iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Rno-105631

Ensembl Protein ID

ENSRNOP00000013606.7

UniProt Accession

A0A140UHX2; A0A140UHX2_RAT

Genbank Protein ID

ENSRNOP00000013606

Protein Name

Zinc finger, C3HC-type-containing 1

Genbank Nucleotide ID

AC128293

Gene Name

Zc3hc1

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSRNOG00000010154.7	ENSRNOT00000013604.7	ENSRNOP00000013606.7

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
miRNAMap	RAID2
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
E3 adaptor/Cullin RING/SCF/F-box	85.46	0.00e+00	816.00	IUUC-Hsa-046932

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

MAASCEGQLF AAGIEKTWGA VVRSPEGTPQ KVRQLIDEGI VPEEGGTEPK DTSATFQSVD 60
GSPQAEQPPL ESTSKEAFFH RVETFSISFS WAGKPPELSP LICAKYGWVT VECDMLKCSS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GGAACACAAC TCCGGAACGG ACCAAGATGG CGGCTTCCTG TGAGGGGCAG CTGTTTGCCG 60
CGGGTATTGA AAAGACTTGG GGTGCAGTCG TTCGTTCCCC TGAAGGGACA CCCCAGAAAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1267--Proteomics identification
KW-1185--Reference proteome

Interpro

IPR013909--NIPA/Rsm1
IPR012935--Znf_C3HC-like

Pfam

PF08600--Rsm1
PF07967--zf-C3HC

Gene Ontology

GO:0031965--C:nuclear membrane
GO:0008270--F:zinc ion binding
GO:2001240--P:negative regulation of extrinsic apoptotic signaling pathway in absence of ligand

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-002290	Ailuropoda melanoleuca	84.92	0.00e+00	780.00
IUUC-Atr-003126	Amborella trichopoda	25.59	7.00e-12	66.20
IUUC-Aca-004720	Anolis carolinensis	59.06	5.00e-141	494.00
IUUC-Ath-006863	Arabidopsis thaliana	25.98	1.00e-10	62.00
IUUC-Bta-012342	Bos taurus	85.29	0.00e+00	792.00
IUUC-Bra-016709	Brassica rapa	27.66	2.00e-10	62.00
IUUC-Cja-019724	Callithrix jacchus	83.17	0.00e+00	769.00
IUUC-Cfa-020918	Canis familiaris	86.88	0.00e+00	815.00
IUUC-Cpo-022028	Cavia porcellus	79.60	0.00e+00	751.00
IUUC-Csa-023238	Chlorocebus sabaeus	85.79	2.00e-158	551.00
IUUC-Cho-024962	Choloepus hoffmanni	84.51	0.00e+00	734.00
IUUC-Dre-027658	Danio rerio	45.29	7.00e-104	370.00
IUUC-Dno-028891	Dasypus novemcinctus	83.50	0.00e+00	801.00
IUUC-Dse-031338	Dothistroma septosporum	24.15	6.00e-08	52.40
IUUC-Eca-033965	Equus caballus	84.52	0.00e+00	753.00
IUUC-Eeu-034997	Erinaceus europaeus	64.48	2.00e-77	283.00
IUUC-Fca-036112	Felis catus	84.69	0.00e+00	764.00
IUUC-Gmo-039188	Gadus morhua	40.99	8.00e-90	324.00
IUUC-Ggr-039778	Gaeumannomyces graminis	22.98	4.00e-10	59.70
IUUC-Gga-040879	Gallus gallus	59.31	9.00e-145	506.00
IUUC-Gac-041886	Gasterosteus aculeatus	41.77	5.00e-90	325.00
IUUC-Gma-043122	Glycine max	28.34	2.00e-12	67.80
IUUC-Ggo-045489	Gorilla gorilla	84.92	0.00e+00	788.00
IUUC-Hsa-046932	Homo sapiens	85.46	0.00e+00	790.00
IUUC-Itr-048776	Ictidomys tridecemlineatus	84.10	0.00e+00	797.00
IUUC-Lch-050627	Latimeria chalumnae	53.64	5.00e-113	401.00
IUUC-Loc-052294	Lepisosteus oculatus	48.67	1.00e-108	386.00
IUUC-Laf-053461	Loxodonta africana	82.21	0.00e+00	790.00
IUUC-Mcc-055411	Macaca mulatta	85.49	0.00e+00	770.00
IUUC-Meu-056049	Macropus eugenii	75.05	0.00e+00	719.00
IUUC-Mga-059941	Meleagris gallopavo	59.92	8.00e-135	473.00
IUUC-Mmr-061230	Microcebus murinus	84.89	0.00e+00	796.00
IUUC-Mdo-062254	Monodelphis domestica	61.60	2.00e-163	568.00
IUUC-Mmu-063183	Mus musculus	92.63	0.00e+00	876.00
IUUC-Mpu-066430	Mustela putorius furo	84.58	0.00e+00	747.00
IUUC-Mlu-067318	Myotis lucifugus	83.76	0.00e+00	732.00
IUUC-Nle-069871	Nomascus leucogenys	83.86	0.00e+00	775.00
IUUC-Opr-071023	Ochotona princeps	76.83	3.00e-97	348.00
IUUC-Ont-071854	Oreochromis niloticus	41.10	2.00e-85	309.00
IUUC-Ocu-074725	Oryctolagus cuniculus	80.79	0.00e+00	759.00
IUUC-Ogl-076943	Oryza glaberrima	25.49	1.00e-13	72.40
IUUC-Ogu-078596	Oryza glumaepatula	26.13	1.00e-13	72.00
IUUC-Ome-081625	Oryza meridionalis	26.13	3.00e-13	70.90
IUUC-Oru-084191	Oryza rufipogon	26.13	2.00e-13	71.60
IUUC-Osa-085482	Oryza sativa	26.13	1.00e-13	72.00
IUUC-Ola-086385	Oryzias latipes	40.89	4.00e-93	335.00
IUUC-Oga-089112	Otolemur garnettii	79.32	0.00e+00	714.00
IUUC-Oar-089630	Ovis aries	85.35	0.00e+00	796.00
IUUC-Ptr-091222	Pan troglodytes	85.06	0.00e+00	788.00
IUUC-Pan-092930	Papio anubis	85.15	0.00e+00	772.00
IUUC-Psi-093330	Pelodiscus sinensis	59.41	2.00e-125	442.00
IUUC-Ppa-095707	Physcomitrella patens	25.40	3.00e-13	70.90
IUUC-Pfo-096184	Poecilia formosa	38.80	2.00e-83	302.00
IUUC-Pab-097781	Pongo abelii	78.37	0.00e+00	708.00
IUUC-Pop-099933	Populus trichocarpa	22.92	1.00e-07	52.00
IUUC-Pca-101038	Procavia capensis	79.61	0.00e+00	684.00
IUUC-Pva-102707	Pteropus vampyrus	80.82	0.00e+00	700.00
IUUC-Sha-106923	Sarcophilus harrisii	74.84	0.00e+00	645.00
IUUC-Smo-109192	Selaginella moellendorffii	25.00	6.00e-14	72.80
IUUC-Sly-111755	Solanum lycopersicum	31.71	2.00e-11	65.10
IUUC-Sar-113436	Sorex araneus	74.50	0.00e+00	664.00
IUUC-Ssc-115977	Sus scrofa	83.33	1.00e-149	522.00
IUUC-Tni-120167	Tetraodon nigroviridis	39.59	7.00e-84	304.00
IUUC-Tbe-127998	Tupaia belangeri	83.79	3.00e-157	548.00
IUUC-Ttr-128617	Tursiops truncatus	84.62	0.00e+00	757.00
IUUC-Vda-129867	Verticillium dahliae	23.71	1.00e-07	51.20
IUUC-Xtr-132321	Xenopus tropicalis	51.83	1.00e-109	389.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence