	624.00
IUUC-Aly-005535	Arabidopsis lyrata	38.56	2.00e-66	246.00
IUUC-Ath-007003	Arabidopsis thaliana	38.03	5.00e-65	241.00
IUUC-Ago-007710	Ashbya gossypii	28.54	2.00e-55	209.00
IUUC-Acl-008345	Aspergillus clavatus	32.08	4.00e-54	205.00
IUUC-Afl-008718	Aspergillus flavus	31.03	4.00e-52	199.00
IUUC-Afu-008966	Aspergillus fumigatus	29.16	1.00e-51	197.00
IUUC-Ani-009214	Aspergillus nidulans	30.98	7.00e-55	208.00
IUUC-Ang-009774	Aspergillus niger	33.50	1.00e-56	213.00
IUUC-Aor-009956	Aspergillus oryzae	31.03	4.00e-52	199.00
IUUC-Ate-010449	Aspergillus terreus	29.82	5.00e-53	202.00
IUUC-Ame-011860	Astyanax mexicanus	70.99	6.00e-167	580.00
IUUC-Bgr-012213	Blumeria graminis	30.86	6.00e-62	231.00
IUUC-Bta-012698	Bos taurus	96.66	0.00e+00	742.00
IUUC-Bci-013973	Botrytis cinerea	27.87	1.00e-59	224.00
IUUC-Bdi-014790	Brachypodium distachyon	35.86	3.00e-62	232.00
IUUC-Bol-016068	Brassica oleracea	38.46	8.00e-67	247.00
IUUC-Bra-017410	Brassica rapa	37.93	6.00e-62	231.00
IUUC-Cel-018616	Caenorhabditis elegans	36.75	7.00e-72	264.00
IUUC-Cja-019532	Callithrix jacchus	93.03	0.00e+00	736.00
IUUC-Cfa-020961	Canis familiaris	89.52	0.00e+00	742.00
IUUC-Cpo-021527	Cavia porcellus	88.73	0.00e+00	736.00
IUUC-Csa-023106	Chlorocebus sabaeus	93.50	0.00e+00	743.00
IUUC-Cin-025670	Ciona intestinalis	51.15	1.00e-121	429.00
IUUC-Csv-026172	Ciona savignyi	51.41	2.00e-115	409.00
IUUC-Cgl-026619	Colletotrichum gloeosporioides	33.05	1.00e-64	240.00
IUUC-Cne-027070	Cryptococcus neoformans	28.87	7.00e-46	177.00
IUUC-Cme-027125	Cyanidioschyzon merolae	25.57	2.00e-32	133.00
IUUC-Dre-027919	Danio rerio	67.69	2.00e-160	558.00
IUUC-Dno-029684	Dasypus novemcinctus	94.27	4.00e-169	587.00
IUUC-Dor-030363	Dipodomys ordii	84.24	6.00e-102	363.00
IUUC-Dse-031503	Dothistroma septosporum	31.20	5.00e-60	225.00
IUUC-Dme-031979	Drosophila melanogaster	43.65	3.00e-97	348.00
IUUC-Eca-033735	Equus caballus	96.43	0.00e+00	741.00
IUUC-Fca-036193	Felis catus	93.97	0.00e+00	754.00
IUUC-Fal-037058	Ficedula albicollis	70.83	4.00e-171	594.00
IUUC-Fox-038036	Fusarium oxysporum	31.97	6.00e-65	241.00
IUUC-Fso-038298	Fusarium solani	32.25	9.00e-64	237.00
IUUC-Gmo-038796	Gadus morhua	63.89	8.00e-140	489.00
IUUC-Ggr-040074	Gaeumannomyces graminis	30.15	1.00e-52	201.00
IUUC-Gga-040743	Gallus gallus	77.03	5.00e-137	479.00
IUUC-Gac-042583	Gasterosteus aculeatus	62.08	9.00e-166	576.00
IUUC-Gma-042659	Glycine max	39.65	8.00e-80	290.00
IUUC-Ggo-045543	Gorilla gorilla	92.84	0.00e+00	745.00
IUUC-Hsa-047017	Homo sapiens	93.74	0.00e+00	745.00
IUUC-Hvu-047173	Hordeum vulgare	37.14	6.00e-67	248.00
IUUC-Itr-048062	Ictidomys tridecemlineatus	87.58	0.00e+00	734.00
IUUC-Kpa-049262	Komagataella pastoris	32.05	4.00e-59	222.00
IUUC-Lch-050566	Latimeria chalumnae	71.77	2.00e-154	538.00
IUUC-Lpe-051651	Leersia perrieri	35.46	4.00e-64	238.00
IUUC-Loc-051997	Lepisosteus oculatus	70.14	2.00e-165	575.00
IUUC-Lma-053182	Leptosphaeria maculans	29.13	1.00e-56	214.00
IUUC-Laf-054105	Loxodonta africana	92.31	0.00e+00	726.00
IUUC-Mcc-055215	Macaca mulatta	93.50	0.00e+00	744.00
IUUC-Meu-055943	Macropus eugenii	80.58	0.00e+00	657.00
IUUC-Mor-057069	Magnaporthe oryzae	32.31	2.00e-62	233.00
IUUC-Mpo-057358	Magnaporthe poae	29.85	6.00e-50	191.00
IUUC-Mtr-058209	Medicago truncatula	39.20	1.00e-77	283.00
IUUC-Mla-059043	Melampsora laricipopulina	27.65	4.00e-47	182.00
IUUC-Mga-060024	Meleagris gallopavo	73.87	5.00e-154	536.00
IUUC-Mvi-060371	Microbotryum violaceum	31.62	3.00e-66	246.00
IUUC-Mmr-061403	Microcebus murinus	93.63	0.00e+00	739.00
IUUC-Mdo-063026	Monodelphis domestica	82.28	0.00e+00	659.00
IUUC-Mmu-063646	Mus musculus	93.74	0.00e+00	743.00
IUUC-Mac-064801	Musa acuminata	37.64	2.00e-72	266.00
IUUC-Mpu-065760	Mustela putorius furo	95.76	0.00e+00	760.00
IUUC-Mlu-067963	Myotis lucifugus	95.29	0.00e+00	755.00
IUUC-Nfi-068288	Neosartorya fischeri	30.77	3.00e-55	209.00
IUUC-Ncr-068679	Neurospora crassa	31.94	2.00e-55	209.00
IUUC-Nle-069766	Nomascus leucogenys	85.29	0.00e+00	671.00
IUUC-Opr-070906	Ochotona princeps	92.81	0.00e+00	741.00
IUUC-Ont-071661	Oreochromis niloticus	68.54	1.00e-169	588.00
IUUC-Oan-073465	Ornithorhynchus anatinus	71.04	9.00e-148	516.00
IUUC-Ocu-074263	Oryctolagus cuniculus	94.03	0.00e+00	739.00
IUUC-Oba-075607	Oryza barthii	37.15	6.00e-60	224.00
IUUC-Ogl-077387	Oryza glaberrima	36.60	1.00e-63	236.00
IUUC-Ogu-078323	Oryza glumaepatula	37.17	6.00e-64	238.00
IUUC-Oin-079977	Oryza indica	31.83	9.00e-44	171.00
IUUC-Olo-080857	Oryza longistaminata	37.08	4.00e-64	238.00
IUUC-Ome-081568	Oryza meridionalis	37.08	2.00e-63	236.00
IUUC-Oni-082685	Oryza nivara	37.43	4.00e-67	248.00
IUUC-Opu-084049	Oryza punctata	37.70	8.00e-64	237.00
IUUC-Oru-084348	Oryza rufipogon	37.43	4.00e-67	248.00
IUUC-Osa-086076	Oryza sativa	37.43	4.00e-67	248.00
IUUC-Ola-086991	Oryzias latipes	66.98	4.00e-164	570.00
IUUC-Olu-087891	Ostreococcus lucimarinus	35.92	2.00e-65	242.00
IUUC-Oga-088991	Otolemur garnettii	92.13	0.00e+00	756.00
IUUC-Oar-090430	Ovis aries	94.90	0.00e+00	744.00
IUUC-Ptr-091359	Pan troglodytes	93.97	0.00e+00	746.00
IUUC-Pan-092499	Papio anubis	93.27	0.00e+00	742.00
IUUC-Pma-094447	Petromyzon marinus	59.48	9.00e-126	442.00
IUUC-Pno-095008	Phaeosphaeria nodorum	30.00	3.00e-60	226.00
IUUC-Ppa-095680	Physcomitrella patens	38.89	8.00e-77	280.00
IUUC-Pfo-096430	Poecilia formosa	68.15	9.00e-167	579.00
IUUC-Pab-097649	Pongo abelii	93.74	0.00e+00	743.00
IUUC-Pop-100055	Populus trichocarpa	40.43	6.00e-77	281.00
IUUC-Pca-100317	Procavia capensis	74.83	6.00e-131	460.00
IUUC-Ppe-101999	Prunus persica	39.44	4.00e-78	285.00
IUUC-Pva-103046	Pteropus vampyrus	95.02	0.00e+00	766.00
IUUC-Pgr-103655	Puccinia graminis	29.90	1.00e-52	201.00
IUUC-Ptt-103812	Puccinia triticina	31.77	3.00e-48	185.00
IUUC-Pte-104243	Pyrenophora teres	29.29	3.00e-53	202.00
IUUC-Pyt-104512	Pyrenophora triticirepentis	30.10	1.00e-56	213.00
IUUC-Rno-104973	Rattus norvegicus	93.27	0.00e+00	739.00
IUUC-Sce-106329	Saccharomyces cerevisiae	25.65	3.00e-50	192.00
IUUC-Sha-106941	Sarcophilus harrisii	83.59	0.00e+00	669.00
IUUC-Sja-107821	Schizosaccharomyces japonicus	32.19	1.00e-61	230.00
IUUC-Spo-108329	Schizosaccharomyces pombe	36.56	2.00e-72	266.00
IUUC-Ssl-108552	Sclerotinia sclerotiorum	28.70	3.00e-60	226.00
IUUC-Smo-109198	Selaginella moellendorffii	38.55	3.00e-64	238.00
IUUC-Sit-109694	Setaria italica	35.59	6.00e-70	257.00
IUUC-Sly-111294	Solanum lycopersicum	38.96	8.00e-78	284.00
IUUC-Stu-112747	Solanum tuberosum	39.48	4.00e-79	288.00
IUUC-Sar-113315	Sorex araneus	92.86	1.00e-73	270.00
IUUC-Sbi-114694	Sorghum bicolor	36.02	1.00e-70	260.00
IUUC-Sre-114937	Sporisorium reilianum	28.76	1.00e-63	237.00
IUUC-Tgu-117242	Taeniopygia guttata	71.31	2.00e-109	387.00
IUUC-Tru-118285	Takifugu rubripes	68.02	6.00e-167	580.00
IUUC-Tni-120368	Tetraodon nigroviridis	67.51	2.00e-160	558.00
IUUC-Tca-121724	Theobroma cacao	36.39	4.00e-70	258.00
IUUC-Tre-122106	Trichoderma reesei	33.48	8.00e-69	254.00
IUUC-Tvi-122526	Trichoderma virens	32.93	2.00e-68	253.00
IUUC-Tae-122939	Triticum aestivum	36.39	1.00e-65	243.00
IUUC-Tur-126548	Triticum urartu	36.39	2.00e-65	243.00
IUUC-Tme-126985	Tuber melanosporum	34.20	9.00e-63	234.00
IUUC-Tbe-127923	Tupaia belangeri	95.48	0.00e+00	738.00
IUUC-Ttr-129308	Tursiops truncatus	91.89	0.00e+00	701.00
IUUC-Uma-129472	Ustilago maydis	30.00	2.00e-58	220.00
IUUC-Vda-129910	Verticillium dahliae	30.66	6.00e-62	231.00
IUUC-Vvi-131683	Vitis vinifera	38.62	2.00e-83	302.00
IUUC-Xtr-132118	Xenopus tropicalis	65.18	2.00e-157	548.00
IUUC-Xma-133804	Xiphophorus maculatus	67.45	6.00e-164	570.00
IUUC-Yli-134639	Yarrowia lipolytica	32.78	5.00e-60	224.00
IUUC-Zma-135884	Zea mays	35.71	9.00e-70	257.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence