iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSLACG00000008031.2	ENSLACT00000009167.1	ENSLACP00000009098.1
ENSLACG00000008031.2	ENSLACT00000024990.1	ENSLACP00000022688.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/PHD	1.10e-16	60.9	359	404

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/PHD

   S: 2    kvClvCgeggedekslveCekCrewfHpaClklsveeelpnsekwiCpkCrs 53
           ++C vC++gge    ++ C+ C +++H  Cl ++  ++ p+ + w Cp C++
   Q: 359  DYCDVCQQGGE----IILCDTCPRAYHLVCLDPE-LDKAPEGK-WSCPHCEK 404
           79*********....9******************.*******7.******86 PP

Organism

Latimeria chalumnae

Protein Sequence
(Fasta)

MGEGGLHRLR TGEGGLFKFK FFRSLCFPDE EDRGFRENIE SEPAKKKKRP YKKKQKENKI 60
GKPRKRRKLE SEDEAESEKD DYRRKSDSES GDYVKKKKKK HKEKKEKKPK RPKKDADEDN 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GTCGGTAGTG ACCAAAAGTC GGTACCATCT GACGGCCGTT CAGTGGCCCC GTGGGAAATG 60
AGTTGGTGAA AATGGGGGAG GGTGGACTGC ACCGCCTAAG AACGGGGGAG GGTGGACTTT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR028722--CHD3
IPR012957--CHD_C2
IPR012958--CHD_N
IPR000953--Chromo/chromo_shadow_dom
IPR023780--Chromo_domain
IPR016197--Chromodomain-like
IPR002464--DNA/RNA_helicase_DEAH_CS
IPR009462--DUF1086
IPR009463--DUF1087
IPR014001--Helicase_ATP-bd
IPR001650--Helicase_C
IPR009071--HMG_box_dom
IPR027417--P-loop_NTPase
IPR000330--SNF2_N
IPR019786--Zinc_finger_PHD-type_CS
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50013--CHROMO_2
PS00690--DEAH_ATP_HELICASE
PS51192--HELICASE_ATP_BIND_1
PS51194--HELICASE_CTER
PS01359--ZF_PHD_1
PS50016--ZF_PHD_2

Pfam

PF08074--CHDCT2
PF08073--CHDNT
PF00385--Chromo
PF06461--DUF1086
PF06465--DUF1087
PF00271--Helicase_C
PF00628--PHD
PF00176--SNF2_N

SMART

SM00298--CHROMO
SM00487--DEXDc
SM01146--DUF1086
SM01147--DUF1087
SM00490--HELICc
SM00249--PHD

Gene Ontology

GO:0016581--C:NuRD complex
GO:0005524--F:ATP binding
GO:0008026--F:ATP-dependent helicase activity
GO:0003677--F:DNA binding
GO:0008270--F:zinc ion binding
GO:0007417--P:central nervous system development
GO:0051297--P:centrosome organization
GO:0006325--P:chromatin organization
GO:0048589--P:developmental growth
GO:0006355--P:regulation of transcription, DNA-templated
GO:0007051--P:spindle organization

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001701	Ailuropoda melanoleuca	68.47	0.00e+00	2241.00
IUUC-Aca-004560	Anolis carolinensis	77.48	0.00e+00	2010.00
IUUC-Aly-005645	Arabidopsis lyrata	38.38	9.00e-150	525.00
IUUC-Ath-007406	Arabidopsis thaliana	39.36	3.00e-154	540.00
IUUC-Afl-008556	Aspergillus flavus	32.50	9.00e-69	255.00
IUUC-Afu-008799	Aspergillus fumigatus	32.48	2.00e-72	267.00
IUUC-Ani-009127	Aspergillus nidulans	32.53	3.00e-71	263.00
IUUC-Aor-010184	Aspergillus oryzae	32.87	3.00e-70	260.00
IUUC-Ame-011352	Astyanax mexicanus	76.24	0.00e+00	1970.00
IUUC-Bta-012868	Bos taurus	77.41	0.00e+00	2038.00
IUUC-Bol-016073	Brassica oleracea	39.59	5.00e-155	543.00
IUUC-Bra-016724	Brassica rapa	39.70	2.00e-155	544.00
IUUC-Cel-018108	Caenorhabditis elegans	56.37	0.00e+00	1293.00
IUUC-Cja-019018	Callithrix jacchus	73.75	0.00e+00	2400.00
IUUC-Cfa-021055	Canis familiaris	72.39	0.00e+00	2422.00
IUUC-Cpo-021523	Cavia porcellus	77.41	0.00e+00	2047.00
IUUC-Csa-024136	Chlorocebus sabaeus	77.15	0.00e+00	1986.00
IUUC-Cin-025444	Ciona intestinalis	34.83	2.00e-73	270.00
IUUC-Csv-025847	Ciona savignyi	52.55	0.00e+00	1334.00
IUUC-Cgl-026383	Colletotrichum gloeosporioides	31.09	3.00e-60	226.00
IUUC-Cne-027090	Cryptococcus neoformans	33.45	3.00e-66	246.00
IUUC-Dre-028043	Danio rerio	77.09	0.00e+00	1942.00
IUUC-Dor-030167	Dipodomys ordii	76.56	0.00e+00	2010.00
IUUC-Dme-032150	Drosophila melanogaster	58.68	0.00e+00	1368.00
IUUC-Ete-032757	Echinops telfairi	72.35	0.00e+00	1798.00
IUUC-Eca-034372	Equus caballus	73.25	0.00e+00	1899.00
IUUC-Eeu-034777	Erinaceus europaeus	71.31	0.00e+00	1837.00
IUUC-Fca-036043	Felis catus	77.28	0.00e+00	2027.00
IUUC-Gmo-038957	Gadus morhua	73.06	0.00e+00	1344.00
IUUC-Gac-041375	Gasterosteus aculeatus	76.45	0.00e+00	1823.00
IUUC-Gma-043999	Glycine max	44.53	0.00e+00	655.00
IUUC-Ggo-045538	Gorilla gorilla	77.01	0.00e+00	1989.00
IUUC-Hsa-045916	Homo sapiens	77.08	0.00e+00	1993.00
IUUC-Hvu-047408	Hordeum vulgare	35.67	1.00e-73	271.00
IUUC-Itr-048463	Ictidomys tridecemlineatus	77.28	0.00e+00	2027.00
IUUC-Lpe-050987	Leersia perrieri	33.89	7.00e-73	268.00
IUUC-Loc-052383	Lepisosteus oculatus	76.81	0.00e+00	1976.00
IUUC-Lma-053118	Leptosphaeria maculans	33.46	6.00e-71	262.00
IUUC-Laf-053870	Loxodonta africana	82.67	0.00e+00	1862.00
IUUC-Mcc-055499	Macaca mulatta	71.21	0.00e+00	1799.00
IUUC-Meu-056292	Macropus eugenii	70.06	0.00e+00	984.00
IUUC-Mtr-058432	Medicago truncatula	32.78	5.00e-72	265.00
IUUC-Mmr-061223	Microcebus murinus	75.96	0.00e+00	1998.00
IUUC-Mdo-062971	Monodelphis domestica	79.33	0.00e+00	1912.00
IUUC-Mmu-063920	Mus musculus	72.55	0.00e+00	2392.00
IUUC-Mpu-065809	Mustela putorius furo	82.81	0.00e+00	1861.00
IUUC-Mlu-067355	Myotis lucifugus	77.08	0.00e+00	2017.00
IUUC-Nle-069842	Nomascus leucogenys	77.01	0.00e+00	1985.00
IUUC-Opr-070960	Ochotona princeps	72.54	0.00e+00	2377.00
IUUC-Ont-072235	Oreochromis niloticus	75.59	0.00e+00	1981.00
IUUC-Oan-072885	Ornithorhynchus anatinus	59.88	0.00e+00	1428.00
IUUC-Ocu-074438	Oryctolagus cuniculus	76.23	0.00e+00	2020.00
IUUC-Ogu-078837	Oryza glumaepatula	33.70	4.00e-72	266.00
IUUC-Oin-079623	Oryza indica	33.70	2.00e-72	267.00
IUUC-Ome-081105	Oryza meridionalis	33.70	2.00e-72	267.00
IUUC-Oni-082598	Oryza nivara	33.70	4.00e-72	266.00
IUUC-Oru-084219	Oryza rufipogon	33.70	2.00e-72	266.00
IUUC-Osa-085461	Oryza sativa	33.70	2.00e-72	266.00
IUUC-Olu-087812	Ostreococcus lucimarinus	33.74	5.00e-69	255.00
IUUC-Oga-088374	Otolemur garnettii	77.08	0.00e+00	2014.00
IUUC-Oar-089784	Ovis aries	77.25	0.00e+00	2039.00
IUUC-Ptr-090799	Pan troglodytes	77.08	0.00e+00	1994.00
IUUC-Pan-092282	Papio anubis	70.27	0.00e+00	2291.00
IUUC-Psi-093007	Pelodiscus sinensis	74.58	0.00e+00	1745.00
IUUC-Pma-094725	Petromyzon marinus	35.74	3.00e-82	300.00
IUUC-Pno-095130	Phaeosphaeria nodorum	31.24	5.00e-62	233.00
IUUC-Pfo-096265	Poecilia formosa	76.73	0.00e+00	1989.00
IUUC-Pab-098174	Pongo abelii	73.96	0.00e+00	1855.00
IUUC-Pop-099986	Populus trichocarpa	33.95	7.00e-72	265.00
IUUC-Pca-100559	Procavia capensis	68.77	0.00e+00	1738.00
IUUC-Pgr-103272	Puccinia graminis	30.55	1.00e-38	155.00
IUUC-Ptt-103880	Puccinia triticina	31.47	2.00e-66	248.00
IUUC-Rno-104884	Rattus norvegicus	78.77	0.00e+00	1919.00
IUUC-Sha-107233	Sarcophilus harrisii	77.72	0.00e+00	2001.00
IUUC-Spo-108154	Schizosaccharomyces pombe	33.03	5.00e-74	273.00
IUUC-Smo-108946	Selaginella moellendorffii	43.45	9.00e-149	522.00
IUUC-Sit-110023	Setaria italica	33.33	7.00e-74	272.00
IUUC-Sly-110976	Solanum lycopersicum	40.79	0.00e+00	699.00
IUUC-Sre-114983	Sporisorium reilianum	30.94	6.00e-57	216.00
IUUC-Ssc-115751	Sus scrofa	77.15	0.00e+00	2025.00
IUUC-Tru-118648	Takifugu rubripes	73.99	0.00e+00	1994.00
IUUC-Tni-120039	Tetraodon nigroviridis	75.73	0.00e+00	1973.00
IUUC-Tca-121797	Theobroma cacao	33.56	2.00e-73	270.00
IUUC-Tme-127106	Tuber melanosporum	37.77	4.00e-80	293.00
IUUC-Tbe-128117	Tupaia belangeri	81.07	0.00e+00	1058.00
IUUC-Ttr-128301	Tursiops truncatus	70.81	0.00e+00	2145.00
IUUC-Uma-129321	Ustilago maydis	31.12	5.00e-60	226.00
IUUC-Vpa-130209	Vicugna pacos	91.02	8.00e-169	588.00
IUUC-Vvi-130849	Vitis vinifera	40.66	0.00e+00	703.00
IUUC-Xtr-132833	Xenopus tropicalis	70.74	0.00e+00	1793.00
IUUC-Xma-133816	Xiphophorus maculatus	76.51	0.00e+00	1988.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence