iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Tca-121594

Ensembl Protein ID

EOY27440

UniProt Accession

A0A061GC26; A0A061GC26_THECC

Genbank Protein ID

EOY27440.1

Protein Name

Rad23 UV excision repair protein family isoform 1

Genbank Nucleotide ID

CM001884

Gene Name

TCM_029286

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
TCM_029286	EOY27441	EOY27441
TCM_029286	EOY27440	EOY27440

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
UBD/Alpha-Helix/UBA	1.20e-24	86.5	149	190
ULD/UDP/UBQ/UBQ_PIM	2.70e-24	85.8	1	79

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

UBD/Alpha-Helix/UBA

   S: 3    dedkleqlveMG...FdreealqaLraannnleaAveyLldg 41
           +e+ ++ql++MG   +d+e++ +aLraa+nn+e+Av+yL++g
   Q: 149  LEQTIQQLMDMGggnWDKETVTRALRAAYNNPERAVDYLYSG 190
           589************************************986 PP

ULD/UDP/UBQ/UBQ_PIM

   S: 1    mkltvktlkgkefelevseddtveelKekiakesg...vppeqqkLIyaGkiLkDdttLselgikdgsvvhlvvkksks 76
           mkltvktlkg++fe++v+++dtv ++K++i++ +g   +p+ qq LI++Gk+LkD+ttL +++++++ +++++++ksks
   Q: 1    MKLTVKTLKGSHFEIRVQPNDTVMAVKKNIEDAQGkdnYPCGQQLLIHNGKVLKDETTLADNKVSEDGFLVVMLSKSKS 79
           99**************************************************************************986 PP

Organism

Theobroma cacao

Protein Sequence
(Fasta)

MKLTVKTLKG SHFEIRVQPN DTVMAVKKNI EDAQGKDNYP CGQQLLIHNG KVLKDETTLA 60
DNKVSEDGFL VVMLSKSKSL GSAGTSSAQP ASSTPSVTPP ASNPAPAPEA PAQAPTSKGT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TCTGTGTGTT TATTTAGAGT GCACTCTCTC TCTTTCCTTT TCCCTCCGTC GCTCCTCCTC 60
TCCTCTGCCG TCGCCGGTAT CGGTGTTGCG CTCTCTGCCT CCTCCCTTCT TTCCTCTGTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR004806--Rad23
IPR006636--STI1_HS-bd
IPR015940--UBA
IPR009060--UBA-like
IPR029071--Ubiquitin-rel_dom
IPR000626--Ubiquitin_dom
IPR015360--XPC-bd

PROSITE

PS50030--UBA
PS50053--UBIQUITIN_2

Pfam

PF00627--UBA
PF00240--ubiquitin
PF09280--XPC-binding

PRINTS

PR01839--RAD23PROTEIN

SMART

SM00727--STI1
SM00165--UBA
SM00213--UBQ

Gene Ontology

GO:0005634--C:nucleus
GO:0003684--F:damaged DNA binding
GO:0006289--P:nucleotide-excision repair
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000088	Aegilops tauschii	55.92	1.00e-94	339.00
IUUC-Aml-001515	Ailuropoda melanoleuca	39.09	6.00e-34	137.00
IUUC-Atr-002756	Amborella trichopoda	70.74	2.00e-133	468.00
IUUC-Aca-004704	Anolis carolinensis	35.29	4.00e-40	157.00
IUUC-Aly-006159	Arabidopsis lyrata	72.15	2.00e-140	491.00
IUUC-Ath-007157	Arabidopsis thaliana	68.78	2.00e-129	454.00
IUUC-Ago-007830	Ashbya gossypii	29.23	3.00e-14	72.00
IUUC-Acl-008212	Aspergillus clavatus	37.60	2.00e-28	119.00
IUUC-Afl-008605	Aspergillus flavus	32.84	1.00e-34	139.00
IUUC-Afu-008877	Aspergillus fumigatus	37.05	6.00e-29	120.00
IUUC-Ani-009460	Aspergillus nidulans	36.91	6.00e-38	150.00
IUUC-Aor-010032	Aspergillus oryzae	32.76	1.00e-35	143.00
IUUC-Ate-010458	Aspergillus terreus	37.79	3.00e-42	164.00
IUUC-Ame-011107	Astyanax mexicanus	47.83	2.00e-17	83.20
IUUC-Bta-012377	Bos taurus	39.51	2.00e-32	132.00
IUUC-Bdi-014355	Brachypodium distachyon	61.50	2.00e-116	410.00
IUUC-Bol-016300	Brassica oleracea	67.37	7.00e-130	456.00
IUUC-Bra-016970	Brassica rapa	70.11	2.00e-133	468.00
IUUC-Cel-018364	Caenorhabditis elegans	25.88	3.00e-17	81.60
IUUC-Cja-018946	Callithrix jacchus	32.82	3.00e-39	155.00
IUUC-Cfa-020577	Canis familiaris	41.15	1.00e-33	136.00
IUUC-Cpo-021850	Cavia porcellus	36.62	4.00e-51	194.00
IUUC-Cre-022810	Chlamydomonas reinhardtii	34.21	2.00e-26	112.00
IUUC-Csa-023183	Chlorocebus sabaeus	33.25	2.00e-48	185.00
IUUC-Cho-024814	Choloepus hoffmanni	41.82	2.00e-19	89.40
IUUC-Cin-025741	Ciona intestinalis	29.44	1.00e-23	102.00
IUUC-Csv-025823	Ciona savignyi	28.67	4.00e-25	107.00
IUUC-Cme-027260	Cyanidioschyzon merolae	28.40	5.00e-29	120.00
IUUC-Dre-028369	Danio rerio	35.38	1.00e-49	189.00
IUUC-Dno-030017	Dasypus novemcinctus	32.56	3.00e-39	154.00
IUUC-Dor-030358	Dipodomys ordii	38.68	2.00e-33	135.00
IUUC-Dme-032027	Drosophila melanogaster	28.54	8.00e-41	160.00
IUUC-Ete-032583	Echinops telfairi	41.82	4.00e-19	88.20
IUUC-Eca-033599	Equus caballus	31.27	8.00e-38	150.00
IUUC-Fca-036051	Felis catus	34.33	1.00e-44	172.00
IUUC-Fal-037148	Ficedula albicollis	37.79	1.00e-31	129.00
IUUC-Fox-037960	Fusarium oxysporum	33.50	8.00e-36	143.00
IUUC-Fso-038107	Fusarium solani	48.44	6.00e-20	90.90
IUUC-Gmo-038528	Gadus morhua	37.19	1.00e-49	189.00
IUUC-Gac-042298	Gasterosteus aculeatus	35.23	2.00e-44	172.00
IUUC-Gma-044077	Glycine max	76.88	6.00e-147	512.00
IUUC-Ggo-045125	Gorilla gorilla	37.12	1.00e-30	126.00
IUUC-Hsa-046519	Homo sapiens	37.12	1.00e-30	126.00
IUUC-Hvu-047738	Hordeum vulgare	61.43	8.00e-81	292.00
IUUC-Itr-047875	Ictidomys tridecemlineatus	36.71	1.00e-50	192.00
IUUC-Kpa-049314	Komagataella pastoris	26.81	4.00e-30	124.00
IUUC-Lpe-051168	Leersia perrieri	62.20	6.00e-121	426.00
IUUC-Lma-053328	Leptosphaeria maculans	38.16	2.00e-09	52.80
IUUC-Laf-054589	Loxodonta africana	34.69	7.00e-46	177.00
IUUC-Mcc-055860	Macaca mulatta	33.25	2.00e-48	185.00
IUUC-Meu-056459	Macropus eugenii	40.16	2.00e-35	142.00
IUUC-Mtr-058239	Medicago truncatula	76.41	1.00e-141	494.00
IUUC-Mga-060060	Meleagris gallopavo	27.89	2.60e-01	28.90
IUUC-Mvi-060220	Microbotryum violaceum	47.62	2.00e-23	102.00
IUUC-Mmr-060819	Microcebus murinus	34.33	5.00e-50	190.00
IUUC-Mdo-062742	Monodelphis domestica	36.24	9.00e-53	199.00
IUUC-Mmu-063929	Mus musculus	35.04	8.00e-51	193.00
IUUC-Mac-064468	Musa acuminata	68.89	4.00e-136	476.00
IUUC-Mpu-066684	Mustela putorius furo	39.51	4.00e-34	137.00
IUUC-Mlu-067787	Myotis lucifugus	34.61	5.00e-47	181.00
IUUC-Nfi-068390	Neosartorya fischeri	33.24	5.00e-32	130.00
IUUC-Nle-069655	Nomascus leucogenys	37.12	1.00e-30	126.00
IUUC-Ont-072484	Oreochromis niloticus	39.77	1.00e-35	142.00
IUUC-Oan-073572	Ornithorhynchus anatinus	36.57	2.00e-45	175.00
IUUC-Ocu-074831	Oryctolagus cuniculus	37.70	1.00e-29	122.00
IUUC-Oba-074972	Oryza barthii	61.93	3.00e-118	417.00
IUUC-Obr-076909	Oryza brachyantha	67.12	1.00e-125	441.00
IUUC-Ogl-077067	Oryza glaberrima	65.05	2.00e-123	434.00
IUUC-Ogu-078023	Oryza glumaepatula	63.39	2.00e-105	374.00
IUUC-Oin-079203	Oryza indica	64.96	5.00e-124	436.00
IUUC-Olo-080559	Oryza longistaminata	63.90	5.00e-123	433.00
IUUC-Oni-082812	Oryza nivara	61.66	7.00e-118	416.00
IUUC-Opu-083963	Oryza punctata	62.26	6.00e-116	409.00
IUUC-Oru-084942	Oryza rufipogon	59.49	3.00e-105	374.00
IUUC-Osa-085951	Oryza sativa	65.23	5.00e-124	436.00
IUUC-Olu-087843	Ostreococcus lucimarinus	36.53	5.00e-47	180.00
IUUC-Oga-089075	Otolemur garnettii	32.06	8.00e-42	163.00
IUUC-Oar-090387	Ovis aries	38.68	2.00e-32	132.00
IUUC-Ptr-091165	Pan troglodytes	37.12	2.00e-30	125.00
IUUC-Pan-092140	Papio anubis	33.25	2.00e-48	185.00
IUUC-Psi-093477	Pelodiscus sinensis	44.44	7.00e-16	77.40
IUUC-Ppa-095654	Physcomitrella patens	59.42	3.00e-110	390.00
IUUC-Pfo-096607	Poecilia formosa	35.95	7.00e-45	173.00
IUUC-Pab-097738	Pongo abelii	32.26	8.00e-39	153.00
IUUC-Pop-100054	Populus trichocarpa	76.39	4.00e-149	519.00
IUUC-Pca-100348	Procavia capensis	33.33	1.00e-44	172.00
IUUC-Ppe-101522	Prunus persica	85.90	7.00e-168	582.00
IUUC-Pva-102412	Pteropus vampyrus	39.51	8.00e-35	140.00
IUUC-Pgr-103618	Puccinia graminis	31.20	2.00e-29	122.00
IUUC-Pte-104303	Pyrenophora teres	49.23	6.00e-22	97.40
IUUC-Pyt-104580	Pyrenophora triticirepentis	49.23	8.00e-22	97.10
IUUC-Rno-105569	Rattus norvegicus	40.33	6.00e-35	140.00
IUUC-Sha-106918	Sarcophilus harrisii	34.84	1.00e-40	159.00
IUUC-Sja-107851	Schizosaccharomyces japonicus	33.86	7.00e-41	160.00
IUUC-Smo-109518	Selaginella moellendorffii	56.36	4.00e-96	343.00
IUUC-Sit-109813	Setaria italica	61.99	3.00e-117	414.00
IUUC-Sly-111349	Solanum lycopersicum	73.99	1.00e-145	508.00
IUUC-Stu-112306	Solanum tuberosum	74.06	7.00e-136	476.00
IUUC-Sar-112925	Sorex araneus	37.97	7.00e-26	110.00
IUUC-Sbi-114459	Sorghum bicolor	65.50	5.00e-125	439.00
IUUC-Ssc-115460	Sus scrofa	39.09	2.00e-33	135.00
IUUC-Tgu-116918	Taeniopygia guttata	37.79	1.00e-31	129.00
IUUC-Tru-118651	Takifugu rubripes	31.78	4.00e-42	164.00
IUUC-Tsy-118836	Tarsius syrichta	41.82	7.00e-19	87.40
IUUC-Tni-120493	Tetraodon nigroviridis	35.89	6.00e-50	190.00
IUUC-Tre-121911	Trichoderma reesei	33.16	6.00e-28	117.00
IUUC-Tvi-122617	Trichoderma virens	36.62	9.00e-38	149.00
IUUC-Tae-123231	Triticum aestivum	65.78	3.00e-120	424.00
IUUC-Tur-126144	Triticum urartu	54.42	1.00e-103	369.00
IUUC-Tbe-127493	Tupaia belangeri	41.82	3.00e-19	88.60
IUUC-Ttr-128464	Tursiops truncatus	38.40	1.00e-30	126.00
IUUC-Vpa-130357	Vicugna pacos	35.05	5.00e-15	74.30
IUUC-Vvi-130855	Vitis vinifera	80.15	4.00e-102	363.00
IUUC-Xtr-132679	Xenopus tropicalis	35.29	6.00e-22	97.80
IUUC-Xma-133503	Xiphophorus maculatus	32.44	8.00e-47	180.00
IUUC-Yli-134615	Yarrowia lipolytica	33.85	2.00e-38	152.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence