iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Stu-112462

Ensembl Protein ID

PGSC0003DMT400056446

UniProt Accession

M1BZF9; M1BZF9_SOLTU

Protein Name

Katanin p80 WD40 repeat-containing subunit B1 homolog

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
PGSC0003DMG401021929	PGSC0003DMT400056446	PGSC0003DMT400056446

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	4.40e-37	125.7	151	189
UBD/Beta-Prp	1.60e-58	199.5	23	265

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gH+ +v++++f +d + +vsG+ D+t+k+WDl+ g+ll+
   Q: 151  GHSRGVNAIRFtPDgRWVVSGGEDNTVKLWDLTAGKLLH 189
           8***********99999******************9986 PP

UBD/Beta-Prp

   S: 7    ghhksvitcvkf.spdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghe 94
            +h+  ++c+k+  +++++l+tg++d+++ +w + +++++ slsgh++++ +v+f++++ + + g+  +tik+wdl+  k+v+tl+gh 
   Q: 23   VAHSLSVNCLKIgRKSSRVLLTGGEDHKVNLWAIGKPNAILSLSGHSSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTGHR 111
           579999******99*********************************************999999999********************* PP
   S: 95   dsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsv 183
           ++  sl+f+p g++++sGs d  +++wd++ + c++ t +gh++ vn +++ pdg+ +vsG+ D+tv+lWdl  gkll++++  h++++
   Q: 112  SNCISLDFHPFGEFFASGSLDTNLKIWDIRRKGCIH-TYKGHSRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKC-HEGQI 198
           ************************************.********************************************98.***** PP
   S: 184  yslsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiri..W 249
           ++++f++  + l++gs d+tvk+wdl+t e + +    t+ v+++ f p++  l++g  ++s+++  W
   Q: 199  QCIDFHPHEFLLATGSADRTVKFWDLETFELIGSSGPETSGVRCMTFNPDGRTLLCGL-HESLKVcsW 265
           ************************************************9999999995.666666445 PP

Organism

Solanum tuberosum

Functional Description
(View)

May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.

Protein Sequence
(Fasta)

MVKVEDLNQI LENLDNTVTE EFVAHSLSVN CLKIGRKSSR VLLTGGEDHK VNLWAIGKPN 60
AILSLSGHSS GIDSVSFDSS EVLVAAGAAS GTIKLWDLEE AKIVRTLTGH RSNCISLDFH 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGTATTTC TTAGTTTGTT GTTTGCTTTG CTGGAAAATG TGGAGACATA CCTTGGAATT 60
TGCTTCTATC TAGTGGATAG AGAATAGGAA TAGTATTATT CTTCTTGTGG ATCTTAATAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-0493--Microtubule
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR026962--Katanin_bsu1
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0008352--C:katanin complex
GO:0005874--C:microtubule
GO:0051013--P:microtubule severing

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000954	Aegilops tauschii	60.04	8.00e-162	563.00
IUUC-Aml-002187	Ailuropoda melanoleuca	51.37	5.00e-96	343.00
IUUC-Apl-003305	Anas platyrhynchos	53.08	3.00e-100	358.00
IUUC-Aca-004635	Anolis carolinensis	52.19	7.00e-90	323.00
IUUC-Bta-012527	Bos taurus	52.40	4.00e-99	354.00
IUUC-Bdi-014652	Brachypodium distachyon	69.27	0.00e+00	655.00
IUUC-Cja-019706	Callithrix jacchus	52.40	1.00e-98	352.00
IUUC-Cpo-021710	Cavia porcellus	52.74	6.00e-100	357.00
IUUC-Dre-028215	Danio rerio	52.56	7.00e-99	353.00
IUUC-Dno-029314	Dasypus novemcinctus	52.05	2.00e-98	352.00
IUUC-Dor-030482	Dipodomys ordii	52.40	1.00e-99	355.00
IUUC-Dme-032188	Drosophila melanogaster	36.95	9.00e-56	210.00
IUUC-Eca-034143	Equus caballus	52.05	4.00e-96	344.00
IUUC-Fca-035924	Felis catus	52.05	5.00e-99	353.00
IUUC-Fal-037387	Ficedula albicollis	52.74	3.00e-100	358.00
IUUC-Gmo-038692	Gadus morhua	51.44	5.00e-101	360.00
IUUC-Gga-040597	Gallus gallus	51.03	1.00e-98	353.00
IUUC-Ggo-044761	Gorilla gorilla	52.40	8.00e-99	353.00
IUUC-Hsa-045698	Homo sapiens	52.40	5.00e-99	353.00
IUUC-Hvu-047649	Hordeum vulgare	68.43	0.00e+00	645.00
IUUC-Itr-048697	Ictidomys tridecemlineatus	52.40	2.00e-99	355.00
IUUC-Lpe-051554	Leersia perrieri	70.51	0.00e+00	665.00
IUUC-Loc-052623	Lepisosteus oculatus	49.69	1.00e-96	346.00
IUUC-Laf-054587	Loxodonta africana	52.05	2.00e-98	352.00
IUUC-Mcc-055851	Macaca mulatta	52.40	8.00e-99	353.00
IUUC-Mga-059608	Meleagris gallopavo	51.70	5.00e-99	353.00
IUUC-Mmr-061154	Microcebus murinus	52.40	8.00e-99	353.00
IUUC-Mmu-063754	Mus musculus	52.40	2.00e-99	355.00
IUUC-Mac-064439	Musa acuminata	68.21	0.00e+00	692.00
IUUC-Mlu-067692	Myotis lucifugus	52.40	1.00e-98	352.00
IUUC-Nle-070051	Nomascus leucogenys	52.05	9.00e-98	349.00
IUUC-Ont-071883	Oreochromis niloticus	51.19	1.00e-95	343.00
IUUC-Ocu-074644	Oryctolagus cuniculus	52.40	3.00e-99	355.00
IUUC-Oba-075448	Oryza barthii	57.90	2.00e-175	608.00
IUUC-Obr-076385	Oryza brachyantha	71.02	0.00e+00	665.00
IUUC-Ogl-077427	Oryza glaberrima	70.80	0.00e+00	663.00
IUUC-Ogu-079022	Oryza glumaepatula	54.81	1.00e-149	522.00
IUUC-Oin-079811	Oryza indica	70.70	0.00e+00	664.00
IUUC-Olo-080245	Oryza longistaminata	70.93	0.00e+00	668.00
IUUC-Ome-081239	Oryza meridionalis	67.71	0.00e+00	630.00
IUUC-Oni-082640	Oryza nivara	57.90	2.00e-175	608.00
IUUC-Opu-083748	Oryza punctata	67.56	5.00e-180	623.00
IUUC-Oru-084609	Oryza rufipogon	57.90	2.00e-175	608.00
IUUC-Osa-085988	Oryza sativa	61.73	5.00e-156	543.00
IUUC-Ola-087483	Oryzias latipes	46.53	3.00e-90	324.00
IUUC-Oga-087964	Otolemur garnettii	52.40	3.00e-99	354.00
IUUC-Oar-089483	Ovis aries	52.05	3.00e-97	348.00
IUUC-Ptr-091387	Pan troglodytes	52.40	5.00e-99	353.00
IUUC-Pan-092623	Papio anubis	52.40	8.00e-99	353.00
IUUC-Psi-093830	Pelodiscus sinensis	52.92	3.00e-95	341.00
IUUC-Ppa-095379	Physcomitrella patens	69.62	3.00e-154	538.00
IUUC-Pfo-096755	Poecilia formosa	51.88	2.00e-97	349.00
IUUC-Pab-097564	Pongo abelii	52.40	2.00e-98	352.00
IUUC-Pva-102397	Pteropus vampyrus	47.95	2.00e-86	312.00
IUUC-Rno-105349	Rattus norvegicus	52.40	2.00e-99	355.00
IUUC-Smo-109379	Selaginella moellendorffii	67.51	3.00e-161	561.00
IUUC-Sit-110360	Setaria italica	71.27	0.00e+00	675.00
IUUC-Sar-112953	Sorex araneus	46.05	3.00e-57	214.00
IUUC-Ssc-115949	Sus scrofa	47.53	5.00e-48	184.00
IUUC-Tgu-117461	Taeniopygia guttata	52.74	1.00e-100	359.00
IUUC-Tru-117865	Takifugu rubripes	49.15	1.00e-89	323.00
IUUC-Tni-120903	Tetraodon nigroviridis	49.32	5.00e-89	320.00
IUUC-Tae-125263	Triticum aestivum	68.37	0.00e+00	643.00
IUUC-Tur-126411	Triticum urartu	60.68	1.00e-160	559.00
IUUC-Ttr-128172	Tursiops truncatus	52.40	2.00e-99	355.00
IUUC-Xma-134133	Xiphophorus maculatus	51.19	5.00e-95	340.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence