iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

   S: 1    CaiCledfkdg..plvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           C iCl++++dg  ++ lpC H+fh+ C+ +w         + +CP+Cr
   Q: 288  CTICLSMLEDGedVRRLPCMHLFHQLCVDQW------LAMSKKCPICR 329
           ********66555******************......999999****8 PP

Organism

Rattus norvegicus

Protein Sequence
(Fasta)

QVLTEIPVFA STGAPFQRSQ HPHATSCRHF HLGPPQPQQL APDFPLAHPV QSQPGLSAHM 60
APAHQHSGTL HQSLTPLPTL QFQDVTGPSF LPQALHQQYL LQQQLLEAQH RRLVSHPRRS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CAGGTCCTCA CGGAGATTCC TGTCTTTTGC CTCTACAGGT GCCCCCTTTC AAAGGTCTCA 60
GCATCCTCAC GCTACCTCCT GCCGCCACTT CCACCTGGGC CCCCCGCAGC CGCAGCAGCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001841--Znf_RING
IPR011016--Znf_RING-CH
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING
SM00744--RINGv

Gene Ontology

GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0043234--C:protein complex
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0035136--P:forelimb morphogenesis
GO:0060384--P:innervation
GO:0008045--P:motor neuron axon guidance
GO:0010259--P:multicellular organism aging
GO:0061061--P:muscle structure development
GO:0030513--P:positive regulation of BMP signaling pathway
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0000209--P:protein polyubiquitination
GO:0042787--P:protein ubiquitination involved in ubiquitin-dependent protein catabolic process

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000618	Aegilops tauschii	35.19	2.00e-14	74.30
IUUC-Aml-001791	Ailuropoda melanoleuca	96.45	5.00e-168	583.00
IUUC-Atr-003149	Amborella trichopoda	52.54	4.00e-16	76.30
IUUC-Apl-003783	Anas platyrhynchos	68.99	1.00e-121	429.00
IUUC-Aca-005299	Anolis carolinensis	82.51	1.00e-127	449.00
IUUC-Aly-005415	Arabidopsis lyrata	36.63	1.00e-16	80.10
IUUC-Ame-011948	Astyanax mexicanus	67.54	2.00e-116	412.00
IUUC-Bta-012470	Bos taurus	95.50	6.00e-164	569.00
IUUC-Bdi-014014	Brachypodium distachyon	37.39	1.00e-15	77.40
IUUC-Bol-016611	Brassica oleracea	36.11	8.00e-14	71.60
IUUC-Cel-018118	Caenorhabditis elegans	41.18	9.00e-16	78.20
IUUC-Cja-019798	Callithrix jacchus	96.39	8.00e-171	592.00
IUUC-Cfa-020297	Canis familiaris	95.56	1.00e-167	582.00
IUUC-Cpo-022225	Cavia porcellus	96.45	1.00e-175	608.00
IUUC-Csa-024018	Chlorocebus sabaeus	98.17	5.00e-173	599.00
IUUC-Cne-026985	Cryptococcus neoformans	39.05	2.00e-10	62.00
IUUC-Cme-027312	Cyanidioschyzon merolae	49.23	6.00e-13	68.20
IUUC-Dre-028365	Danio rerio	67.88	4.00e-103	367.00
IUUC-Dno-029962	Dasypus novemcinctus	95.22	2.00e-154	538.00
IUUC-Dor-030727	Dipodomys ordii	94.67	4.00e-168	583.00
IUUC-Eca-033911	Equus caballus	97.87	1.00e-167	582.00
IUUC-Fca-035641	Felis catus	96.75	4.00e-170	590.00
IUUC-Fal-037200	Ficedula albicollis	84.98	6.00e-142	496.00
IUUC-Fox-037754	Fusarium oxysporum	38.27	6.00e-12	63.90
IUUC-Gmo-039613	Gadus morhua	74.68	8.00e-85	306.00
IUUC-Gga-040277	Gallus gallus	86.01	5.00e-123	433.00
IUUC-Gac-042544	Gasterosteus aculeatus	60.23	1.00e-102	366.00
IUUC-Gma-044396	Glycine max	39.39	2.00e-15	77.80
IUUC-Ggo-044631	Gorilla gorilla	85.80	3.00e-164	570.00
IUUC-Hsa-046864	Homo sapiens	96.45	1.00e-174	605.00
IUUC-Hvu-047524	Hordeum vulgare	33.66	7.00e-14	70.50
IUUC-Itr-048602	Ictidomys tridecemlineatus	98.17	8.00e-175	605.00
IUUC-Lch-049656	Latimeria chalumnae	74.48	7.00e-107	380.00
IUUC-Lpe-050720	Leersia perrieri	34.34	7.00e-15	74.70
IUUC-Loc-052046	Lepisosteus oculatus	75.22	2.00e-131	461.00
IUUC-Laf-053554	Loxodonta africana	98.05	6.00e-84	302.00
IUUC-Mcc-055198	Macaca mulatta	97.87	3.00e-173	600.00
IUUC-Meu-055988	Macropus eugenii	82.87	1.00e-121	429.00
IUUC-Mtr-057649	Medicago truncatula	36.36	5.00e-14	73.20
IUUC-Mga-059245	Meleagris gallopavo	88.31	6.00e-75	272.00
IUUC-Mvi-060267	Microbotryum violaceum	32.69	1.00e-10	62.40
IUUC-Mmr-061389	Microcebus murinus	96.45	6.00e-164	569.00
IUUC-Mdo-062317	Monodelphis domestica	94.21	1.00e-149	522.00
IUUC-Mmu-063102	Mus musculus	97.34	1.00e-177	615.00
IUUC-Mac-064633	Musa acuminata	40.82	4.00e-15	76.30
IUUC-Mpu-066793	Mustela putorius furo	97.90	9.00e-165	572.00
IUUC-Nle-069235	Nomascus leucogenys	96.45	9.00e-174	602.00
IUUC-Opr-070646	Ochotona princeps	97.25	9.00e-161	559.00
IUUC-Ont-072005	Oreochromis niloticus	67.83	3.00e-107	381.00
IUUC-Oan-072924	Ornithorhynchus anatinus	76.19	1.00e-114	405.00
IUUC-Ocu-074718	Oryctolagus cuniculus	95.27	5.00e-173	600.00
IUUC-Oba-075466	Oryza barthii	33.33	4.00e-15	75.90
IUUC-Obr-076511	Oryza brachyantha	34.03	4.00e-14	72.40
IUUC-Ogl-076994	Oryza glaberrima	33.33	4.00e-15	75.90
IUUC-Ogu-078200	Oryza glumaepatula	33.33	4.00e-15	75.90
IUUC-Oin-079508	Oryza indica	33.33	4.00e-15	75.90
IUUC-Olo-080855	Oryza longistaminata	33.33	4.00e-15	76.30
IUUC-Ome-081841	Oryza meridionalis	33.33	4.00e-15	75.90
IUUC-Oni-082470	Oryza nivara	33.33	4.00e-15	75.90
IUUC-Opu-084138	Oryza punctata	32.47	3.00e-15	76.60
IUUC-Oru-085181	Oryza rufipogon	33.33	4.00e-15	75.90
IUUC-Osa-086143	Oryza sativa	33.33	4.00e-15	75.90
IUUC-Ola-087143	Oryzias latipes	69.05	1.00e-107	382.00
IUUC-Olu-087774	Ostreococcus lucimarinus	42.59	5.00e-13	66.20
IUUC-Oga-087993	Otolemur garnettii	97.04	6.00e-177	613.00
IUUC-Oar-089588	Ovis aries	94.89	1.00e-163	568.00
IUUC-Ptr-091341	Pan troglodytes	96.45	1.00e-174	605.00
IUUC-Pan-091775	Papio anubis	96.45	1.00e-174	605.00
IUUC-Psi-092966	Pelodiscus sinensis	82.51	7.00e-125	440.00
IUUC-Ppa-095313	Physcomitrella patens	35.35	4.00e-14	73.90
IUUC-Pfo-096103	Poecilia formosa	66.28	1.00e-99	355.00
IUUC-Pop-099945	Populus trichocarpa	42.42	6.00e-15	76.30
IUUC-Ppe-101513	Prunus persica	40.40	4.00e-15	76.60
IUUC-Pva-102801	Pteropus vampyrus	90.53	1.00e-158	551.00
IUUC-Sha-107027	Sarcophilus harrisii	93.39	3.00e-150	524.00
IUUC-Sja-107932	Schizosaccharomyces japonicus	50.98	4.00e-12	66.60
IUUC-Spo-108030	Schizosaccharomyces pombe	50.98	4.00e-11	63.20
IUUC-Smo-108847	Selaginella moellendorffii	35.35	2.00e-14	73.90
IUUC-Sit-110501	Setaria italica	34.29	1.00e-15	77.40
IUUC-Sly-111039	Solanum lycopersicum	41.41	7.00e-16	79.30
IUUC-Stu-112006	Solanum tuberosum	37.08	3.00e-11	63.90
IUUC-Sar-113383	Sorex araneus	96.02	2.00e-158	551.00
IUUC-Sbi-113906	Sorghum bicolor	58.33	7.00e-16	77.40
IUUC-Ssc-116357	Sus scrofa	88.89	7.00e-147	513.00
IUUC-Tgu-117345	Taeniopygia guttata	84.38	6.00e-141	493.00
IUUC-Tru-118756	Takifugu rubripes	67.53	4.00e-109	387.00
IUUC-Tni-120104	Tetraodon nigroviridis	68.39	3.00e-101	361.00
IUUC-Tca-121420	Theobroma cacao	37.37	2.00e-14	73.90
IUUC-Vpa-130177	Vicugna pacos	97.30	1.00e-99	355.00
IUUC-Vvi-130983	Vitis vinifera	34.65	4.00e-08	51.20
IUUC-Xtr-132317	Xenopus tropicalis	75.96	7.00e-116	409.00
IUUC-Xma-133967	Xiphophorus maculatus	67.25	1.00e-98	353.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence