iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSRNOG00000011268.8	ENSRNOT00000024732.8	ENSRNOP00000024732.5
ENSRNOG00000011268.8	ENSRNOT00000067892.4	ENSRNOP00000060241.2

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC	RAID2
Post-translational Modifications (PTMs)
PhosphositePlus
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/PHD	9.10e-17	61.4	342	387

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/PHD

   S: 2    kvClvCgeggedekslveCekCrewfHpaClklsveeelpnsekwiCpkCrs 53
           ++C vC++gge    ++ C+ C +++H  Cl ++  e+ p+ + w Cp C++
   Q: 342  DYCEVCQQGGE----IILCDTCPRAYHLVCLDPE-LEKAPEGK-WSCPHCEK 387
           79*********....9******************.*******7.******86 PP

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MRGPLGTEEE LPRLFAEEME NEEEMSEEED GGLEGFEDFF PAEPVSLPKK KPKKLKESKS 60
KGKRKKKEGS NDELSENEED LEEKSESEGS DYSPTKKKKK KLKEKKEKKA KRKKRDEDEE 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TCCCCTCCCC CCCGCGCCGG GCATGCGGGG CCCGCTGGGC ACCGAGGAGG AGCTGCCGCG 60
GCTGTTCGCG GAGGAGATGG AGAACGAGGA GGAGATGTCA GGTGAGGGGG CGCGGGACCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR012957--CHD_C2
IPR012958--CHD_N
IPR000953--Chromo/chromo_shadow_dom
IPR023780--Chromo_domain
IPR016197--Chromodomain-like
IPR002464--DNA/RNA_helicase_DEAH_CS
IPR009462--DUF1086
IPR009463--DUF1087
IPR014001--Helicase_ATP-bd
IPR001650--Helicase_C
IPR027417--P-loop_NTPase
IPR000330--SNF2_N
IPR019786--Zinc_finger_PHD-type_CS
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50013--CHROMO_2
PS00690--DEAH_ATP_HELICASE
PS51192--HELICASE_ATP_BIND_1
PS51194--HELICASE_CTER
PS01359--ZF_PHD_1
PS50016--ZF_PHD_2

Pfam

PF08074--CHDCT2
PF08073--CHDNT
PF00385--Chromo
PF06461--DUF1086
PF06465--DUF1087
PF00271--Helicase_C
PF00628--PHD
PF00176--SNF2_N

SMART

SM00298--CHROMO
SM00487--DEXDc
SM01146--DUF1086
SM01147--DUF1087
SM00490--HELICc
SM00249--PHD

Gene Ontology

GO:0005829--C:cytosol
GO:0016020--C:membrane
GO:0016607--C:nuclear speck
GO:0005524--F:ATP binding
GO:0008026--F:ATP-dependent helicase activity
GO:0003677--F:DNA binding
GO:0008270--F:zinc ion binding
GO:0098532--P:histone H3-K27 trimethylation
GO:0060850--P:regulation of transcription involved in cell fate commitment

KEGG

rno:691589

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001701	Ailuropoda melanoleuca	93.92	0.00e+00	2992.00
IUUC-Apl-003406	Anas platyrhynchos	80.41	0.00e+00	2525.00
IUUC-Aca-004671	Anolis carolinensis	83.36	0.00e+00	2699.00
IUUC-Aly-005645	Arabidopsis lyrata	39.21	2.00e-152	534.00
IUUC-Ath-007406	Arabidopsis thaliana	40.11	1.00e-157	551.00
IUUC-Ame-011883	Astyanax mexicanus	76.25	0.00e+00	2547.00
IUUC-Bta-012951	Bos taurus	90.92	0.00e+00	2641.00
IUUC-Bol-016073	Brassica oleracea	41.14	5.00e-157	550.00
IUUC-Bra-016724	Brassica rapa	41.36	6.00e-158	553.00
IUUC-Cja-018871	Callithrix jacchus	88.44	0.00e+00	2813.00
IUUC-Cfa-021063	Canis familiaris	95.76	0.00e+00	2952.00
IUUC-Cpo-022083	Cavia porcellus	93.65	0.00e+00	2885.00
IUUC-Csa-023084	Chlorocebus sabaeus	95.30	0.00e+00	3122.00
IUUC-Csv-025847	Ciona savignyi	53.64	0.00e+00	1409.00
IUUC-Dre-028226	Danio rerio	78.41	0.00e+00	2419.00
IUUC-Dor-030937	Dipodomys ordii	93.26	0.00e+00	1828.00
IUUC-Dme-032150	Drosophila melanogaster	60.69	0.00e+00	1421.00
IUUC-Eca-034372	Equus caballus	93.48	0.00e+00	2964.00
IUUC-Fca-036048	Felis catus	94.75	0.00e+00	2964.00
IUUC-Fal-037282	Ficedula albicollis	87.66	0.00e+00	2788.00
IUUC-Gga-040607	Gallus gallus	88.01	0.00e+00	2372.00
IUUC-Ggo-044514	Gorilla gorilla	94.91	0.00e+00	3115.00
IUUC-Hsa-046181	Homo sapiens	94.93	0.00e+00	3110.00
IUUC-Loc-052795	Lepisosteus oculatus	80.15	0.00e+00	2678.00
IUUC-Laf-053749	Loxodonta africana	95.61	0.00e+00	3063.00
IUUC-Mcc-055856	Macaca mulatta	95.29	0.00e+00	3110.00
IUUC-Meu-056050	Macropus eugenii	75.44	0.00e+00	1166.00
IUUC-Mga-059630	Meleagris gallopavo	88.12	0.00e+00	2818.00
IUUC-Mmr-060986	Microcebus murinus	90.83	0.00e+00	2930.00
IUUC-Mmu-063644	Mus musculus	97.28	0.00e+00	3180.00
IUUC-Mpu-066528	Mustela putorius furo	89.87	0.00e+00	2930.00
IUUC-Nle-069824	Nomascus leucogenys	92.32	0.00e+00	2835.00
IUUC-Ont-072647	Oreochromis niloticus	76.11	0.00e+00	2505.00
IUUC-Ola-086961	Oryzias latipes	74.05	0.00e+00	2432.00
IUUC-Oga-088775	Otolemur garnettii	91.80	0.00e+00	3023.00
IUUC-Oar-090301	Ovis aries	93.58	0.00e+00	2878.00
IUUC-Ptr-090586	Pan troglodytes	93.30	0.00e+00	3046.00
IUUC-Pan-092282	Papio anubis	95.47	0.00e+00	3073.00
IUUC-Psi-093007	Pelodiscus sinensis	84.90	0.00e+00	2326.00
IUUC-Pfo-096802	Poecilia formosa	76.13	0.00e+00	2262.00
IUUC-Pab-097677	Pongo abelii	95.66	0.00e+00	2494.00
IUUC-Pca-100559	Procavia capensis	91.83	0.00e+00	2875.00
IUUC-Sha-107350	Sarcophilus harrisii	84.88	0.00e+00	2756.00
IUUC-Smo-108946	Selaginella moellendorffii	39.72	6.00e-161	562.00
IUUC-Ssc-116303	Sus scrofa	95.96	0.00e+00	2510.00
IUUC-Tgu-116779	Taeniopygia guttata	81.61	0.00e+00	2538.00
IUUC-Tru-117597	Takifugu rubripes	76.71	0.00e+00	2515.00
IUUC-Ttr-128301	Tursiops truncatus	93.38	0.00e+00	3024.00
IUUC-Xtr-132668	Xenopus tropicalis	76.18	0.00e+00	2637.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence