iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ppe-101237

Ensembl Protein ID

EMJ23140

UniProt Accession

M5XVH3; M5XVH3_PRUPE

Genbank Protein ID

EMJ23140.1

Protein Name

Katanin p80 WD40 repeat-containing subunit B1 homolog

Genbank Nucleotide ID

KB638913

Gene Name

PRUPE_ppa001553mg

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
PRUPE_ppa001553mg	EMJ23140	EMJ23140

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	7.90e-38	127.3	141	179
UBD/Beta-Prp	3.20e-59	201.0	14	256

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gHt +v++++f +d + +vsG+ D+t+k+WDl+ g+ll+
   Q: 141  GHTRGVNAIRFtPDgRWVVSGGEDNTVKLWDLTAGKLLH 179
           8***********99999******************9986 PP

UBD/Beta-Prp

   S: 8    hhksvitcvkf.spdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgd 107
           +h+s ++c+k+  +++++l+tg++d+++ +w + +++++ slsgh++++ +v+f++++ + + g+  +tik+wdl+  k+v+tl+gh ++  s++f+p g+
   Q: 14   AHSSTVNCLKIgRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHTSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCISVDFHPFGE 114
           799999*****99*********************************************999999999********************************** PP
   S: 108  klvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvklwd 208
           +++sGs d  +++wd++++ c++ t +gh++ vn +++ pdg+ +vsG+ D+tv+lWdl  gkll++++  h++++++++f++  + l++gs d+tvk+wd
   Q: 115  FFASGSLDTNLKIWDIRKKGCIH-TYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKC-HEGQIQCIDFHPHEFLLATGSADRTVKFWD 213
           ***********************.********************************************98.****************************** PP
   S: 209  lqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlr 252
           l+t e + +    t+ v+s+ fsp++  l++g  ++s++++  +
   Q: 214  LETFELIGSSGPETTGVRSLTFSPDGRALLCGL-HESLKVFSWE 256
           ***********************9999999995.7777775444 PP

Organism

Prunus persica

Functional Description
(View)

May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.

Protein Sequence
(Fasta)

MTTKRAYKLQ EFVAHSSTVN CLKIGRKSSR VLVTGGEDHK VNLWAIGKPN AILSLSGHTS 60
GIDSVSFDSS EVLVAAGAAS GTIKLWDLEE AKIVRTLTGH RSNCISVDFH PFGEFFASGS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TTCTTTGCCC ATGACTACTA AACGCGCTTA CAAGCTACGT ATCCTCCTCT CGATTTAATT 60
ATGTTCATGA AATTACCATA CAATCTCCCT CCCACACCTG CTGATTGCAC AATCTATATA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-0493--Microtubule
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR026962--Katanin_bsu1
IPR028021--Katanin_C-terminal
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF13925--Katanin_con80
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0008352--C:katanin complex
GO:0005874--C:microtubule
GO:0051013--P:microtubule severing

KEGG

pper:PRUPE_ppa001553mg

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000954	Aegilops tauschii	65.60	1.00e-169	590.00
IUUC-Aml-002187	Ailuropoda melanoleuca	51.83	5.00e-101	361.00
IUUC-Atr-002899	Amborella trichopoda	65.00	0.00e+00	1001.00
IUUC-Apl-003305	Anas platyrhynchos	52.54	7.00e-102	363.00
IUUC-Aca-004635	Anolis carolinensis	51.19	2.00e-91	328.00
IUUC-Aly-005711	Arabidopsis lyrata	61.28	0.00e+00	953.00
IUUC-Ath-007323	Arabidopsis thaliana	61.02	0.00e+00	961.00
IUUC-Acl-008307	Aspergillus clavatus	32.05	1.00e-29	123.00
IUUC-Bgr-012225	Blumeria graminis	30.87	8.00e-30	124.00
IUUC-Bta-012527	Bos taurus	52.49	5.00e-104	370.00
IUUC-Bdi-014552	Brachypodium distachyon	47.30	0.00e+00	704.00
IUUC-Bol-016374	Brassica oleracea	61.93	0.00e+00	954.00
IUUC-Bra-017390	Brassica rapa	59.95	0.00e+00	933.00
IUUC-Cja-019706	Callithrix jacchus	52.49	2.00e-103	369.00
IUUC-Cfa-020139	Canis familiaris	44.82	7.00e-97	347.00
IUUC-Cpo-021710	Cavia porcellus	52.82	7.00e-105	374.00
IUUC-Cre-022746	Chlamydomonas reinhardtii	43.04	1.00e-82	300.00
IUUC-Csa-023546	Chlorocebus sabaeus	52.92	2.00e-100	359.00
IUUC-Cin-025156	Ciona intestinalis	46.98	1.00e-87	316.00
IUUC-Csv-025962	Ciona savignyi	49.83	1.00e-87	315.00
IUUC-Dre-028215	Danio rerio	50.46	5.00e-104	371.00
IUUC-Dno-029314	Dasypus novemcinctus	52.82	9.00e-104	370.00
IUUC-Dor-030482	Dipodomys ordii	52.49	2.00e-104	372.00
IUUC-Dme-032188	Drosophila melanogaster	37.54	1.00e-57	216.00
IUUC-Eca-034143	Equus caballus	52.16	5.00e-101	360.00
IUUC-Fca-035924	Felis catus	52.82	3.00e-104	371.00
IUUC-Fal-037387	Ficedula albicollis	54.15	4.00e-106	377.00
IUUC-Gmo-038692	Gadus morhua	52.00	1.00e-102	366.00
IUUC-Gga-040597	Gallus gallus	52.16	2.00e-103	369.00
IUUC-Gac-042004	Gasterosteus aculeatus	53.16	6.00e-101	360.00
IUUC-Gma-044134	Glycine max	72.85	0.00e+00	1098.00
IUUC-Ggo-044761	Gorilla gorilla	52.49	1.00e-103	369.00
IUUC-Hsa-045698	Homo sapiens	52.49	6.00e-104	370.00
IUUC-Hvu-047649	Hordeum vulgare	74.95	0.00e+00	703.00
IUUC-Itr-048697	Ictidomys tridecemlineatus	52.49	4.00e-104	371.00
IUUC-Lch-049674	Latimeria chalumnae	53.33	4.00e-107	381.00
IUUC-Lpe-051554	Leersia perrieri	74.78	0.00e+00	716.00
IUUC-Loc-052623	Lepisosteus oculatus	52.49	9.00e-100	357.00
IUUC-Laf-054587	Loxodonta africana	52.16	2.00e-103	368.00
IUUC-Mcc-055851	Macaca mulatta	52.49	1.00e-103	369.00
IUUC-Meu-056704	Macropus eugenii	53.16	1.00e-104	372.00
IUUC-Mpo-057381	Magnaporthe poae	34.90	2.00e-27	116.00
IUUC-Mtr-058053	Medicago truncatula	71.73	0.00e+00	1077.00
IUUC-Mga-059608	Meleagris gallopavo	51.69	6.00e-101	360.00
IUUC-Mmr-061154	Microcebus murinus	52.49	7.00e-104	370.00
IUUC-Mdo-062365	Monodelphis domestica	52.82	1.00e-103	369.00
IUUC-Mmu-063754	Mus musculus	52.49	3.00e-104	371.00
IUUC-Mac-065100	Musa acuminata	63.77	0.00e+00	963.00
IUUC-Mpu-066245	Mustela putorius furo	53.16	2.00e-104	372.00
IUUC-Mlu-067692	Myotis lucifugus	52.68	6.00e-103	367.00
IUUC-Nle-070051	Nomascus leucogenys	52.16	1.00e-102	366.00
IUUC-Opr-070855	Ochotona princeps	52.16	4.00e-103	367.00
IUUC-Ont-071883	Oreochromis niloticus	52.49	4.00e-101	361.00
IUUC-Oan-073293	Ornithorhynchus anatinus	53.16	1.00e-100	359.00
IUUC-Ocu-074644	Oryctolagus cuniculus	52.49	2.00e-104	372.00
IUUC-Oba-075448	Oryza barthii	65.77	0.00e+00	630.00
IUUC-Obr-076385	Oryza brachyantha	75.87	0.00e+00	712.00
IUUC-Ogl-077427	Oryza glaberrima	76.19	0.00e+00	711.00
IUUC-Ogu-079022	Oryza glumaepatula	57.17	4.00e-157	547.00
IUUC-Oin-079811	Oryza indica	74.05	0.00e+00	700.00
IUUC-Olo-080245	Oryza longistaminata	74.26	0.00e+00	702.00
IUUC-Ome-081239	Oryza meridionalis	71.37	0.00e+00	655.00
IUUC-Oni-082640	Oryza nivara	65.77	0.00e+00	630.00
IUUC-Opu-083748	Oryza punctata	90.22	0.00e+00	645.00
IUUC-Oru-084609	Oryza rufipogon	65.77	0.00e+00	630.00
IUUC-Osa-085988	Oryza sativa	66.88	9.00e-169	586.00
IUUC-Ola-087483	Oryzias latipes	47.91	1.00e-94	339.00
IUUC-Oga-087964	Otolemur garnettii	52.49	4.00e-104	371.00
IUUC-Oar-089483	Ovis aries	52.16	4.00e-102	364.00
IUUC-Ptr-091387	Pan troglodytes	52.49	6.00e-104	370.00
IUUC-Pan-092623	Papio anubis	52.49	1.00e-103	369.00
IUUC-Psi-093830	Pelodiscus sinensis	52.49	2.00e-98	352.00
IUUC-Ppa-095379	Physcomitrella patens	80.78	2.00e-156	545.00
IUUC-Pfo-096755	Poecilia formosa	52.49	9.00e-101	360.00
IUUC-Pab-097564	Pongo abelii	52.49	3.00e-103	368.00
IUUC-Pop-099149	Populus trichocarpa	77.61	0.00e+00	1212.00
IUUC-Pca-100357	Procavia capensis	56.80	2.00e-76	279.00
IUUC-Pva-102397	Pteropus vampyrus	48.17	1.00e-91	329.00
IUUC-Rno-105349	Rattus norvegicus	52.49	3.00e-104	371.00
IUUC-Smo-109409	Selaginella moellendorffii	48.45	0.00e+00	707.00
IUUC-Sit-110360	Setaria italica	74.07	0.00e+00	729.00
IUUC-Sly-111307	Solanum lycopersicum	70.49	0.00e+00	1078.00
IUUC-Stu-112053	Solanum tuberosum	64.45	0.00e+00	1001.00
IUUC-Sar-112953	Sorex araneus	45.61	1.00e-57	216.00
IUUC-Sbi-114389	Sorghum bicolor	71.34	3.00e-144	504.00
IUUC-Ssc-115949	Sus scrofa	46.91	9.00e-49	187.00
IUUC-Tgu-117461	Taeniopygia guttata	53.49	1.00e-105	376.00
IUUC-Tru-117865	Takifugu rubripes	50.50	1.00e-94	340.00
IUUC-Tsy-119036	Tarsius syrichta	58.54	1.00e-40	159.00
IUUC-Tni-120903	Tetraodon nigroviridis	50.33	2.00e-93	335.00
IUUC-Tca-121185	Theobroma cacao	72.60	0.00e+00	1209.00
IUUC-Tae-125263	Triticum aestivum	75.38	0.00e+00	705.00
IUUC-Tur-126411	Triticum urartu	61.42	1.00e-165	576.00
IUUC-Ttr-128172	Tursiops truncatus	52.49	4.00e-104	371.00
IUUC-Vvi-131489	Vitis vinifera	77.24	0.00e+00	1216.00
IUUC-Xtr-132915	Xenopus tropicalis	51.99	3.00e-100	358.00
IUUC-Xma-134133	Xiphophorus maculatus	51.83	3.00e-98	351.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence