iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Vvi-131074

Ensembl Protein ID

VIT_03s0038g00160.t01

UniProt Accession

D7U5K6; D7U5K6_VITVI

Genbank Protein ID

CBI38025.3

Protein Name

Putative uncharacterized protein

Genbank Nucleotide ID

FN596508

Gene Name

SHL1; VIT_03s0038g00160

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
VIT_03s0038g00160	VIT_03s0038g00160.t01	VIT_03s0038g00160.t01

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/PHD	9.50e-09	35.9	140	188

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/PHD

   S: 3    vClvCgeggedekslveCekCrewfHpaClklsveeelpnsekwiCpkCrs 53
           +C  C+ +++ ++ +v+Ce C++wfHpaC  ++  ee ++ e+++C++C+s
   Q: 140  YC-KCEMPYNPDDLMVQCEGCTDWFHPACIDMT-PEEAKRLEHFFCQNCSS 188
           78.7*****************************.555555556******87 PP

Organism

Vitis vinifera

Protein Sequence
(Fasta)

MAKARAPRRT LDSYTIKSIN KTIRAGDCVL MRPSDSSKPS YVAKVEKIES DGRGSVKVHV 60
RWYYRPEESI GGRRQFHGSK EVFLSDHYDV QSADTIEGKC TVHTFKSYTK LDAVGNDDFF 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CGAGCGTGTG CATGTGTGTT TGTATTGTTC AACAGTTCAT GGCCAAAGCC CGGGCTCCCA 60
GACGAACCCT AGACTCTTAC ACAATCAAAT CTATCAATAA AACAATTCGA GGTGAGCCAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001025--BAH_dom
IPR019786--Zinc_finger_PHD-type_CS
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51038--BAH
PS01359--ZF_PHD_1
PS50016--ZF_PHD_2

Pfam

PF01426--BAH
PF00628--PHD

SMART

SM00439--BAH
SM00249--PHD

Gene Ontology

GO:0000785--C:chromatin
GO:0005677--C:chromatin silencing complex
GO:0003682--F:chromatin binding
GO:0000976--F:transcription regulatory region sequence-specific DNA binding
GO:0008270--F:zinc ion binding
GO:0006342--P:chromatin silencing
GO:0031507--P:heterochromatin assembly

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-005443	Arabidopsis lyrata	71.83	6.00e-92	328.00
IUUC-Ago-007912	Ashbya gossypii	47.22	9.00e-03	34.30
IUUC-Ani-009326	Aspergillus nidulans	40.00	5.00e-07	49.30
IUUC-Cre-022934	Chlamydomonas reinhardtii	45.29	1.00e-44	171.00
IUUC-Gma-042998	Glycine max	87.96	7.00e-116	408.00
IUUC-Hvu-047723	Hordeum vulgare	66.51	5.00e-81	292.00
IUUC-Lpe-051138	Leersia perrieri	70.81	7.00e-90	322.00
IUUC-Loc-051927	Lepisosteus oculatus	33.77	6.00e-11	62.40
IUUC-Mtr-058621	Medicago truncatula	81.65	7.00e-108	382.00
IUUC-Oba-075855	Oryza barthii	70.14	4.00e-90	323.00
IUUC-Oin-079179	Oryza indica	70.18	3.00e-92	330.00
IUUC-Ome-081714	Oryza meridionalis	69.95	3.00e-91	326.00
IUUC-Oni-082099	Oryza nivara	69.95	3.00e-91	326.00
IUUC-Osa-085620	Oryza sativa	70.18	3.00e-92	330.00
IUUC-Pma-094621	Petromyzon marinus	39.58	3.00e-09	55.50
IUUC-Pop-098853	Populus trichocarpa	86.11	1.00e-112	397.00
IUUC-Ppe-101818	Prunus persica	87.96	1.00e-114	404.00
IUUC-Sit-110445	Setaria italica	70.64	3.00e-92	330.00
IUUC-Sly-110932	Solanum lycopersicum	87.50	1.00e-115	407.00
IUUC-Stu-112357	Solanum tuberosum	86.11	6.00e-112	395.00
IUUC-Sbi-113989	Sorghum bicolor	72.02	7.00e-94	335.00
IUUC-Tni-119736	Tetraodon nigroviridis	38.00	2.00e-09	57.40
IUUC-Tca-121689	Theobroma cacao	88.04	2.00e-112	397.00
IUUC-Tae-123050	Triticum aestivum	69.27	1.00e-90	325.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence