iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Eca-033866

Ensembl Protein ID

ENSECAP00000010397.1

UniProt Accession

F6R4M8; F6R4M8_HORSE

Protein Name

Uncharacterized protein

Gene Name

TNRC6C

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSECAG00000012486.1	ENSECAT00000013133.1	ENSECAP00000010397.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
UBD/Alpha-Helix/UBA	1.00e-05	25.7	941	974

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

UBD/Alpha-Helix/UBA

   S: 6    kleqlveMGFdreealqaLraannnleaAveyLl 39
           +++ql++MGF+re a +aL ++n nl+ A+  Ll
   Q: 941  LIRQLTDMGFPREPAEEALKSNNMNLDQAMSALL 974
           89***************************99887 PP

Organism

Equus caballus

Protein Sequence
(Fasta)

MATGSAQGNF TGHTKKTNGN NGTNGALVQS PSNQSALGAG GANGNGSAAR VWGVAAGSSS 60
GLPHCSLSGG DGKMDNMIGD GRSQNCWGAS NSNAGINLNL NPNANPAAWP VLGHEGAVAT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCTACAG GGAGTGCCCA GGGCAACTTC ACTGGACATA CTAAGAAGAC CAATGGCAAT 60
AATGGCACCA ATGGCGCACT CGTCCAAAGC CCTTCGAATC AGAGTGCCCT TGGAGCAGGG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR019486--Argonaute_hook_dom
IPR026805--GW182_M_dom
IPR012677--Nucleotide-bd_a/b_plait
IPR000504--RRM_dom
IPR032226--TNRC6_PABC-bd
IPR033499--TNRC6C
IPR015940--UBA
IPR009060--UBA-like

PROSITE

PS50030--UBA

Pfam

PF10427--Ago_hook
PF12938--M_domain
PF00076--RRM_1
PF16608--TNRC6-PABC_bdg
PF00627--UBA

SMART

SM00165--UBA

Gene Ontology

GO:0003676--F:nucleic acid binding
GO:0000166--F:nucleotide binding
GO:0035278--P:miRNA mediated inhibition of translation
GO:0060213--P:positive regulation of nuclear-transcribed mRNA poly(A) tail shortening

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001985	Ailuropoda melanoleuca	41.80	0.00e+00	746.00
IUUC-Apl-003191	Anas platyrhynchos	82.99	0.00e+00	2125.00
IUUC-Aca-004717	Anolis carolinensis	83.92	0.00e+00	2201.00
IUUC-Ame-010681	Astyanax mexicanus	51.26	0.00e+00	809.00
IUUC-Bta-012915	Bos taurus	37.24	2.00e-96	347.00
IUUC-Cja-019614	Callithrix jacchus	89.46	0.00e+00	2172.00
IUUC-Cfa-020452	Canis familiaris	36.93	2.00e-103	371.00
IUUC-Cpo-021452	Cavia porcellus	88.27	0.00e+00	2259.00
IUUC-Csa-023169	Chlorocebus sabaeus	41.52	0.00e+00	733.00
IUUC-Cho-024655	Choloepus hoffmanni	41.44	3.00e-119	423.00
IUUC-Dre-028059	Danio rerio	56.39	0.00e+00	1062.00
IUUC-Dno-029734	Dasypus novemcinctus	40.85	0.00e+00	723.00
IUUC-Dor-030671	Dipodomys ordii	43.64	0.00e+00	673.00
IUUC-Dme-032014	Drosophila melanogaster	40.00	9.00e-31	129.00
IUUC-Ete-032774	Echinops telfairi	81.97	0.00e+00	1437.00
IUUC-Eeu-034572	Erinaceus europaeus	51.19	2.00e-40	161.00
IUUC-Fal-036856	Ficedula albicollis	82.37	0.00e+00	1999.00
IUUC-Gga-040531	Gallus gallus	86.73	0.00e+00	2118.00
IUUC-Gac-041681	Gasterosteus aculeatus	51.56	0.00e+00	875.00
IUUC-Ggo-045143	Gorilla gorilla	89.41	0.00e+00	2202.00
IUUC-Hsa-045913	Homo sapiens	90.96	0.00e+00	2200.00
IUUC-Lch-049619	Latimeria chalumnae	44.46	1.00e-175	611.00
IUUC-Loc-052289	Lepisosteus oculatus	69.59	0.00e+00	1059.00
IUUC-Laf-053607	Loxodonta africana	89.85	0.00e+00	2276.00
IUUC-Mcc-055342	Macaca mulatta	90.90	0.00e+00	2153.00
IUUC-Meu-056275	Macropus eugenii	48.83	5.00e-101	363.00
IUUC-Mtr-058185	Medicago truncatula	42.22	5.00e-03	36.20
IUUC-Mga-059241	Meleagris gallopavo	38.85	2.00e-120	427.00
IUUC-Mmr-061348	Microcebus murinus	36.98	5.00e-100	360.00
IUUC-Mdo-062155	Monodelphis domestica	84.40	0.00e+00	2207.00
IUUC-Mmu-064259	Mus musculus	41.92	1.00e-109	392.00
IUUC-Mpu-066534	Mustela putorius furo	50.51	4.00e-83	303.00
IUUC-Mlu-067834	Myotis lucifugus	41.06	0.00e+00	763.00
IUUC-Nle-069168	Nomascus leucogenys	41.04	0.00e+00	711.00
IUUC-Opr-070976	Ochotona princeps	39.67	7.00e-60	226.00
IUUC-Ocu-074534	Oryctolagus cuniculus	73.97	0.00e+00	735.00
IUUC-Oga-088116	Otolemur garnettii	41.45	0.00e+00	743.00
IUUC-Oar-090041	Ovis aries	36.93	5.00e-95	343.00
IUUC-Ptr-091135	Pan troglodytes	88.82	0.00e+00	2140.00
IUUC-Pan-092665	Papio anubis	88.77	0.00e+00	2126.00
IUUC-Psi-093057	Pelodiscus sinensis	84.61	0.00e+00	2112.00
IUUC-Pma-094508	Petromyzon marinus	54.66	1.00e-53	204.00
IUUC-Pfo-097115	Poecilia formosa	53.98	1.00e-179	624.00
IUUC-Pab-097935	Pongo abelii	41.23	0.00e+00	733.00
IUUC-Pca-100481	Procavia capensis	78.84	0.00e+00	930.00
IUUC-Pva-102376	Pteropus vampyrus	43.90	4.00e-60	227.00
IUUC-Rno-105508	Rattus norvegicus	37.80	2.00e-100	361.00
IUUC-Sar-113036	Sorex araneus	61.08	6.00e-41	163.00
IUUC-Ssc-115574	Sus scrofa	72.26	0.00e+00	1529.00
IUUC-Tgu-117233	Taeniopygia guttata	86.68	0.00e+00	2058.00
IUUC-Tru-117725	Takifugu rubripes	55.06	0.00e+00	973.00
IUUC-Tsy-118786	Tarsius syrichta	35.17	5.00e-64	240.00
IUUC-Tbe-127989	Tupaia belangeri	82.99	0.00e+00	880.00
IUUC-Ttr-128518	Tursiops truncatus	92.42	0.00e+00	2357.00
IUUC-Vpa-130230	Vicugna pacos	44.27	1.00e-74	276.00
IUUC-Xtr-132265	Xenopus tropicalis	72.99	0.00e+00	1782.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence