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Basic Information Integrated Annotations
Tag Content
UUCD2 ID IUUC-Mmu-063920
UUCD1 version UUC-MuM-00118
Ensembl Protein ID ENSMUSP00000104301.1
UniProt Accession B1AR17; B1AR17_MOUSE
Genbank Protein ID ENSMUSP00000104301
Protein Name Chromodomain helicase DNA-binding protein 3
Genbank Nucleotide ID AL596125
Gene Name Chd3
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSMUSG00000018474.17 ENSMUST00000108661.7 ENSMUSP00000104301.1
ENSMUSG00000018474.17 ENSMUST00000128981.7 ENSMUSP00000122137.1
ENSMUSG00000018474.17 ENSMUST00000151436.1 ENSMUSP00000118172.1
ENSMUSG00000018474.17 ENSMUST00000154046.7 ENSMUSP00000121192.1
ENSMUSG00000018474.17 ENSMUST00000144701.1 ENSMUSP00000114520.1
ENSMUSG00000018474.17 ENSMUST00000092971.12 ENSMUSP00000090649.6
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEOArrayExpressGXD
DNA & RNA Element
AREsitemiRTarBasemicroRNATRANSFAC
RepTarRAID2
Protein-protein Interaction
IIDiRefIndexHINT
Post-translational Modifications (PTMs)
CPLMdbPAFPhosphositePlusPHOSIDA
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 activity/RING/PHD 1.30e-15 58.4 433 478
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 activity/RING/PHD
   S: 2    kvClvCgeggedekslveCekCrewfHpaClklsveeelpnsekwiCpkCrs 53
           ++C vC++gge    ++ C+ C +++H  Cl ++  +  p+ + w Cp C++
   Q: 433  DYCEVCQQGGE----IILCDTCPRAYHLVCLDPE-LDRAPEGK-WSCPHCEK 478
           79*********....9******************.*******7.******86 PP
   
Organism Mus musculus
Protein Sequence
(Fasta)
MASPLRDEEE EEEEMVVSEE EEEEEEEGDE EEEEVEAADE DDEEEDEEGV LGRGPGHDRS 60
RDRHSPPSCH LFPPPPPPLP PPPPPDKDDI RLLPSALGVK KRKRGPKKQK ENKPGKPRKR 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Mmu-063920|E3,PHD|Mus musculus
Please wait for a moment...
Nucleotide Sequence
(Fasta)
GGCCAGAGCC ACAGGATGGC TTCCCCTCTG AGGGACGAGG AGGAGGAGGA GGAGGAGATG 60
GTGGTGTCGG AGGAGGAAGA AGAGGAGGAA GAAGAGGGCG ACGAGGAGGA GGAGGAGGTG 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Mmu-063920|E3,PHD|Mus musculus
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1267--Proteomics identification
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger
Interpro

IPR028722--CHD3
IPR012957--CHD_C2
IPR012958--CHD_N
IPR000953--Chromo/chromo_shadow_dom
IPR023780--Chromo_domain
IPR016197--Chromodomain-like
IPR002464--DNA/RNA_helicase_DEAH_CS
IPR009462--DUF1086
IPR009463--DUF1087
IPR014001--Helicase_ATP-bd
IPR001650--Helicase_C
IPR009071--HMG_box_dom
IPR027417--P-loop_NTPase
IPR000330--SNF2_N
IPR019786--Zinc_finger_PHD-type_CS
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD
PROSITE

PS50013--CHROMO_2
PS00690--DEAH_ATP_HELICASE
PS51192--HELICASE_ATP_BIND_1
PS51194--HELICASE_CTER
PS01359--ZF_PHD_1
PS50016--ZF_PHD_2
Pfam

PF08074--CHDCT2
PF08073--CHDNT
PF00385--Chromo
PF06461--DUF1086
PF06465--DUF1087
PF00271--Helicase_C
PF00628--PHD
PF00176--SNF2_N
SMART

SM00298--CHROMO
SM00487--DEXDc
SM01146--DUF1086
SM01147--DUF1087
SM00490--HELICc
SM00249--PHD
Gene Ontology

GO:0005813--C:centrosome
GO:0005737--C:cytoplasm
GO:0005815--C:microtubule organizing center
GO:0005730--C:nucleolus
GO:0005654--C:nucleoplasm
GO:0005634--C:nucleus
GO:0016581--C:NuRD complex
GO:0005524--F:ATP binding
GO:0008026--F:ATP-dependent helicase activity
GO:0003677--F:DNA binding
GO:0003723--F:RNA binding
GO:0008270--F:zinc ion binding
GO:0051297--P:centrosome organization
GO:0006333--P:chromatin assembly or disassembly
GO:0006355--P:regulation of transcription, DNA-templated
GO:0007051--P:spindle organization
KEGG mmu:216848
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aca-004560 Anolis carolinensis 81.64 0.00e+00 2712.00
IUUC-Ame-011352 Astyanax mexicanus 79.71 0.00e+00 2069.00
IUUC-Bta-012868 Bos taurus 96.25 0.00e+00 3184.00
IUUC-Cja-019018 Callithrix jacchus 89.24 0.00e+00 3027.00
IUUC-Cfa-021055 Canis familiaris 96.74 0.00e+00 3156.00
IUUC-Cpo-021523 Cavia porcellus 96.40 0.00e+00 3228.00
IUUC-Csa-024136 Chlorocebus sabaeus 96.45 0.00e+00 3118.00
IUUC-Dor-030167 Dipodomys ordii 94.48 0.00e+00 2577.00
IUUC-Ete-032757 Echinops telfairi 90.09 0.00e+00 2839.00
IUUC-Eeu-034777 Erinaceus europaeus 86.52 0.00e+00 2590.00
IUUC-Fca-036043 Felis catus 95.43 0.00e+00 3172.00
IUUC-Gmo-038957 Gadus morhua 79.70 0.00e+00 1456.00
IUUC-Gac-041375 Gasterosteus aculeatus 69.20 0.00e+00 2536.00
IUUC-Gma-043999 Glycine max 43.36 0.00e+00 738.00
IUUC-Ggo-045538 Gorilla gorilla 96.30 0.00e+00 3110.00
IUUC-Hsa-045916 Homo sapiens 96.00 0.00e+00 3111.00
IUUC-Itr-048463 Ictidomys tridecemlineatus 96.73 0.00e+00 3081.00
IUUC-Lch-050343 Latimeria chalumnae 79.51 0.00e+00 2090.00
IUUC-Loc-052383 Lepisosteus oculatus 79.69 0.00e+00 2063.00
IUUC-Laf-053870 Loxodonta africana 96.41 0.00e+00 2842.00
IUUC-Mcc-055499 Macaca mulatta 89.93 0.00e+00 2991.00
IUUC-Meu-056292 Macropus eugenii 87.96 0.00e+00 1224.00
IUUC-Mmr-061223 Microcebus murinus 95.09 0.00e+00 3137.00
IUUC-Mdo-062971 Monodelphis domestica 90.96 0.00e+00 2817.00
IUUC-Mpu-065809 Mustela putorius furo 96.04 0.00e+00 2908.00
IUUC-Mlu-067355 Myotis lucifugus 94.96 0.00e+00 3172.00
IUUC-Nle-069842 Nomascus leucogenys 95.49 0.00e+00 2990.00
IUUC-Opr-070960 Ochotona princeps 94.24 0.00e+00 3029.00
IUUC-Oan-072885 Ornithorhynchus anatinus 60.70 0.00e+00 1940.00
IUUC-Ocu-074438 Oryctolagus cuniculus 90.94 0.00e+00 2976.00
IUUC-Oga-088374 Otolemur garnettii 95.69 0.00e+00 3141.00
IUUC-Oar-089784 Ovis aries 93.72 0.00e+00 3127.00
IUUC-Ptr-090799 Pan troglodytes 96.05 0.00e+00 3123.00
IUUC-Pab-098174 Pongo abelii 93.22 0.00e+00 2963.00
IUUC-Pca-100829 Procavia capensis 95.45 0.00e+00 2351.00
IUUC-Rno-104884 Rattus norvegicus 98.53 0.00e+00 3041.00
IUUC-Sha-107233 Sarcophilus harrisii 91.49 0.00e+00 3000.00
IUUC-Sly-110976 Solanum lycopersicum 43.86 0.00e+00 739.00
IUUC-Ssc-115751 Sus scrofa 96.55 0.00e+00 3141.00
IUUC-Tru-118648 Takifugu rubripes 78.67 0.00e+00 2002.00
IUUC-Tni-120039 Tetraodon nigroviridis 74.92 0.00e+00 2080.00
IUUC-Tbe-128117 Tupaia belangeri 90.12 0.00e+00 1293.00
IUUC-Vpa-130209 Vicugna pacos 84.47 0.00e+00 634.00
IUUC-Vvi-130849 Vitis vinifera 43.58 0.00e+00 736.00
IUUC-Xtr-132833 Xenopus tropicalis 72.69 0.00e+00 2428.00
Created Date 25-Jun-2017

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