iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
microRNA	TRANSFAC	RAID2
Protein-protein Interaction
IID
Post-translational Modifications (PTMs)
CPLM
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/SCF/F-box	3.40e-43	147.6	10	153

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/SCF/F-box

   S: 1    rrraraaprp....rsaedwwwdrlaprgsgyhllqsdsmllvlsepgparpraqrrasrrtprqpprgpsaaakpkaglrseaaaapa 85
           rrr r + rp    rsaedwwwdrlaprgsgyhllq+dsmllvl +  p+r ra rra rr+pr   rgp+a akp+a           
   Q: 10   RRRVRGSKRPdargRSAEDWWWDRLAPRGSGYHLLQADSMLLVLPDLEPTRARAHRRAPRRAPRSLARGPTAVAKPRAK---------- 88
           677777666555559*************************************************************984.......... PP
   S: 86   papaptptpeegpdaglldrlpeeilveilkll...dkee..llraarvcrrwqelasqkalwktvt 147
             p p p+ ++g d+g++dr+p+e+lv+i++ll   ++++  l+raarvcr+w+e++s+++lw+tvt
   Q: 89   --PRPEPSLDQGLDSGWGDRIPLEVLVHIFGLLvaaHGPMpfLGRAARVCRHWHEATSHPSLWHTVT 153
           ..6788999************************999555566***********************98 PP

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MAPVAPGRVR RRVRGSKRPD ARGRSAEDWW WDRLAPRGSG YHLLQADSML LVLPDLEPTR 60
ARAHRRAPRR APRSLARGPT AVAKPRAKPR PEPSLDQGLD SGWGDRIPLE VLVHIFGLLV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CCGCCCAGCA CCAAGAGAAT GCCGCTTTGC CCGGAAGGTA GCCAAACCCC AGCCCAAGCA 60
CCGTATTAAG ACGCCGGCTA ATGCTCCTGA CTCTCGGCGG AAGTCCCACC CCCGGAAGCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR001810--F-box_dom
IPR032675--L_dom-like
IPR006553--Leu-rich_rpt_Cys-con_subtyp

Pfam

PF12937--F-box-like

SMART

SM00367--LRR_CC

KEGG

rno:362941

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-002047	Ailuropoda melanoleuca	77.76	0.00e+00	709.00
IUUC-Aca-004785	Anolis carolinensis	46.30	4.00e-51	194.00
IUUC-Ani-009209	Aspergillus nidulans	28.89	6.00e-04	39.30
IUUC-Ame-011690	Astyanax mexicanus	39.29	7.00e-38	150.00
IUUC-Bta-012781	Bos taurus	79.09	0.00e+00	748.00
IUUC-Cja-018799	Callithrix jacchus	70.00	3.00e-108	385.00
IUUC-Cfa-020518	Canis familiaris	82.98	0.00e+00	640.00
IUUC-Cpo-022012	Cavia porcellus	77.15	0.00e+00	756.00
IUUC-Csa-023717	Chlorocebus sabaeus	85.13	1.00e-179	622.00
IUUC-Dre-028685	Danio rerio	42.55	5.00e-93	335.00
IUUC-Dno-029881	Dasypus novemcinctus	81.18	3.00e-110	390.00
IUUC-Dme-032069	Drosophila melanogaster	32.87	2.00e-46	181.00
IUUC-Eca-034384	Equus caballus	82.98	0.00e+00	671.00
IUUC-Eeu-034885	Erinaceus europaeus	71.57	6.00e-180	623.00
IUUC-Fca-036109	Felis catus	78.26	0.00e+00	708.00
IUUC-Gmo-039122	Gadus morhua	36.40	4.00e-68	252.00
IUUC-Gac-042048	Gasterosteus aculeatus	39.04	9.00e-95	340.00
IUUC-Ggo-045521	Gorilla gorilla	79.58	0.00e+00	728.00
IUUC-Hsa-046499	Homo sapiens	79.88	0.00e+00	776.00
IUUC-Itr-048984	Ictidomys tridecemlineatus	78.86	0.00e+00	736.00
IUUC-Loc-052284	Lepisosteus oculatus	45.39	3.00e-94	338.00
IUUC-Laf-053367	Loxodonta africana	82.63	6.00e-174	603.00
IUUC-Mcc-055865	Macaca mulatta	80.72	0.00e+00	733.00
IUUC-Meu-056048	Macropus eugenii	56.96	5.00e-111	394.00
IUUC-Mmr-061506	Microcebus murinus	76.17	0.00e+00	699.00
IUUC-Mdo-062323	Monodelphis domestica	55.64	7.00e-139	487.00
IUUC-Mmu-063382	Mus musculus	93.57	0.00e+00	904.00
IUUC-Mpu-066188	Mustela putorius furo	82.61	0.00e+00	638.00
IUUC-Nle-069437	Nomascus leucogenys	79.00	0.00e+00	683.00
IUUC-Ont-072058	Oreochromis niloticus	42.96	1.00e-80	293.00
IUUC-Oan-072773	Ornithorhynchus anatinus	46.77	1.00e-107	383.00
IUUC-Oba-075397	Oryza barthii	30.92	1.00e-05	45.40
IUUC-Ogl-077479	Oryza glaberrima	26.40	4.00e-08	52.40
IUUC-Ogu-078215	Oryza glumaepatula	24.80	6.00e-07	48.10
IUUC-Oin-079411	Oryza indica	27.20	1.00e-08	54.30
IUUC-Ome-081759	Oryza meridionalis	27.60	1.00e-07	52.80
IUUC-Oru-084766	Oryza rufipogon	27.20	1.00e-07	52.40
IUUC-Osa-085658	Oryza sativa	27.20	1.00e-08	54.30
IUUC-Ola-086656	Oryzias latipes	39.63	2.00e-62	232.00
IUUC-Oga-088299	Otolemur garnettii	76.98	0.00e+00	694.00
IUUC-Oar-089657	Ovis aries	77.89	0.00e+00	728.00
IUUC-Ptr-090950	Pan troglodytes	79.69	0.00e+00	722.00
IUUC-Pan-092741	Papio anubis	80.91	0.00e+00	735.00
IUUC-Psi-093324	Pelodiscus sinensis	50.84	4.00e-75	274.00
IUUC-Pma-094256	Petromyzon marinus	38.10	4.00e-47	182.00
IUUC-Pfo-096992	Poecilia formosa	39.95	3.00e-83	302.00
IUUC-Pca-100265	Procavia capensis	68.20	9.00e-97	346.00
IUUC-Pva-103253	Pteropus vampyrus	80.14	2.00e-170	592.00
IUUC-Sha-106485	Sarcophilus harrisii	56.86	6.00e-137	481.00
IUUC-Ssc-115464	Sus scrofa	75.78	0.00e+00	694.00
IUUC-Tsy-119633	Tarsius syrichta	64.83	4.00e-138	484.00
IUUC-Tni-120580	Tetraodon nigroviridis	46.22	2.00e-23	101.00
IUUC-Ttr-128827	Tursiops truncatus	81.78	0.00e+00	685.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence