iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sit-110360

Ensembl Protein ID

Si021140m

UniProt Accession

K3Z3M2; K3Z3M2_SETIT

Genbank Protein ID

KQL12779.1

Protein Name

Katanin p80 WD40 repeat-containing subunit B1 homolog

Genbank Nucleotide ID

CM003530

Gene Name

LOC101767146; SETIT_021140mg

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Si021140m.g	Si021140m	Si021140m

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	9.30e-39	130.7	143	181
UBD/Beta-Prp	2.40e-58	198.6	15	265

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gHt +v++++f +d + +vsG+ D+t+k+WDl+ g+ll+
   Q: 143  GHTRGVNAIRFtPDgRWVVSGGEDNTVKLWDLTAGKLLH 181
           8***********99999******************9987 PP

UBD/Beta-Prp

   S: 7    ghhksvitcvkf.spdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfsps 105
            +h+s ++c+k+  + +++l+tg++d+++ +w + +++ + slsgh+++v +v f++++ + + g+  +tik+wdl+  k+v+tl+gh ++ +s++f+p 
   Q: 15   VAHSSNVNCLKIgRKTSRVLVTGGEDHKVNLWAIGKPNSILSLSGHTSAVESVGFDSTEVFVAAGAASGTIKLWDLEEAKIVRTLTGHRSNCMSVDFHPF 114
           478999999***999999****************************************9999999999******************************** PP
   S: 106  gdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvk 205
           g++++sGs d  +++wd++ + c++ t +gh++ vn +++ pdg+ +vsG+ D+tv+lWdl  gkll++++  h++++++++f++  + l++gs d+tvk
   Q: 115  GEFFASGSLDTNLKIWDIRRKNCIH-TYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHEFKC-HEGQIQCIDFHPHEFLLATGSADKTVK 212
           ************************9.********************************************98.*************************** PP
   S: 206  lwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllkt 259
           +wdl+t e + +    t+ v+s+ f p++  l++g  ++s++++  +   +  t
   Q: 213  FWDLETFELIGSTGPETTGVRSMTFNPDGRSLLCG-LHESLKVFSWEPIRCHDT 265
           **************************999999998.577777765555555544 PP

Organism

Setaria italica

Functional Description
(View)

May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.

Protein Sequence
(Fasta)

MTTNTKRAYK LQEFVAHSSN VNCLKIGRKT SRVLVTGGED HKVNLWAIGK PNSILSLSGH 60
TSAVESVGFD STEVFVAAGA ASGTIKLWDL EEAKIVRTLT GHRSNCMSVD FHPFGEFFAS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CGGGAGTGTG TACGGCCGCT TCGTGCTGGG GGCAGGCGCG GAGCGAGATC CGGGCCGGAA 60
GGTGCGGGGG GTCTCGAGGG TGGCGCCGTG GCGTCGGCGT GATCTGAAAT GAGATTGGGC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-0493--Microtubule
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR026962--Katanin_bsu1
IPR028021--Katanin_C-terminal
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF13925--Katanin_con80
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0008352--C:katanin complex
GO:0005874--C:microtubule
GO:0051013--P:microtubule severing

KEGG

sita:101767146

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000954	Aegilops tauschii	70.33	0.00e+00	1300.00
IUUC-Aml-002187	Ailuropoda melanoleuca	54.18	2.00e-103	369.00
IUUC-Atr-002899	Amborella trichopoda	69.44	0.00e+00	668.00
IUUC-Apl-003305	Anas platyrhynchos	52.54	2.00e-102	365.00
IUUC-Aca-004635	Anolis carolinensis	52.35	1.00e-92	333.00
IUUC-Aly-005711	Arabidopsis lyrata	64.02	0.00e+00	641.00
IUUC-Ath-007606	Arabidopsis thaliana	63.82	0.00e+00	639.00
IUUC-Acl-008307	Aspergillus clavatus	32.82	1.00e-30	126.00
IUUC-Bta-012527	Bos taurus	54.85	1.00e-106	379.00
IUUC-Bdi-014652	Brachypodium distachyon	82.32	0.00e+00	1536.00
IUUC-Bol-016374	Brassica oleracea	60.68	0.00e+00	627.00
IUUC-Bra-017068	Brassica rapa	48.19	0.00e+00	743.00
IUUC-Cja-019706	Callithrix jacchus	54.85	7.00e-106	377.00
IUUC-Cfa-020139	Canis familiaris	47.04	4.00e-99	354.00
IUUC-Cpo-021710	Cavia porcellus	54.52	3.00e-106	378.00
IUUC-Cre-022746	Chlamydomonas reinhardtii	44.98	1.00e-84	306.00
IUUC-Csa-023546	Chlorocebus sabaeus	54.67	2.00e-102	365.00
IUUC-Cin-025156	Ciona intestinalis	47.51	2.00e-89	322.00
IUUC-Csv-025962	Ciona savignyi	50.34	8.00e-90	322.00
IUUC-Dre-028215	Danio rerio	52.63	6.00e-104	371.00
IUUC-Dno-029314	Dasypus novemcinctus	55.18	4.00e-106	378.00
IUUC-Dor-030482	Dipodomys ordii	54.85	5.00e-107	381.00
IUUC-Dme-032188	Drosophila melanogaster	38.71	2.00e-59	223.00
IUUC-Eca-034143	Equus caballus	54.52	2.00e-103	369.00
IUUC-Fca-035924	Felis catus	55.18	1.00e-106	379.00
IUUC-Fal-037387	Ficedula albicollis	53.47	5.00e-106	377.00
IUUC-Gmo-038692	Gadus morhua	53.00	1.00e-103	369.00
IUUC-Gga-040597	Gallus gallus	53.85	2.00e-105	375.00
IUUC-Gac-042004	Gasterosteus aculeatus	48.55	5.00e-100	357.00
IUUC-Gma-044322	Glycine max	76.60	0.00e+00	700.00
IUUC-Ggo-044761	Gorilla gorilla	54.85	6.00e-106	377.00
IUUC-Hsa-045698	Homo sapiens	52.85	2.00e-106	379.00
IUUC-Hvu-047649	Hordeum vulgare	80.56	0.00e+00	1510.00
IUUC-Itr-048697	Ictidomys tridecemlineatus	54.85	1.00e-106	380.00
IUUC-Lch-049674	Latimeria chalumnae	48.39	6.00e-109	387.00
IUUC-Lpe-051554	Leersia perrieri	80.49	0.00e+00	1537.00
IUUC-Loc-052623	Lepisosteus oculatus	50.30	1.00e-101	363.00
IUUC-Laf-054587	Loxodonta africana	54.52	8.00e-106	377.00
IUUC-Mcc-055851	Macaca mulatta	54.85	6.00e-106	377.00
IUUC-Meu-056704	Macropus eugenii	54.52	6.00e-106	377.00
IUUC-Mtr-058053	Medicago truncatula	75.50	0.00e+00	698.00
IUUC-Mga-059608	Meleagris gallopavo	52.36	2.00e-102	366.00
IUUC-Mmr-061154	Microcebus murinus	54.85	3.00e-106	378.00
IUUC-Mdo-062365	Monodelphis domestica	54.85	1.00e-105	376.00
IUUC-Mmu-063754	Mus musculus	54.37	4.00e-107	381.00
IUUC-Mac-064439	Musa acuminata	50.31	0.00e+00	720.00
IUUC-Mpu-066245	Mustela putorius furo	55.52	7.00e-107	380.00
IUUC-Mlu-067692	Myotis lucifugus	54.22	6.00e-106	377.00
IUUC-Nle-070051	Nomascus leucogenys	52.72	5.00e-105	374.00
IUUC-Opr-070855	Ochotona princeps	54.18	2.00e-105	375.00
IUUC-Ont-071883	Oreochromis niloticus	51.16	5.00e-99	354.00
IUUC-Oan-073293	Ornithorhynchus anatinus	55.16	2.00e-102	366.00
IUUC-Ocu-074644	Oryctolagus cuniculus	54.85	8.00e-107	380.00
IUUC-Oba-075448	Oryza barthii	64.47	0.00e+00	1082.00
IUUC-Obr-076385	Oryza brachyantha	82.64	0.00e+00	1540.00
IUUC-Ogl-077427	Oryza glaberrima	82.53	0.00e+00	1546.00
IUUC-Ogu-078428	Oryza glumaepatula	58.81	0.00e+00	920.00
IUUC-Oin-079811	Oryza indica	81.28	0.00e+00	1535.00
IUUC-Olo-080245	Oryza longistaminata	78.32	0.00e+00	1456.00
IUUC-Ome-081239	Oryza meridionalis	78.58	0.00e+00	1419.00
IUUC-Oni-082640	Oryza nivara	64.47	0.00e+00	1082.00
IUUC-Opu-083748	Oryza punctata	77.21	0.00e+00	1435.00
IUUC-Oru-084609	Oryza rufipogon	64.47	0.00e+00	1082.00
IUUC-Osa-085988	Oryza sativa	77.64	0.00e+00	1422.00
IUUC-Ola-087483	Oryzias latipes	49.67	1.00e-94	340.00
IUUC-Oga-087964	Otolemur garnettii	54.85	2.00e-106	379.00
IUUC-Oar-089483	Ovis aries	54.52	1.00e-104	372.00
IUUC-Ptr-091387	Pan troglodytes	52.85	1.00e-106	379.00
IUUC-Pan-092623	Papio anubis	54.85	6.00e-106	377.00
IUUC-Psi-093830	Pelodiscus sinensis	54.45	2.00e-100	359.00
IUUC-Ppa-095379	Physcomitrella patens	82.67	2.00e-157	548.00
IUUC-Pfo-096755	Poecilia formosa	51.66	2.00e-99	356.00
IUUC-Pab-097564	Pongo abelii	54.85	1.00e-105	376.00
IUUC-Pop-099149	Populus trichocarpa	67.11	0.00e+00	695.00
IUUC-Pca-100357	Procavia capensis	58.33	2.00e-77	282.00
IUUC-Ppe-101237	Prunus persica	74.17	0.00e+00	717.00
IUUC-Pva-102397	Pteropus vampyrus	50.50	1.00e-93	336.00
IUUC-Rno-105349	Rattus norvegicus	54.37	4.00e-107	381.00
IUUC-Sly-111307	Solanum lycopersicum	72.47	0.00e+00	684.00
IUUC-Stu-112462	Solanum tuberosum	71.27	0.00e+00	657.00
IUUC-Sar-112953	Sorex araneus	46.49	2.00e-58	219.00
IUUC-Ssc-115949	Sus scrofa	50.00	6.00e-51	194.00
IUUC-Tgu-117461	Taeniopygia guttata	53.47	2.00e-106	379.00
IUUC-Tru-117865	Takifugu rubripes	46.47	8.00e-93	334.00
IUUC-Tsy-119036	Tarsius syrichta	60.33	4.00e-41	161.00
IUUC-Tni-120903	Tetraodon nigroviridis	46.63	2.00e-92	333.00
IUUC-Tca-121185	Theobroma cacao	54.63	0.00e+00	936.00
IUUC-Tae-125307	Triticum aestivum	82.18	0.00e+00	1533.00
IUUC-Tur-126411	Triticum urartu	71.12	0.00e+00	1280.00
IUUC-Ttr-128172	Tursiops truncatus	54.85	9.00e-107	380.00
IUUC-Vvi-131489	Vitis vinifera	75.88	0.00e+00	715.00
IUUC-Xtr-132915	Xenopus tropicalis	52.98	3.00e-101	362.00
IUUC-Xma-134133	Xiphophorus maculatus	50.99	5.00e-97	348.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence