iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Dre-027427

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

RAB40c, member RAS oncogene family

Genbank Nucleotide ID

BX470132

Gene Name

rab40c

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSDARG00000061208.4	ENSDART00000087047.4	ENSDARP00000081481.4

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/ECS/SOCS_VHL_BC-box	1.80e-16	60.6	180	227

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/ECS/SOCS_VHL_BC-box

   S: 1    lsklwllrseprSLqhLCRlaIrrclgsqrlkaidkLPLPksLkdYLlyedy 52
           ++k+w ++++++SLq+LC++aI++c++ + +   dkLPLP ++k++L+++++
   Q: 180  MEKFW-RPNRVFSLQDLCCRAIVSCTPVHLI---DKLPLPVAIKSHLKSFSM 227
           67899.**********************888...***************976 PP

Organism

Danio rerio

Protein Sequence
(Fasta)

MGTQGSPVKS YDYLLKFLLV GDSDVGKGEI LDSLQDGSAE SPYAYSSGID YKTTTILLDG 60
RRVKLELWDT SGQGRFCTIF RSYSRGAQGI LLVYDITNRW SFDGIDRWIR EIDEHAPGVP 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AAGCTCGTTT GAAACAATGT AAACAACCCA ACTGTAGCTG TTCGCAATCC ATTGATGTAT 60
TTATACACCC TATGATTCAT ATTGTTTTAC AACATTGAGC TCGGAGGACT GAACACAGCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR027417--P-loop_NTPase
IPR005225--Small_GTP-bd_dom
IPR001806--Small_GTPase
IPR001496--SOCS_box

PROSITE

PS50225--SOCS

Pfam

PF00071--Ras
PF07525--SOCS_box

SMART

SM00253--SOCS
SM00969--SOCS_box

Gene Ontology

GO:0005768--C:endosome
GO:0005886--C:plasma membrane
GO:0008021--C:synaptic vesicle
GO:0005525--F:GTP binding
GO:0072659--P:protein localization to plasma membrane
GO:0009306--P:protein secretion
GO:0016567--P:protein ubiquitination
GO:0007264--P:small GTPase mediated signal transduction
GO:0006904--P:vesicle docking involved in exocytosis

KEGG

dre:678600

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001616	Ailuropoda melanoleuca	92.57	2.00e-140	491.00
IUUC-Apl-003799	Anas platyrhynchos	90.12	1.00e-129	455.00
IUUC-Ame-011203	Astyanax mexicanus	99.28	7.00e-166	575.00
IUUC-Bta-013490	Bos taurus	92.88	2.00e-146	511.00
IUUC-Cja-019990	Callithrix jacchus	92.20	1.00e-144	505.00
IUUC-Cpo-022437	Cavia porcellus	92.28	1.00e-138	485.00
IUUC-Csa-024147	Chlorocebus sabaeus	92.53	4.00e-146	510.00
IUUC-Cho-024716	Choloepus hoffmanni	76.97	7.00e-77	279.00
IUUC-Dno-029998	Dasypus novemcinctus	88.98	1.00e-113	405.00
IUUC-Dor-030584	Dipodomys ordii	82.40	6.00e-106	376.00
IUUC-Dme-031810	Drosophila melanogaster	59.64	7.00e-95	339.00
IUUC-Ete-033080	Echinops telfairi	91.46	2.00e-138	484.00
IUUC-Eca-033423	Equus caballus	92.34	2.00e-123	434.00
IUUC-Eeu-034590	Erinaceus europaeus	86.21	2.00e-109	388.00
IUUC-Fca-035697	Felis catus	92.74	3.00e-120	424.00
IUUC-Fal-037070	Ficedula albicollis	92.17	1.00e-146	511.00
IUUC-Gmo-039605	Gadus morhua	95.70	3.00e-162	563.00
IUUC-Gga-040343	Gallus gallus	92.17	1.00e-146	511.00
IUUC-Gac-041833	Gasterosteus aculeatus	90.56	2.00e-148	518.00
IUUC-Ggo-045131	Gorilla gorilla	85.05	1.00e-128	452.00
IUUC-Hsa-046237	Homo sapiens	92.53	4.00e-146	510.00
IUUC-Itr-048902	Ictidomys tridecemlineatus	92.17	2.00e-146	511.00
IUUC-Lch-050193	Latimeria chalumnae	95.34	8.00e-161	559.00
IUUC-Loc-052243	Lepisosteus oculatus	99.64	2.00e-167	581.00
IUUC-Laf-054435	Loxodonta africana	91.10	3.00e-145	507.00
IUUC-Mcc-055337	Macaca mulatta	92.17	6.00e-145	506.00
IUUC-Meu-056731	Macropus eugenii	89.22	4.00e-77	281.00
IUUC-Mmr-061380	Microcebus murinus	92.47	2.00e-145	508.00
IUUC-Mdo-062438	Monodelphis domestica	91.46	1.00e-145	508.00
IUUC-Mmu-064046	Mus musculus	92.53	2.00e-146	511.00
IUUC-Mpu-066029	Mustela putorius furo	91.56	7.00e-123	432.00
IUUC-Mlu-067741	Myotis lucifugus	92.53	6.00e-146	509.00
IUUC-Nle-069240	Nomascus leucogenys	86.48	5.00e-133	466.00
IUUC-Ont-071248	Oreochromis niloticus	98.92	2.00e-166	577.00
IUUC-Oan-073432	Ornithorhynchus anatinus	91.49	6.00e-119	419.00
IUUC-Ola-086486	Oryzias latipes	87.76	6.00e-147	513.00
IUUC-Oga-088293	Otolemur garnettii	92.53	2.00e-146	511.00
IUUC-Ptr-090720	Pan troglodytes	92.53	4.00e-146	510.00
IUUC-Pan-091732	Papio anubis	92.53	4.00e-146	510.00
IUUC-Psi-093627	Pelodiscus sinensis	91.10	1.00e-138	485.00
IUUC-Pma-094679	Petromyzon marinus	78.48	5.00e-112	396.00
IUUC-Pfo-097105	Poecilia formosa	97.85	5.00e-165	573.00
IUUC-Pab-098054	Pongo abelii	92.53	4.00e-146	510.00
IUUC-Pca-100775	Procavia capensis	90.16	4.00e-86	310.00
IUUC-Pva-102658	Pteropus vampyrus	92.17	3.00e-145	507.00
IUUC-Rno-105303	Rattus norvegicus	92.53	2.00e-146	511.00
IUUC-Sha-106536	Sarcophilus harrisii	91.46	1.00e-145	508.00
IUUC-Tgu-116858	Taeniopygia guttata	96.37	1.00e-110	391.00
IUUC-Tru-118264	Takifugu rubripes	80.84	3.00e-152	530.00
IUUC-Tni-120350	Tetraodon nigroviridis	98.57	7.00e-166	575.00
IUUC-Tbe-127818	Tupaia belangeri	28.25	4.00e-11	61.60
IUUC-Ttr-129236	Tursiops truncatus	93.59	8.00e-148	516.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence