iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ggr-040031

Ensembl Protein ID

GGTG_09434T0

UniProt Accession

J3P7E2; J3P7E2_GAGT3

Genbank Protein ID

EJT72573.1

Protein Name

Polyadenylation factor subunit 2

Genbank Nucleotide ID

ADBI01000766

Gene Name

GGTG_09434

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
GGTG_09434	GGTG_09434T0	GGTG_09434T0

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	5.50e-24	82.8	255	285
UBD/Beta-Prp	1.20e-45	155.5	125	354

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 8    claf.sd.tllvsGsdDgtikvWDlrtgvll 36
           ++++ ++ +l+vsGs D+ +k+WD+r+ ++l
   Q: 255  ACDWhPTkGLIVSGSKDHLVKLWDPRSSRCL 285
           45679888*******************9997 PP

UBD/Beta-Prp

   S: 10   ksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsg 106
           k++i++vk++p+++ l+t+s+ g  ++w+ t  ++   ++ hea+++a+ +s+++++l++g  D++i+ w + ++  v t++  +d+v++++f p++
   Q: 125  KHPINVVKWTPEGRRLLTASTGGEFTLWNGTGFNFETIMQAHEAAIRALAYSHRDEWLLSGDHDGIIHYWQP-NFNNVETIRDSKDTVRDIAFAPND 220
           789********************************9999*******************************76.466677777788************ PP
   S: 107  dklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsng.kelvsgsldg 202
           +k+v++++d  +rv+d    +  + tlsgh+       +hp++ l+vsGs+D  v+lWd ++ ++l+tl+g h++ ++++ f++ +  +l++ ++d+
   Q: 221  SKFVVATDDAALRVYDFAAATRES-TLSGHHWEAKACDWHPTKGLIVSGSKDHLVKLWDPRSSRCLTTLRG-HKNTITKTLFERVRgMCLATSARDQ 315
           ***********************9.*********************************************9.***********987799******** PP
   S: 203  tvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgs 241
           t +++dl+  + +  l+gh++ v+s++ +p +  l+s++
   Q: 316  TARVFDLRMMRDICLLRGHDKDVSSLAWHPIHPNLLSTG 354
           ********999999***************7666666665 PP

Organism

Gaeumannomyces graminis

Protein Sequence
(Fasta)

MASSSTDPSQ EETGELPPVV RLGTTQNVHF TTKGARDTRT HITGHWNHLT NQYGARYKGP 60
VTDYSSTLVH WMRHRDARYK GGYQGEVERP SPSYIIDMLP PHARVTNAAD SLPVRHLHSS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCGAGTT CCAGCACCGA CCCGTCTCAG GAAGAGACTG GCGAGCTGCC TCCTGTTGTC 60
CGCCTCGGCA CAACCCAGAA CGTCCACTTC ACCACCAAGG GCGCCCGCGA TACCCGTACC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0005829--C:cytosol
GO:0005847--C:mRNA cleavage and polyadenylation specificity factor complex
GO:0000790--C:nuclear chromatin
GO:0031124--P:mRNA 3'-end processing

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001064	Aegilops tauschii	38.59	3.00e-84	304.00
IUUC-Aml-001363	Ailuropoda melanoleuca	39.80	7.00e-90	324.00
IUUC-Atr-003030	Amborella trichopoda	42.04	4.00e-90	323.00
IUUC-Apl-003409	Anas platyrhynchos	39.60	5.00e-88	318.00
IUUC-Aca-004694	Anolis carolinensis	39.44	4.00e-89	322.00
IUUC-Aly-006063	Arabidopsis lyrata	40.59	7.00e-93	333.00
IUUC-Ath-006583	Arabidopsis thaliana	42.23	1.00e-89	322.00
IUUC-Ago-007805	Ashbya gossypii	44.41	1.00e-89	322.00
IUUC-Acl-008075	Aspergillus clavatus	62.07	3.00e-163	566.00
IUUC-Afl-008582	Aspergillus flavus	62.47	6.00e-159	552.00
IUUC-Afu-008817	Aspergillus fumigatus	61.48	3.00e-140	490.00
IUUC-Ani-009391	Aspergillus nidulans	60.18	4.00e-153	533.00
IUUC-Ang-009750	Aspergillus niger	62.82	6.00e-118	415.00
IUUC-Aor-010085	Aspergillus oryzae	62.42	5.00e-165	572.00
IUUC-Ate-010397	Aspergillus terreus	61.56	5.00e-164	569.00
IUUC-Ame-010741	Astyanax mexicanus	43.40	5.00e-58	218.00
IUUC-Bgr-012169	Blumeria graminis	71.90	6.00e-168	582.00
IUUC-Bta-013265	Bos taurus	39.80	1.00e-89	323.00
IUUC-Bci-013762	Botrytis cinerea	73.91	0.00e+00	684.00
IUUC-Bdi-014849	Brachypodium distachyon	41.26	3.00e-92	331.00
IUUC-Bol-015325	Brassica oleracea	43.23	5.00e-95	340.00
IUUC-Bra-017187	Brassica rapa	43.49	3.00e-95	340.00
IUUC-Cel-018378	Caenorhabditis elegans	43.31	3.00e-90	324.00
IUUC-Cja-019547	Callithrix jacchus	39.80	8.00e-90	323.00
IUUC-Cfa-020031	Canis familiaris	39.80	1.00e-89	323.00
IUUC-Cpo-021554	Cavia porcellus	39.80	1.00e-89	323.00
IUUC-Cre-022830	Chlamydomonas reinhardtii	34.27	9.00e-52	196.00
IUUC-Csa-023146	Chlorocebus sabaeus	39.80	1.00e-89	323.00
IUUC-Cho-024679	Choloepus hoffmanni	41.57	2.00e-84	306.00
IUUC-Cin-025415	Ciona intestinalis	40.10	3.00e-83	301.00
IUUC-Csv-026003	Ciona savignyi	42.47	3.00e-83	300.00
IUUC-Cgl-026391	Colletotrichum gloeosporioides	72.68	1.00e-177	614.00
IUUC-Cne-026983	Cryptococcus neoformans	39.84	2.00e-80	291.00
IUUC-Cme-027147	Cyanidioschyzon merolae	41.84	8.00e-88	315.00
IUUC-Dre-028545	Danio rerio	39.45	7.00e-89	320.00
IUUC-Dno-029677	Dasypus novemcinctus	39.80	8.00e-90	324.00
IUUC-Dse-031371	Dothistroma septosporum	57.32	2.00e-138	484.00
IUUC-Dme-031663	Drosophila melanogaster	40.46	9.00e-89	320.00
IUUC-Ete-032511	Echinops telfairi	33.75	8.00e-68	251.00
IUUC-Eca-034152	Equus caballus	39.80	2.00e-89	323.00
IUUC-Eeu-034560	Erinaceus europaeus	27.42	8.00e-24	104.00
IUUC-Fca-035820	Felis catus	39.80	1.00e-89	323.00
IUUC-Fox-037958	Fusarium oxysporum	72.50	0.00e+00	650.00
IUUC-Fso-038162	Fusarium solani	72.77	0.00e+00	652.00
IUUC-Gmo-039708	Gadus morhua	39.49	2.00e-89	322.00
IUUC-Gga-040963	Gallus gallus	39.80	1.00e-89	323.00
IUUC-Gac-041541	Gasterosteus aculeatus	39.21	2.00e-86	312.00
IUUC-Gma-043757	Glycine max	42.53	1.00e-92	332.00
IUUC-Ggo-045564	Gorilla gorilla	39.80	1.00e-89	323.00
IUUC-Hsa-045833	Homo sapiens	39.80	1.00e-89	323.00
IUUC-Hvu-047848	Hordeum vulgare	38.01	3.00e-65	241.00
IUUC-Itr-048083	Ictidomys tridecemlineatus	39.80	1.00e-89	323.00
IUUC-Kpa-049308	Komagataella pastoris	49.03	2.00e-103	367.00
IUUC-Lch-050525	Latimeria chalumnae	40.00	2.00e-88	319.00
IUUC-Lpe-051364	Leersia perrieri	37.62	4.00e-77	281.00
IUUC-Loc-052696	Lepisosteus oculatus	40.00	2.00e-89	322.00
IUUC-Lma-052951	Leptosphaeria maculans	67.82	1.00e-162	564.00
IUUC-Laf-053653	Loxodonta africana	39.80	4.00e-89	322.00
IUUC-Mcc-055797	Macaca mulatta	39.80	1.00e-89	323.00
IUUC-Meu-056331	Macropus eugenii	44.24	5.00e-74	271.00
IUUC-Mor-057168	Magnaporthe oryzae	86.96	0.00e+00	776.00
IUUC-Mpo-057510	Magnaporthe poae	88.16	4.00e-158	549.00
IUUC-Mtr-058032	Medicago truncatula	41.16	7.00e-93	333.00
IUUC-Mla-058852	Melampsora laricipopulina	45.78	7.00e-101	359.00
IUUC-Mga-059311	Meleagris gallopavo	39.80	2.00e-89	323.00
IUUC-Mvi-060544	Microbotryum violaceum	48.53	3.00e-106	377.00
IUUC-Mmr-061143	Microcebus murinus	39.80	1.00e-89	323.00
IUUC-Mdo-061977	Monodelphis domestica	39.80	2.00e-89	323.00
IUUC-Mmu-063922	Mus musculus	39.80	1.00e-89	323.00
IUUC-Mac-064961	Musa acuminata	41.22	9.00e-93	333.00
IUUC-Mpu-066079	Mustela putorius furo	42.12	5.00e-86	311.00
IUUC-Mlu-067247	Myotis lucifugus	39.80	6.00e-90	324.00
IUUC-Nfi-068255	Neosartorya fischeri	64.74	8.00e-149	518.00
IUUC-Ncr-068909	Neurospora crassa	75.00	0.00e+00	665.00
IUUC-Nle-068994	Nomascus leucogenys	39.80	1.00e-89	323.00
IUUC-Opr-071079	Ochotona princeps	39.80	1.00e-89	323.00
IUUC-Ont-071971	Oreochromis niloticus	39.70	7.00e-89	320.00
IUUC-Oan-073135	Ornithorhynchus anatinus	41.92	3.00e-89	322.00
IUUC-Ocu-073982	Oryctolagus cuniculus	39.80	2.00e-89	322.00
IUUC-Oba-075297	Oryza barthii	38.11	5.00e-80	290.00
IUUC-Obr-076641	Oryza brachyantha	41.56	3.00e-92	331.00
IUUC-Ogl-077539	Oryza glaberrima	39.73	2.00e-66	245.00
IUUC-Ogu-078807	Oryza glumaepatula	38.11	6.00e-80	290.00
IUUC-Oin-079229	Oryza indica	41.26	7.00e-93	333.00
IUUC-Olo-080371	Oryza longistaminata	38.29	1.00e-79	288.00
IUUC-Ome-081149	Oryza meridionalis	37.86	4.00e-79	287.00
IUUC-Oni-082970	Oryza nivara	38.11	4.00e-80	290.00
IUUC-Opu-083415	Oryza punctata	37.86	2.00e-77	281.00
IUUC-Oru-085236	Oryza rufipogon	38.11	5.00e-80	290.00
IUUC-Ola-087421	Oryzias latipes	39.70	3.00e-88	317.00
IUUC-Olu-087821	Ostreococcus lucimarinus	40.48	4.00e-84	303.00
IUUC-Oga-088132	Otolemur garnettii	39.80	1.00e-89	323.00
IUUC-Oar-089513	Ovis aries	39.80	2.00e-89	323.00
IUUC-Ptr-090717	Pan troglodytes	39.80	1.00e-89	323.00
IUUC-Pan-092108	Papio anubis	39.80	1.00e-89	323.00
IUUC-Psi-093892	Pelodiscus sinensis	39.80	3.00e-89	322.00
IUUC-Pma-094561	Petromyzon marinus	41.58	3.00e-91	328.00
IUUC-Pno-094943	Phaeosphaeria nodorum	66.28	2.00e-170	590.00
IUUC-Ppa-095359	Physcomitrella patens	41.77	4.00e-93	333.00
IUUC-Pfo-096516	Poecilia formosa	40.10	4.00e-87	314.00
IUUC-Pab-097759	Pongo abelii	39.80	1.00e-89	323.00
IUUC-Pop-099553	Populus trichocarpa	41.71	8.00e-92	329.00
IUUC-Ppe-101957	Prunus persica	43.22	6.00e-95	340.00
IUUC-Pva-102918	Pteropus vampyrus	39.80	1.00e-89	323.00
IUUC-Pgr-103594	Puccinia graminis	45.27	2.00e-105	375.00
IUUC-Ptt-103879	Puccinia triticina	47.45	6.00e-92	330.00
IUUC-Pte-104419	Pyrenophora teres	65.83	1.00e-168	584.00
IUUC-Pyt-104718	Pyrenophora triticirepentis	66.50	1.00e-160	558.00
IUUC-Rno-105838	Rattus norvegicus	39.80	1.00e-89	323.00
IUUC-Sce-106331	Saccharomyces cerevisiae	42.26	6.00e-88	316.00
IUUC-Sha-107435	Sarcophilus harrisii	39.60	3.00e-89	322.00
IUUC-Sja-107796	Schizosaccharomyces japonicus	47.63	1.00e-113	401.00
IUUC-Spo-108163	Schizosaccharomyces pombe	48.63	1.00e-116	411.00
IUUC-Smo-109602	Selaginella moellendorffii	42.42	4.00e-93	333.00
IUUC-Sit-109729	Setaria italica	40.29	4.00e-91	327.00
IUUC-Sly-111679	Solanum lycopersicum	40.60	2.00e-94	338.00
IUUC-Sar-113157	Sorex araneus	39.80	2.00e-89	323.00
IUUC-Sbi-114853	Sorghum bicolor	39.56	8.00e-89	320.00
IUUC-Sre-115085	Sporisorium reilianum	45.41	5.00e-91	327.00
IUUC-Ssc-116286	Sus scrofa	39.90	3.00e-88	318.00
IUUC-Tgu-117219	Taeniopygia guttata	39.80	3.00e-89	322.00
IUUC-Tru-117550	Takifugu rubripes	39.70	2.00e-88	318.00
IUUC-Tsy-119294	Tarsius syrichta	39.80	7.00e-90	324.00
IUUC-Tni-120561	Tetraodon nigroviridis	39.70	2.00e-88	319.00
IUUC-Tca-121347	Theobroma cacao	42.21	5.00e-94	337.00
IUUC-Tre-122018	Trichoderma reesei	70.87	0.00e+00	633.00
IUUC-Tvi-122413	Trichoderma virens	70.41	0.00e+00	625.00
IUUC-Tae-123904	Triticum aestivum	40.05	3.00e-91	328.00
IUUC-Tme-127077	Tuber melanosporum	59.84	6.00e-142	496.00
IUUC-Tbe-127744	Tupaia belangeri	38.86	1.00e-42	167.00
IUUC-Ttr-128777	Tursiops truncatus	34.33	3.00e-68	252.00
IUUC-Uma-129568	Ustilago maydis	41.82	3.00e-86	311.00
IUUC-Vda-129834	Verticillium dahliae	69.25	2.00e-175	607.00
IUUC-Vvi-131360	Vitis vinifera	41.96	5.00e-93	333.00
IUUC-Xtr-132630	Xenopus tropicalis	40.05	3.00e-89	322.00
IUUC-Xma-133665	Xiphophorus maculatus	39.95	3.00e-88	318.00
IUUC-Yli-134556	Yarrowia lipolytica	41.34	1.00e-94	338.00
IUUC-Zma-135787	Zea mays	39.81	9.00e-91	326.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence