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Tag Content
UUCD2 ID IUUC-Ssc-116089
UUCD1 version UUC-SuS-00160
Ensembl Protein ID ENSSSCP00000003082.2
UniProt Accession F1RNX0; F1RNX0_PIG
Genbank Protein ID ENSSSCP00000003082
Protein Name Uncharacterized protein
Genbank Nucleotide ID CU638683
Gene Name WDR88
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSSSCG00000002862.2 ENSSSCT00000003163.2 ENSSSCP00000003082.2
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 2.40e-34 116.2 57 92
UBD/Beta-Prp 1.60e-49 169.0 51 250
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sdtllvsGsdDgtikvWDlrtgv 34
    gH+ v++++f +dt l+sGs+D+t+k+WD +g
   Q: 57 GHQHIVSSCHFcvDDTKLLSGSYDCTVKLWDAMDGA 92
    89**********777****************77765 PP
   


   UBD/Beta-Prp

   S: 86   cvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrt 174
    ++ ++kgh++ v s++f+ ++ kl+sGs d t+++wd g ++++++ + v +v d++ +v++s+D+tvr Wdl+tgkll +
   Q: 51 PFKIMKGHQHIVSSCHFCVDDTKLLSGSYDCTVKLWDAMDGAVVRDFEPAPGAPVIECSVTADSRRIVAASYDKTVRAWDLETGKLLWK 139
    57899****************************************9777777777777777778************************* PP
   S: 175 ltgghtdsvyslsfdsngkelvsg.sldgtvklwdlqtgecvrtlng.htdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlq 261
    l+ h+ + s +f+++gk++vsg + d + + d + +++v ++ h v+ f+p+++ ++s+s D+si+iWd++s+ +l t++
   Q: 140 LS--HETFIVSCKFSPDGKYVVSGlDVDCGICIIDAKDTTTVSHIKDhHGMSVTACCFDPDSQKVASVSFDRSIKIWDVTSQATLLTIT 226
    *5..9******************966799********8888888887355899************************************ PP
   S: 262 lhnssvisvavlsfgdnvlvlgse 285
    + +++ is +++ f+ +++ +g++
   Q: 227 KAHTNAISNCCFTFSIWNVHTGEF 250
    ***999999999998887777765 PP
   

Organism Sus scrofa
Protein Sequence
(Fasta)
LEVRRGRLLP SPDPLALDRE ASPPEKHWTP EKTLWNEKTS WGDQEPLSKI PFKIMKGHQH 60
IVSSCHFCVD DTKLLSGSYD CTVKLWDAMD GAVVRDFEPA PGAPVIECSV TADSRRIVAA 120
It may take some time, please wait.

Protein Fasta Sequence



>IUUC-Ssc-116089|E3,WD_repeat;UBD,Beta-Prp|Sus scrofa
Please wait for a moment...
Nucleotide Sequence
(Fasta)
TTGGAGGTGC GGCGGGGCCG GCTGTTGCCC TCGCCTGACC CCCTGGCCTT GGACAGGGAG 60
GCGTCACCAC CCGAAAAGCA CTGGACGCCA GAGAAGACAT TATGGAACGA GAAGACGTCC 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Ssc-116089|E3,WD_repeat;UBD,Beta-Prp|Sus scrofa
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR018391--PQQ_beta_propeller_repeat
IPR011047--Quinoprotein_ADH-like_supfam
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00564--PQQ
SM00320--WD40

Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aml-001328 Ailuropoda melanoleuca 78.80 5.00e-149 520.00
IUUC-Apl-003571 Anas platyrhynchos 53.46 1.00e-114 405.00
IUUC-Aca-005232 Anolis carolinensis 46.06 6.00e-67 246.00
IUUC-Ame-011833 Astyanax mexicanus 46.67 3.00e-45 174.00
IUUC-Bta-013562 Bos taurus 78.54 0.00e+00 649.00
IUUC-Cja-019202 Callithrix jacchus 72.73 1.00e-175 609.00
IUUC-Cfa-021095 Canis familiaris 75.44 4.00e-174 603.00
IUUC-Cpo-022170 Cavia porcellus 72.22 1.00e-166 578.00
IUUC-Csa-024218 Chlorocebus sabaeus 75.43 0.00e+00 632.00
IUUC-Cho-024561 Choloepus hoffmanni 72.47 1.00e-120 425.00
IUUC-Dno-029722 Dasypus novemcinctus 72.73 3.00e-149 520.00
IUUC-Dor-030464 Dipodomys ordii 65.53 1.00e-124 438.00
IUUC-Ete-032931 Echinops telfairi 60.12 7.00e-107 379.00
IUUC-Eca-034428 Equus caballus 82.58 1.00e-176 611.00
IUUC-Eeu-034568 Erinaceus europaeus 58.31 5.00e-106 377.00
IUUC-Fca-035707 Felis catus 79.49 0.00e+00 638.00
IUUC-Gmo-039646 Gadus morhua 41.48 2.00e-63 235.00
IUUC-Gga-040710 Gallus gallus 53.01 1.00e-106 379.00
IUUC-Ggo-044611 Gorilla gorilla 49.24 2.00e-98 351.00
IUUC-Hsa-046138 Homo sapiens 74.15 1.00e-179 622.00
IUUC-Itr-048283 Ictidomys tridecemlineatus 65.62 2.00e-155 541.00
IUUC-Lch-050329 Latimeria chalumnae 48.72 4.00e-99 354.00
IUUC-Loc-052876 Lepisosteus oculatus 39.38 3.00e-32 130.00
IUUC-Laf-053777 Loxodonta africana 73.16 7.00e-178 616.00
IUUC-Mcc-055771 Macaca mulatta 74.69 0.00e+00 629.00
IUUC-Meu-056584 Macropus eugenii 43.94 4.00e-75 274.00
IUUC-Mga-059818 Meleagris gallopavo 52.44 1.00e-114 405.00
IUUC-Mmr-060639 Microcebus murinus 71.55 5.00e-149 520.00
IUUC-Mdo-062321 Monodelphis domestica 53.35 2.00e-128 451.00
IUUC-Mpu-066849 Mustela putorius furo 71.23 3.00e-172 597.00
IUUC-Mlu-067238 Myotis lucifugus 72.30 3.00e-174 603.00
IUUC-Ont-071230 Oreochromis niloticus 39.67 1.00e-69 256.00
IUUC-Oan-072698 Ornithorhynchus anatinus 56.27 1.00e-131 462.00
IUUC-Ocu-074219 Oryctolagus cuniculus 73.12 3.00e-161 560.00
IUUC-Oga-087913 Otolemur garnettii 67.15 5.00e-164 570.00
IUUC-Oar-089977 Ovis aries 80.21 0.00e+00 636.00
IUUC-Ptr-090876 Pan troglodytes 74.88 0.00e+00 629.00
IUUC-Pan-091936 Papio anubis 75.53 3.00e-105 374.00
IUUC-Psi-093015 Pelodiscus sinensis 48.40 3.00e-66 244.00
IUUC-Pma-094552 Petromyzon marinus 34.46 9.00e-32 129.00
IUUC-Pfo-096240 Poecilia formosa 38.36 3.00e-64 240.00
IUUC-Pab-097983 Pongo abelii 66.10 2.00e-153 534.00
IUUC-Pca-100752 Procavia capensis 56.86 6.00e-123 434.00
IUUC-Pva-102199 Pteropus vampyrus 70.21 4.00e-170 590.00
IUUC-Rno-106062 Rattus norvegicus 65.67 1.00e-156 545.00
IUUC-Sar-113167 Sorex araneus 53.57 5.00e-37 147.00
IUUC-Tbe-127860 Tupaia belangeri 63.13 2.00e-146 512.00
IUUC-Ttr-129152 Tursiops truncatus 77.37 0.00e+00 630.00
IUUC-Vpa-130745 Vicugna pacos 75.60 8.00e-179 619.00
IUUC-Xtr-131982 Xenopus tropicalis 26.85 8.00e-24 104.00
Created Date 25-Jun-2017

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