iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099756

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Transducin family protein

Genbank Nucleotide ID

CM000346

Gene Name

POPTRDRAFT_1092635; POPTR_0010s23880g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0010s23880	POPTR_0010s23880.1	POPTR_0010s23880.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.00e-08	36.2	279	317

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllks 38
           H +++t++af +d +l+++++  ++ik+WD+r++ +l++
   Q: 279  HPGPITAMAFhPDgHLMATSGKEKKIKIWDVRKFEVLQT 317
           899********998999****************999875 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MGAKQENGDP EDILPPPEQE LSHELDMKVK KYLRGEGADL EVLKDKKLKG QLYDRENLYG 60
KSAKAAAKTE KWLLPSEGGY LEAEGIEKTW RIKQDTIGRE VDISSAKNQY DIVLPDFGPY 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CAGACGGTTG CTACAATTTT CATCAACCTT GCGTCCAGCA AGAAAGTAAT ATTGAACTGC 60
ATGCATAAAG ATATTGCCTT TTTCCTTGTT TTACCAAAAA CCCTAAAAGC ATCTCTCCTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR012952--BING4_C_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08149--BING4CT
PF00400--WD40

SMART

SM01033--BING4CT
SM00320--WD40

Gene Ontology

GO:0030686--C:90S preribosome
GO:0005730--C:nucleolus
GO:0032040--C:small-subunit processome
GO:0000462--P:maturation of SSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

KEGG

pop:POPTR_0010s23880g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000921	Aegilops tauschii	61.75	0.00e+00	633.00
IUUC-Atr-002528	Amborella trichopoda	66.98	2.00e-178	618.00
IUUC-Aly-005663	Arabidopsis lyrata	71.35	0.00e+00	737.00
IUUC-Ath-007405	Arabidopsis thaliana	71.16	0.00e+00	734.00
IUUC-Ang-009764	Aspergillus niger	38.25	6.00e-94	337.00
IUUC-Ame-011572	Astyanax mexicanus	42.14	5.00e-91	328.00
IUUC-Bdi-014459	Brachypodium distachyon	63.21	3.00e-174	603.00
IUUC-Bol-015169	Brassica oleracea	75.62	0.00e+00	715.00
IUUC-Bra-016837	Brassica rapa	75.45	0.00e+00	689.00
IUUC-Cel-018465	Caenorhabditis elegans	42.20	2.00e-87	316.00
IUUC-Cre-022704	Chlamydomonas reinhardtii	47.81	6.00e-132	463.00
IUUC-Cgl-026438	Colletotrichum gloeosporioides	42.38	6.00e-101	360.00
IUUC-Cne-026784	Cryptococcus neoformans	36.23	1.00e-70	260.00
IUUC-Dre-028533	Danio rerio	43.10	5.00e-88	317.00
IUUC-Dse-031280	Dothistroma septosporum	38.12	7.00e-97	347.00
IUUC-Fox-037980	Fusarium oxysporum	37.55	8.00e-92	330.00
IUUC-Fso-038154	Fusarium solani	39.30	4.00e-99	355.00
IUUC-Ggr-039976	Gaeumannomyces graminis	39.11	6.00e-98	350.00
IUUC-Gma-043274	Glycine max	74.49	0.00e+00	769.00
IUUC-Hvu-047436	Hordeum vulgare	65.17	1.00e-125	442.00
IUUC-Kpa-049329	Komagataella pastoris	41.07	9.00e-91	327.00
IUUC-Lpe-051501	Leersia perrieri	62.93	3.00e-167	584.00
IUUC-Loc-051736	Lepisosteus oculatus	41.76	2.00e-90	325.00
IUUC-Mor-057146	Magnaporthe oryzae	37.75	9.00e-94	337.00
IUUC-Mpo-057512	Magnaporthe poae	38.45	1.00e-98	353.00
IUUC-Mtr-058139	Medicago truncatula	67.69	0.00e+00	731.00
IUUC-Mla-059028	Melampsora laricipopulina	41.37	2.00e-82	299.00
IUUC-Mvi-060533	Microbotryum violaceum	39.74	1.00e-85	310.00
IUUC-Mac-065643	Musa acuminata	65.86	0.00e+00	671.00
IUUC-Ont-071977	Oreochromis niloticus	43.32	6.00e-89	321.00
IUUC-Oba-075525	Oryza barthii	62.43	2.00e-175	608.00
IUUC-Obr-076468	Oryza brachyantha	62.81	7.00e-174	603.00
IUUC-Ogl-077395	Oryza glaberrima	62.43	2.00e-175	608.00
IUUC-Ogu-078730	Oryza glumaepatula	62.24	3.00e-175	607.00
IUUC-Oin-079797	Oryza indica	62.43	1.00e-175	608.00
IUUC-Olo-080539	Oryza longistaminata	62.52	2.00e-173	601.00
IUUC-Oni-082635	Oryza nivara	62.24	2.00e-175	608.00
IUUC-Opu-083733	Oryza punctata	62.24	5.00e-178	616.00
IUUC-Oru-084560	Oryza rufipogon	62.43	1.00e-175	608.00
IUUC-Osa-085463	Oryza sativa	62.43	2.00e-175	608.00
IUUC-Olu-087881	Ostreococcus lucimarinus	41.15	2.00e-106	379.00
IUUC-Pma-094742	Petromyzon marinus	41.73	8.00e-84	303.00
IUUC-Ppa-095230	Physcomitrella patens	48.89	2.00e-134	471.00
IUUC-Ppe-101354	Prunus persica	77.69	0.00e+00	743.00
IUUC-Pte-104146	Pyrenophora teres	39.61	3.00e-89	322.00
IUUC-Pyt-104559	Pyrenophora triticirepentis	36.83	1.00e-88	320.00
IUUC-Sce-106227	Saccharomyces cerevisiae	38.48	7.00e-94	337.00
IUUC-Sja-107925	Schizosaccharomyces japonicus	37.81	2.00e-96	346.00
IUUC-Spo-108359	Schizosaccharomyces pombe	40.66	4.00e-94	338.00
IUUC-Smo-108706	Selaginella moellendorffii	53.04	6.00e-130	457.00
IUUC-Sit-110158	Setaria italica	63.64	5.00e-169	587.00
IUUC-Sly-111569	Solanum lycopersicum	74.48	0.00e+00	729.00
IUUC-Stu-112403	Solanum tuberosum	76.02	0.00e+00	744.00
IUUC-Sbi-114817	Sorghum bicolor	63.57	4.00e-159	554.00
IUUC-Sre-115150	Sporisorium reilianum	42.29	5.00e-93	335.00
IUUC-Tru-118535	Takifugu rubripes	41.57	2.00e-93	335.00
IUUC-Tca-121165	Theobroma cacao	77.84	0.00e+00	807.00
IUUC-Tre-122114	Trichoderma reesei	38.88	2.00e-101	362.00
IUUC-Tvi-122437	Trichoderma virens	39.69	1.00e-100	359.00
IUUC-Tae-125874	Triticum aestivum	61.75	0.00e+00	632.00
IUUC-Tur-126307	Triticum urartu	58.59	5.00e-177	613.00
IUUC-Tme-127208	Tuber melanosporum	42.95	2.00e-106	379.00
IUUC-Ttr-129047	Tursiops truncatus	41.47	7.00e-89	320.00
IUUC-Uma-129320	Ustilago maydis	42.89	2.00e-91	329.00
IUUC-Vda-129926	Verticillium dahliae	38.46	4.00e-96	345.00
IUUC-Vvi-131643	Vitis vinifera	78.58	0.00e+00	808.00
IUUC-Yli-134674	Yarrowia lipolytica	42.57	4.00e-94	338.00
IUUC-Zma-135903	Zea mays	63.08	9.00e-155	539.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence