iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Bol-016374

Ensembl Protein ID

Bo7g097650.1

UniProt Accession

A0A0D3DDB4; A0A0D3DDB4_BRAOL

Protein Name

Katanin p80 WD40 repeat-containing subunit B1 homolog

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Bo7g097650	Bo7g097650.1	Bo7g097650.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	6.50e-36	122.3	142	179
UBD/Beta-Prp	7.20e-56	191.1	15	253

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvll 36
           gHt +v+ l+f +d + +vsG+ D+ +kvWDl+ g+ll
   Q: 142  GHTRGVNVLRFtPDgRWVVSGGEDNIVKVWDLTAGKLL 179
           8***********99999****************99976 PP

UBD/Beta-Prp

   S: 8    hhksvitcvkf.spdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfs 103
           +h++ ++c+k+  +++++l+tg++d+++ +w + +++++ sl+gh++++ +v+f+ ++ + + g+  +tik+wdl+  k v+tl+gh ++  s++f+
   Q: 15   AHSAAVNCLKIgRKSSRVLVTGGEDHKVNLWAIGKPNAILSLYGHSSGIDSVTFDASEVLVAAGAASGTIKLWDLEEAKLVRTLTGHRSNCISVDFH 111
           789999*****99*********************************************999999999****************************** PP
   S: 104  psgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsl 200
           p g++++sGs d  +++wdl+++  ++ t +gh++ vn++++ pdg+ +vsG+ D++v++Wdl  gkll++++  h+++++sl+f++  + l++gs 
   Q: 112  PFGEFFASGSLDTNLKIWDLRKKGPIH-TYKGHTRGVNVLRFTPDGRWVVSGGEDNIVKVWDLTAGKLLTEFKC-HEGQIQSLDFHPHEFLLATGSA 206
           ***************************.********************************************98.********************** PP
   S: 201  dgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiri 248
           d+tvk+wdl+t e + +    t+ v+++ f p+++ +++g   +s++i
   Q: 207  DRTVKFWDLETFELIGSGGPETSGVRCLSFNPDGKTVLCGL-QESLKI 253
           ************************************99996.444554 PP

Organism

Brassica oleracea

Functional Description
(View)

May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.

Protein Sequence
(Fasta)

MTSTKRAYKL QEFVAHSAAV NCLKIGRKSS RVLVTGGEDH KVNLWAIGKP NAILSLYGHS 60
SGIDSVTFDA SEVLVAAGAA SGTIKLWDLE EAKLVRTLTG HRSNCISVDF HPFGEFFASG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGACTTCTA CCAAGCGAGC CTACAAGCTA CGTATCCTTT TACATGTCTT CTCTTTGGTA 60
TTCTCTTTTA GGGTTTGATC TAAGAGTCCT TGATTAGCTT AATCTCCTGC TTTTATTCTT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-0493--Microtubule
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR026962--Katanin_bsu1
IPR028021--Katanin_C-terminal
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF13925--Katanin_con80
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0008352--C:katanin complex
GO:0005874--C:microtubule
GO:0051013--P:microtubule severing

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000954	Aegilops tauschii	51.55	4.00e-150	526.00
IUUC-Atr-002899	Amborella trichopoda	53.87	0.00e+00	825.00
IUUC-Aly-005711	Arabidopsis lyrata	89.74	0.00e+00	1392.00
IUUC-Ath-007606	Arabidopsis thaliana	89.62	0.00e+00	1414.00
IUUC-Bdi-014652	Brachypodium distachyon	60.11	0.00e+00	627.00
IUUC-Bra-017068	Brassica rapa	95.94	0.00e+00	1528.00
IUUC-Cfa-020139	Canis familiaris	42.82	4.00e-89	322.00
IUUC-Cre-022746	Chlamydomonas reinhardtii	42.86	8.00e-79	288.00
IUUC-Gma-044134	Glycine max	58.13	0.00e+00	886.00
IUUC-Hvu-047649	Hordeum vulgare	59.09	2.00e-178	619.00
IUUC-Lch-049674	Latimeria chalumnae	52.01	5.00e-103	368.00
IUUC-Lpe-051554	Leersia perrieri	61.24	0.00e+00	640.00
IUUC-Loc-052623	Lepisosteus oculatus	48.08	5.00e-98	351.00
IUUC-Mpo-057381	Magnaporthe poae	34.38	4.00e-26	113.00
IUUC-Mtr-058053	Medicago truncatula	58.01	0.00e+00	881.00
IUUC-Mga-059608	Meleagris gallopavo	50.00	6.00e-97	348.00
IUUC-Mac-065100	Musa acuminata	51.70	0.00e+00	785.00
IUUC-Oba-075448	Oryza barthii	83.71	2.00e-168	586.00
IUUC-Obr-076385	Oryza brachyantha	60.63	0.00e+00	636.00
IUUC-Ogl-077427	Oryza glaberrima	60.49	0.00e+00	635.00
IUUC-Oin-079811	Oryza indica	58.97	4.00e-180	624.00
IUUC-Olo-080245	Oryza longistaminata	58.97	4.00e-180	624.00
IUUC-Ome-081239	Oryza meridionalis	79.20	3.00e-167	582.00
IUUC-Oni-082640	Oryza nivara	83.71	2.00e-168	586.00
IUUC-Opu-083748	Oryza punctata	82.19	9.00e-172	597.00
IUUC-Oru-084609	Oryza rufipogon	83.71	2.00e-168	586.00
IUUC-Ola-087483	Oryzias latipes	47.67	2.00e-91	329.00
IUUC-Ppa-095379	Physcomitrella patens	77.85	5.00e-148	518.00
IUUC-Pfo-096755	Poecilia formosa	51.99	1.00e-99	357.00
IUUC-Pop-099149	Populus trichocarpa	62.17	0.00e+00	980.00
IUUC-Ppe-101237	Prunus persica	62.05	0.00e+00	977.00
IUUC-Smo-109409	Selaginella moellendorffii	61.45	1.00e-155	543.00
IUUC-Sit-110360	Setaria italica	60.75	0.00e+00	636.00
IUUC-Sly-111307	Solanum lycopersicum	57.80	0.00e+00	892.00
IUUC-Stu-112053	Solanum tuberosum	54.16	0.00e+00	849.00
IUUC-Ssc-115949	Sus scrofa	45.68	6.00e-47	181.00
IUUC-Tni-120903	Tetraodon nigroviridis	48.34	9.00e-91	327.00
IUUC-Tca-121185	Theobroma cacao	61.46	0.00e+00	1021.00
IUUC-Tae-125307	Triticum aestivum	59.82	4.00e-179	621.00
IUUC-Tur-126411	Triticum urartu	50.79	2.00e-144	506.00
IUUC-Vvi-131489	Vitis vinifera	61.27	0.00e+00	976.00
IUUC-Xma-134133	Xiphophorus maculatus	50.99	6.00e-97	348.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence