iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
iRefIndex
Protein Expression/Proteomics
GPMDB

Status

Reviewed

Details

Family	Domain	References (PMIDs)
E3 activity/RING/RING	RING	24255109

Classification

Family	E-value	Score	Start	End
E3 activity/RING/RING	7.20e-08	33.7	127	165

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledfkdgplvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           C+iCl++f +++  + CgH+f+++C+++        s +++CP+Cr
   Q: 127  CPICLCPFTQEVS-TKCGHIFCKKCIKNA------LSLQAKCPTCR 165
           ********99565.************888......9*********8 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MASRVVRTSM RLRRRDGVTQ NEHQGDQQVA DQAPTVPQIV ATPPRINVVA IEDDDDVVES 60
TASAFAQAKN KSRSARRGSQ VVDVESAGAN RSTRRRSDQT SVDSVELNKP RKSKAVAPPV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AGGTTTCATC AGAAAGCCTT TGGATTGTAA TAATCCTTTC GTGTCCTTTC GTTTCTCTCA 60
CTCCACTCTG CAATCTACTT CATCGTCGAC ATCTTCTTGC GCATTTCAAA GGTACAAACT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS00518--ZF_RING_1
PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0005634--C:nucleus
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0016567--P:protein ubiquitination

KEGG

ath:AT3G07200

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Apl-004120	Anas platyrhynchos	39.34	1.00e-10	58.90
IUUC-Aly-005728	Arabidopsis lyrata	85.80	2.00e-69	253.00
IUUC-Acl-008349	Aspergillus clavatus	43.75	2.00e-07	50.10
IUUC-Ate-010296	Aspergillus terreus	45.83	8.00e-08	50.80
IUUC-Bci-013998	Botrytis cinerea	38.46	3.00e-07	49.30
IUUC-Bdi-014655	Brachypodium distachyon	37.58	7.00e-18	83.20
IUUC-Bol-016562	Brassica oleracea	66.47	3.00e-46	177.00
IUUC-Bra-016652	Brassica rapa	70.86	5.00e-47	180.00
IUUC-Cfa-020868	Canis familiaris	36.14	2.00e-10	57.80
IUUC-Cin-025749	Ciona intestinalis	40.91	4.00e-10	57.40
IUUC-Cgl-026743	Colletotrichum gloeosporioides	45.10	3.00e-09	55.50
IUUC-Cme-027202	Cyanidioschyzon merolae	42.86	2.00e-07	50.10
IUUC-Dor-030898	Dipodomys ordii	40.00	6.00e-10	56.60
IUUC-Ete-032694	Echinops telfairi	39.34	1.00e-10	58.90
IUUC-Fal-037382	Ficedula albicollis	39.34	2.00e-10	57.80
IUUC-Gac-042194	Gasterosteus aculeatus	39.34	7.00e-11	59.70
IUUC-Hvu-047337	Hordeum vulgare	44.95	3.00e-19	87.80
IUUC-Lpe-050920	Leersia perrieri	53.57	3.00e-16	77.80
IUUC-Loc-051907	Lepisosteus oculatus	44.26	4.00e-11	60.10
IUUC-Lma-053014	Leptosphaeria maculans	41.51	2.00e-06	47.00
IUUC-Meu-056654	Macropus eugenii	41.67	2.00e-10	58.20
IUUC-Mla-058967	Melampsora laricipopulina	43.86	5.00e-09	55.80
IUUC-Mga-059303	Meleagris gallopavo	39.34	1.00e-10	58.90
IUUC-Mdo-062968	Monodelphis domestica	40.98	7.00e-11	59.70
IUUC-Oba-075460	Oryza barthii	32.50	1.00e-17	82.40
IUUC-Ogl-077094	Oryza glaberrima	35.10	3.00e-18	84.30
IUUC-Ogu-078677	Oryza glumaepatula	33.74	6.00e-18	83.60
IUUC-Oin-079992	Oryza indica	35.10	3.00e-18	84.30
IUUC-Olo-080257	Oryza longistaminata	33.12	7.00e-18	83.20
IUUC-Ome-081943	Oryza meridionalis	35.10	4.00e-18	84.70
IUUC-Oni-082671	Oryza nivara	32.50	1.00e-17	82.40
IUUC-Opu-083644	Oryza punctata	47.89	6.00e-17	80.50
IUUC-Oru-085126	Oryza rufipogon	53.85	2.00e-17	83.20
IUUC-Osa-086110	Oryza sativa	35.10	4.00e-18	84.30
IUUC-Ola-086970	Oryzias latipes	37.70	1.00e-10	58.90
IUUC-Pma-094118	Petromyzon marinus	42.03	9.00e-11	57.00
IUUC-Ppa-095374	Physcomitrella patens	44.71	5.00e-16	77.00
IUUC-Pfo-097412	Poecilia formosa	39.34	6.00e-11	59.70
IUUC-Pgr-103385	Puccinia graminis	42.11	7.00e-09	55.50
IUUC-Ptt-103845	Puccinia triticina	42.25	3.00e-09	56.60
IUUC-Sha-107487	Sarcophilus harrisii	41.67	5.00e-11	60.10
IUUC-Sja-107944	Schizosaccharomyces japonicus	42.86	8.00e-08	50.10
IUUC-Ssl-108580	Sclerotinia sclerotiorum	28.06	7.00e-08	51.60
IUUC-Smo-108908	Selaginella moellendorffii	43.86	1.00e-11	62.00
IUUC-Sre-115218	Sporisorium reilianum	48.57	6.00e-05	42.40
IUUC-Tru-117663	Takifugu rubripes	46.15	2.00e-10	57.80
IUUC-Tae-125544	Triticum aestivum	36.30	4.00e-19	87.80
IUUC-Tur-126408	Triticum urartu	50.59	4.00e-19	87.80
IUUC-Uma-129620	Ustilago maydis	38.89	4.00e-07	49.70

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence