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Basic Information Integrated Annotations
Tag Content
UUCD2 ID IUUC-Ath-007493
UUCD1 version UUC-ArT-00207
Ensembl Protein ID AT1G01350.1
UniProt Accession Q8GX84; Q9LNI9; C3H1_ARATH
Genbank Protein ID AAF97335.1; AEE27275.1; BAC42988.1
Protein Name Zinc finger CCCH domain-containing protein 1
Genbank Nucleotide ID AC023628; CP002684; AK118376
Gene Name At1g01350; F6F3.14
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT1G01350 AT1G01350.1 AT1G01350.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family Identity E-Value Score Source Orthology
E3 activity/RING/RING 45.06 2.00e-52 204.00 IUUC-Hsa-047000
E3 activity/RING/RING 64.98 7.00e-100 360.00 IUUC-Osa-086166
Active Site
Position(s) Description Evidence
N/A N/A N/A
Organism Arabidopsis thaliana
Protein Sequence
(Fasta)
MSDSGEPKPS QQEEPLPQPA AQETQSQQVC TFFKKPTKSK NIRKRTIDAD EEDGDSKSES 60
SILQNLKKVA KPDSKLYFSS GPSKSSTTTS GAPERSVFHY DSSKEIQVQN DSGATATLET 120
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Protein Fasta Sequence


>IUUC-Ath-007493|E3,RING|Arabidopsis thaliana
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Nucleotide Sequence
(Fasta)
CCAAAATGAA GTAACCGCCC CACCATATGT TCCTTATTTC TTTTCTCTTC ACACTGATTT 60
ATTTTCTGTC GGAAAATACG GACGGCGTCG TCGTTCTTTT TGACGGTGTA GCTCACCGGC 120
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Nucleotide Fasta Sequence


>IUUC-Ath-007493|E3,RING|Arabidopsis thaliana
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0238--DNA-binding
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger
Interpro

IPR000571--Znf_CCCH
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS
PROSITE

PS50103--ZF_C3H1
PS00518--ZF_RING_1
PS50089--ZF_RING_2
Pfam

PF00642--zf-CCCH
SMART

SM00184--RING
SM00356--ZnF_C3H1
Gene Ontology

GO:0005684--C:U2-type spliceosomal complex
GO:0003677--F:DNA binding
GO:0008270--F:zinc ion binding
GO:0045292--P:mRNA cis splicing, via spliceosome
GO:0034247--P:snoRNA splicing
KEGG ath:AT1G01350
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000118 Aegilops tauschii 63.52 4.00e-105 374.00
IUUC-Aml-002002 Ailuropoda melanoleuca 45.06 2.00e-54 205.00
IUUC-Atr-003145 Amborella trichopoda 62.28 5.00e-110 389.00
IUUC-Apl-003440 Anas platyrhynchos 46.22 5.00e-53 200.00
IUUC-Aca-004421 Anolis carolinensis 40.13 2.00e-54 205.00
IUUC-Aly-006121 Arabidopsis lyrata 95.34 1.00e-175 608.00
IUUC-Ago-007731 Ashbya gossypii 36.84 2.00e-28 118.00
IUUC-Acl-008186 Aspergillus clavatus 41.72 2.00e-38 152.00
IUUC-Afl-008484 Aspergillus flavus 39.07 3.00e-33 135.00
IUUC-Afu-008971 Aspergillus fumigatus 30.80 2.00e-38 152.00
IUUC-Ani-009499 Aspergillus nidulans 43.04 2.00e-37 149.00
IUUC-Ang-009717 Aspergillus niger 49.32 6.00e-40 157.00
IUUC-Aor-009898 Aspergillus oryzae 39.07 3.00e-33 134.00
IUUC-Ate-010508 Aspergillus terreus 38.83 1.00e-36 146.00
IUUC-Ame-011925 Astyanax mexicanus 47.41 9.00e-57 213.00
IUUC-Bgr-012259 Blumeria graminis 45.83 1.00e-35 142.00
IUUC-Bta-012958 Bos taurus 46.55 2.00e-53 202.00
IUUC-Bci-013882 Botrytis cinerea 47.68 1.00e-38 152.00
IUUC-Bdi-014084 Brachypodium distachyon 65.41 1.00e-107 381.00
IUUC-Bol-016607 Brassica oleracea 84.39 1.00e-149 521.00
IUUC-Bra-017747 Brassica rapa 85.01 2.00e-159 554.00
IUUC-Cel-018698 Caenorhabditis elegans 45.45 1.00e-46 179.00
IUUC-Cja-019434 Callithrix jacchus 45.49 4.00e-55 207.00
IUUC-Cfa-020902 Canis familiaris 45.06 3.00e-54 204.00
IUUC-Cre-022885 Chlamydomonas reinhardtii 50.39 8.00e-69 253.00
IUUC-Csa-023933 Chlorocebus sabaeus 38.60 7.00e-54 203.00
IUUC-Cho-024587 Choloepus hoffmanni 34.53 5.00e-33 133.00
IUUC-Cin-025328 Ciona intestinalis 45.06 3.00e-56 211.00
IUUC-Csv-026148 Ciona savignyi 46.35 2.00e-57 215.00
IUUC-Cgl-026700 Colletotrichum gloeosporioides 48.09 8.00e-34 136.00
IUUC-Cne-026816 Cryptococcus neoformans 45.86 8.00e-42 163.00
IUUC-Dre-027744 Danio rerio 48.07 1.00e-58 219.00
IUUC-Dse-031155 Dothistroma septosporum 46.85 1.00e-35 142.00
IUUC-Dme-031788 Drosophila melanogaster 48.44 2.00e-57 215.00
IUUC-Ete-033013 Echinops telfairi 46.19 5.00e-53 200.00
IUUC-Eca-033460 Equus caballus 45.06 1.00e-54 205.00
IUUC-Fca-035525 Felis catus 45.49 6.00e-54 203.00
IUUC-Fal-037206 Ficedula albicollis 46.64 7.00e-54 203.00
IUUC-Fox-037959 Fusarium oxysporum 44.97 2.00e-37 149.00
IUUC-Fso-038348 Fusarium solani 44.30 2.00e-37 149.00
IUUC-Gmo-038718 Gadus morhua 40.24 9.00e-57 213.00
IUUC-Ggr-040114 Gaeumannomyces graminis 35.51 1.00e-41 163.00
IUUC-Gga-041037 Gallus gallus 45.31 2.00e-54 204.00
IUUC-Gac-042103 Gasterosteus aculeatus 40.58 2.00e-58 218.00
IUUC-Gma-043581 Glycine max 68.21 5.00e-120 423.00
IUUC-Ggo-044906 Gorilla gorilla 45.06 2.00e-54 205.00
IUUC-Hsa-047000 Homo sapiens 45.06 2.00e-54 205.00
IUUC-Hvu-047578 Hordeum vulgare 71.93 4.00e-43 165.00
IUUC-Itr-048102 Ictidomys tridecemlineatus 45.06 4.00e-55 207.00
IUUC-Kpa-049320 Komagataella pastoris 40.67 1.00e-33 135.00
IUUC-Lch-050488 Latimeria chalumnae 49.32 3.00e-56 211.00
IUUC-Lpe-051156 Leersia perrieri 73.23 8.00e-96 342.00
IUUC-Loc-052670 Lepisosteus oculatus 47.81 1.00e-56 212.00
IUUC-Lma-053326 Leptosphaeria maculans 44.87 3.00e-38 152.00
IUUC-Laf-053570 Loxodonta africana 39.46 2.00e-55 209.00
IUUC-Mcc-055375 Macaca mulatta 45.06 2.00e-54 205.00
IUUC-Meu-056191 Macropus eugenii 46.64 4.00e-53 201.00
IUUC-Mor-057193 Magnaporthe oryzae 44.52 1.00e-38 152.00
IUUC-Mpo-057603 Magnaporthe poae 34.73 7.00e-39 153.00
IUUC-Mtr-058182 Medicago truncatula 69.38 3.00e-123 434.00
IUUC-Mla-058921 Melampsora laricipopulina 43.45 2.00e-31 127.00
IUUC-Mga-059281 Meleagris gallopavo 45.31 1.00e-54 205.00
IUUC-Mvi-060317 Microbotryum violaceum 45.00 2.00e-34 139.00
IUUC-Mmr-061744 Microcebus murinus 44.64 5.00e-54 204.00
IUUC-Mmu-064400 Mus musculus 44.87 9.00e-56 209.00
IUUC-Mac-065265 Musa acuminata 74.59 8.00e-95 339.00
IUUC-Mpu-066867 Mustela putorius furo 45.49 3.00e-54 204.00
IUUC-Mlu-067828 Myotis lucifugus 44.64 6.00e-54 203.00
IUUC-Nfi-068575 Neosartorya fischeri 39.26 9.00e-35 139.00
IUUC-Ncr-068828 Neurospora crassa 46.71 4.00e-37 148.00
IUUC-Nle-069137 Nomascus leucogenys 45.06 1.00e-54 206.00
IUUC-Ont-071497 Oreochromis niloticus 46.98 7.00e-56 209.00
IUUC-Oan-073182 Ornithorhynchus anatinus 39.73 5.00e-54 204.00
IUUC-Ocu-073949 Oryctolagus cuniculus 44.64 5.00e-54 204.00
IUUC-Oba-075693 Oryza barthii 64.98 5.00e-97 346.00
IUUC-Obr-076128 Oryza brachyantha 72.22 4.00e-94 337.00
IUUC-Ogl-077323 Oryza glaberrima 64.98 5.00e-97 346.00
IUUC-Ogu-078766 Oryza glumaepatula 64.98 5.00e-97 346.00
IUUC-Oin-080054 Oryza indica 64.98 5.00e-97 346.00
IUUC-Olo-080325 Oryza longistaminata 62.50 3.00e-77 281.00
IUUC-Ome-081331 Oryza meridionalis 65.11 3.00e-101 360.00
IUUC-Oni-082786 Oryza nivara 64.69 2.00e-99 354.00
IUUC-Opu-083855 Oryza punctata 75.00 1.00e-94 338.00
IUUC-Oru-084304 Oryza rufipogon 64.98 5.00e-97 346.00
IUUC-Osa-086166 Oryza sativa 64.67 1.00e-97 348.00
IUUC-Ola-086368 Oryzias latipes 37.63 7.00e-51 193.00
IUUC-Olu-087624 Ostreococcus lucimarinus 50.21 3.00e-62 230.00
IUUC-Oga-088080 Otolemur garnettii 42.91 1.00e-54 206.00
IUUC-Oar-089545 Ovis aries 45.92 3.00e-54 204.00
IUUC-Ptr-090827 Pan troglodytes 45.06 1.00e-54 205.00
IUUC-Pan-092245 Papio anubis 45.06 2.00e-54 205.00
IUUC-Psi-093790 Pelodiscus sinensis 48.88 2.00e-55 208.00
IUUC-Pma-094326 Petromyzon marinus 50.22 5.00e-59 220.00
IUUC-Pno-095057 Phaeosphaeria nodorum 46.05 3.00e-39 154.00
IUUC-Ppa-095690 Physcomitrella patens 59.42 3.00e-100 357.00
IUUC-Pfo-097026 Poecilia formosa 41.07 7.00e-58 216.00
IUUC-Pab-098689 Pongo abelii 44.64 4.00e-54 204.00
IUUC-Pca-100687 Procavia capensis 44.64 4.00e-53 201.00
IUUC-Ppe-101155 Prunus persica 74.63 6.00e-120 422.00
IUUC-Pgr-103440 Puccinia graminis 49.68 1.00e-41 163.00
IUUC-Ptt-103893 Puccinia triticina 36.13 8.00e-27 113.00
IUUC-Pte-104377 Pyrenophora teres 47.97 5.00e-40 157.00
IUUC-Pyt-104731 Pyrenophora triticirepentis 47.97 5.00e-40 157.00
IUUC-Rno-105967 Rattus norvegicus 38.91 4.00e-56 210.00
IUUC-Sce-106215 Saccharomyces cerevisiae 41.50 6.00e-34 136.00
IUUC-Sha-107587 Sarcophilus harrisii 45.34 2.00e-54 205.00
IUUC-Sja-107955 Schizosaccharomyces japonicus 46.39 9.00e-39 154.00
IUUC-Spo-108336 Schizosaccharomyces pombe 31.02 1.00e-34 140.00
IUUC-Smo-108930 Selaginella moellendorffii 58.73 6.00e-86 310.00
IUUC-Sit-110234 Setaria italica 64.60 3.00e-98 350.00
IUUC-Sly-111790 Solanum lycopersicum 78.98 8.00e-82 295.00
IUUC-Stu-111994 Solanum tuberosum 68.77 4.00e-127 446.00
IUUC-Sar-113374 Sorex araneus 45.02 2.00e-53 201.00
IUUC-Sbi-114766 Sorghum bicolor 61.49 5.00e-100 356.00
IUUC-Sre-115021 Sporisorium reilianum 46.67 3.00e-45 174.00
IUUC-Ssc-115474 Sus scrofa 45.49 2.00e-54 205.00
IUUC-Tgu-116649 Taeniopygia guttata 39.01 4.00e-55 207.00
IUUC-Tru-117701 Takifugu rubripes 46.35 6.00e-57 213.00
IUUC-Tni-120607 Tetraodon nigroviridis 46.78 1.00e-54 205.00
IUUC-Tca-121278 Theobroma cacao 73.55 6.00e-118 416.00
IUUC-Tre-122006 Trichoderma reesei 42.76 9.00e-32 130.00
IUUC-Tvi-122670 Trichoderma virens 43.54 4.00e-36 144.00
IUUC-Tae-122716 Triticum aestivum 63.52 2.00e-104 371.00
IUUC-Tur-126208 Triticum urartu 72.61 3.00e-101 360.00
IUUC-Tme-126908 Tuber melanosporum 40.48 9.00e-35 140.00
IUUC-Tbe-127394 Tupaia belangeri 45.49 5.00e-55 207.00
IUUC-Uma-129339 Ustilago maydis 38.49 5.00e-47 181.00
IUUC-Vda-129895 Verticillium dahliae 37.90 4.00e-42 164.00
IUUC-Vpa-130519 Vicugna pacos 46.15 2.00e-53 202.00
IUUC-Vvi-131382 Vitis vinifera 68.93 1.00e-125 441.00
IUUC-Xtr-131923 Xenopus tropicalis 42.60 1.00e-59 223.00
IUUC-Xma-133705 Xiphophorus maculatus 40.37 1.00e-58 219.00
IUUC-Yli-134518 Yarrowia lipolytica 40.48 1.00e-35 142.00
IUUC-Zma-135029 Zea mays 62.22 4.00e-88 317.00
Created Date 25-Jun-2017

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