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Tag Content
iUUCD ID IUUC-Dre-027707
Ensembl Protein ID ENSDARP00000023794.8
UniProt Accession G1K2I1; G1K2I1_DANRE
Genbank Protein ID ENSDARP00000023794
Protein Name Lysine-specific demethylase 5B-B
Genbank Nucleotide ID BX664742
Gene Name kdm5bb
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSDARG00000003098.9 ENSDART00000149173.2 ENSDARP00000124652.1
ENSDARG00000003098.9 ENSDART00000150113.2 ENSDARP00000124925.1
ENSDARG00000003098.9 ENSDART00000148765.1 ENSDARP00000124215.1
ENSDARG00000003098.9 ENSDART00000005583.8 ENSDARP00000023794.8
ENSDARG00000003098.9 ENSDART00000108508.3 ENSDARP00000102232.2
Status Unreviewed
Classification
Family E-Value Score Start End
E3 activity/RING/PHD 8.20e-21 74.9 316 362
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 activity/RING/PHD
   S: 3    vClvCgeggedekslveCekCrewfHpaClklsveeelpnsekwiCpkCr 52
           vClvCg+g +++  l+ C+ C++ +H  Cl ++  +++p+ + w CpkC 
   Q: 316  VCLVCGKGNDED-RLLLCDGCDDSYHTFCLIPP-LTDVPKGD-WRCPKCL 362
           8********988.6*******************.*******7.******5 PP
   
Organism Danio rerio
Protein Sequence
(Fasta)
MTQQGPAEFT PPPECPVFEP SWEEFKDPFA FINKIRPIAE KTGICKVRPP PDWQPPFACD 60
VDRLHFTPRI QRLNELEAQT RVKLNFLDQI AKFWDLQGCT LKIPHVERKI LDLYQLNKLV 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Dre-027707|E3,PHD|Danio rerio
Please wait for a moment...
Nucleotide Sequence
(Fasta)
TGTGTATGTG CGCGTGTGTG TGTTGATTGT TCGTGTTGTT CGAGTGTTGC CGGACTCGGG 60
GAGTAACGAA CGGACAGACC GTGTTGCGGA TCCCAGGAAG TTCTGTCTCA GCTTTGCCGA 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Dre-027707|E3,PHD|Danio rerio
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-0479--Metal-binding
KW-0539--Nucleus
KW-1267--Proteomics identification
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger
Interpro

IPR001606--ARID_dom
IPR003347--JmjC_dom
IPR003349--JmjN
IPR013637--Lys_sp_deMease-like_dom
IPR019786--Zinc_finger_PHD-type_CS
IPR004198--Znf_C5HC2
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD
PROSITE

PS51011--ARID
PS51184--JMJC
PS51183--JMJN
PS01359--ZF_PHD_1
PS50016--ZF_PHD_2
Pfam

PF01388--ARID
PF02373--JmjC
PF02375--JmjN
PF00628--PHD
PF08429--PLU-1
PF02928--zf-C5HC2
SMART

SM00501--BRIGHT
SM00558--JmjC
SM00545--JmjN
SM00249--PHD
Gene Ontology

GO:0005634--C:nucleus
GO:0003677--F:DNA binding
GO:0016706--F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors
GO:0008270--F:zinc ion binding
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000552 Aegilops tauschii 32.19 6.00e-96 346.00
IUUC-Aml-001963 Ailuropoda melanoleuca 61.18 0.00e+00 1768.00
IUUC-Apl-003770 Anas platyrhynchos 66.22 0.00e+00 1670.00
IUUC-Aca-004867 Anolis carolinensis 61.26 0.00e+00 1845.00
IUUC-Aly-006097 Arabidopsis lyrata 31.46 2.00e-09 59.70
IUUC-Afu-008796 Aspergillus fumigatus 30.74 6.00e-114 406.00
IUUC-Ani-009139 Aspergillus nidulans 32.38 9.00e-106 379.00
IUUC-Ame-010620 Astyanax mexicanus 75.82 0.00e+00 2315.00
IUUC-Bta-012733 Bos taurus 60.03 0.00e+00 1764.00
IUUC-Cja-019050 Callithrix jacchus 61.21 0.00e+00 1833.00
IUUC-Cfa-021015 Canis familiaris 60.68 0.00e+00 1761.00
IUUC-Cpo-022340 Cavia porcellus 60.45 0.00e+00 1756.00
IUUC-Csa-023441 Chlorocebus sabaeus 61.03 0.00e+00 1831.00
IUUC-Cho-024823 Choloepus hoffmanni 73.13 0.00e+00 1312.00
IUUC-Dno-028978 Dasypus novemcinctus 61.00 0.00e+00 1827.00
IUUC-Dor-030854 Dipodomys ordii 53.06 0.00e+00 1184.00
IUUC-Ete-032760 Echinops telfairi 58.37 0.00e+00 1170.00
IUUC-Eca-034370 Equus caballus 60.65 0.00e+00 1728.00
IUUC-Fca-035494 Felis catus 60.78 0.00e+00 1769.00
IUUC-Fal-037631 Ficedula albicollis 60.83 0.00e+00 1751.00
IUUC-Gmo-039522 Gadus morhua 63.55 0.00e+00 1849.00
IUUC-Gga-040802 Gallus gallus 62.28 0.00e+00 1809.00
IUUC-Gac-041563 Gasterosteus aculeatus 65.87 0.00e+00 1974.00
IUUC-Ggo-044856 Gorilla gorilla 48.95 0.00e+00 1296.00
IUUC-Hsa-045888 Homo sapiens 59.84 0.00e+00 1834.00
IUUC-Hvu-047583 Hordeum vulgare 41.77 4.00e-15 77.40
IUUC-Itr-048297 Ictidomys tridecemlineatus 61.22 0.00e+00 1834.00
IUUC-Lch-050483 Latimeria chalumnae 56.60 0.00e+00 1673.00
IUUC-Loc-052550 Lepisosteus oculatus 70.13 0.00e+00 2062.00
IUUC-Laf-053761 Loxodonta africana 59.46 0.00e+00 1724.00
IUUC-Mcc-055505 Macaca mulatta 59.84 0.00e+00 1835.00
IUUC-Mtr-058113 Medicago truncatula 29.41 4.00e-93 337.00
IUUC-Mga-059358 Meleagris gallopavo 60.99 0.00e+00 1762.00
IUUC-Mmr-060863 Microcebus murinus 60.48 0.00e+00 1802.00
IUUC-Mdo-061957 Monodelphis domestica 62.57 0.00e+00 1894.00
IUUC-Mmu-063944 Mus musculus 60.81 0.00e+00 1805.00
IUUC-Mpu-066719 Mustela putorius furo 64.76 0.00e+00 1768.00
IUUC-Mlu-067366 Myotis lucifugus 59.82 0.00e+00 1740.00
IUUC-Nle-069256 Nomascus leucogenys 58.88 0.00e+00 1794.00
IUUC-Ont-071756 Oreochromis niloticus 67.26 0.00e+00 2030.00
IUUC-Oan-073568 Ornithorhynchus anatinus 60.93 0.00e+00 1852.00
IUUC-Ocu-073961 Oryctolagus cuniculus 61.42 0.00e+00 1826.00
IUUC-Ogl-077886 Oryza glaberrima 36.79 8.00e-17 83.20
IUUC-Olo-080668 Oryza longistaminata 39.81 2.00e-16 82.40
IUUC-Osa-085487 Oryza sativa 36.79 7.00e-17 83.20
IUUC-Ola-086448 Oryzias latipes 64.75 0.00e+00 1937.00
IUUC-Oga-088501 Otolemur garnettii 56.33 0.00e+00 1428.00
IUUC-Oar-090162 Ovis aries 59.96 0.00e+00 1761.00
IUUC-Ptr-090816 Pan troglodytes 59.90 0.00e+00 1841.00
IUUC-Pan-092764 Papio anubis 61.09 0.00e+00 1832.00
IUUC-Psi-093918 Pelodiscus sinensis 59.28 0.00e+00 1560.00
IUUC-Pfo-096672 Poecilia formosa 67.09 0.00e+00 1985.00
IUUC-Pab-097854 Pongo abelii 64.14 0.00e+00 1546.00
IUUC-Pca-100241 Procavia capensis 52.43 0.00e+00 1006.00
IUUC-Pva-103035 Pteropus vampyrus 60.12 0.00e+00 1561.00
IUUC-Pgr-103434 Puccinia graminis 30.74 2.00e-29 123.00
IUUC-Rno-105574 Rattus norvegicus 61.02 0.00e+00 1786.00
IUUC-Sja-107734 Schizosaccharomyces japonicus 21.57 2.00e-35 145.00
IUUC-Sar-113477 Sorex araneus 62.32 0.00e+00 1659.00
IUUC-Ssc-116132 Sus scrofa 66.61 0.00e+00 1709.00
IUUC-Tgu-117452 Taeniopygia guttata 60.72 0.00e+00 1758.00
IUUC-Tru-117561 Takifugu rubripes 59.24 0.00e+00 1737.00
IUUC-Tsy-119271 Tarsius syrichta 63.21 0.00e+00 1299.00
IUUC-Tur-126632 Triticum urartu 32.19 2.00e-96 348.00
IUUC-Tme-127087 Tuber melanosporum 30.62 2.00e-121 431.00
IUUC-Tbe-127890 Tupaia belangeri 48.00 0.00e+00 799.00
IUUC-Ttr-128546 Tursiops truncatus 63.38 0.00e+00 1437.00
IUUC-Xtr-132008 Xenopus tropicalis 60.88 0.00e+00 1772.00
Created Date 25-Jun-2017

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