iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ata-000873

Ensembl Protein ID

EMT29620

UniProt Accession

M8BX96; M8BX96_AEGTA

Genbank Protein ID

EMT29620.1

Protein Name

Katanin p80 WD40 repeat-containing subunit B1 homolog

Genbank Nucleotide ID

KD507017

Gene Name

F775_12395

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
F775_12395	EMT29620	EMT29620

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.10e-33	113.6	197	232
UBD/Beta-Prp	1.80e-47	162.7	41	262

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvl 35
           H+++++cl+f +   ll++Gs D+t+k WDl t+ l
   Q: 197  HEGPINCLDFhPHeFLLATGSADKTVKFWDLETFEL 232
           9*********9776789**************99876 PP

UBD/Beta-Prp

   S: 9    hksvitcvkf.spdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgdk 108
           h s +tc kf ++ ++ l+tg++d              +slsgh+++v +++f++++ ++  g+  +tik+wd++  k v+t++gh ++  sl+++p g++
   Q: 41   HASDVTCAKFgKRTSRTLITGGED-------------QKSLSGHTSPVESLSFDSSEVMIGAGAATGTIKIWDIKEAKVVRTFTGHRSNCASLDSHPFGEF 128
           555566677766666777777633.............4689***************9888888889*********************************** PP
   S: 109  lvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvklwdl 209
           ++sGs+d   ++wd++++ c++ t +gh+g + ++++ pdg+ +vsG++D+ v++Wdl  gkll++++  h++++++l+f++  + l++gs d+tvk+wdl
   Q: 129  FASGSSDTNMKIWDMRKKRCIH-TYQGHTGRIDVLRFTPDGRWIVSGGADSSVKIWDLTAGKLLHDFRL-HEGPINCLDFHPHEFLLATGSADKTVKFWDL 227
           **********************.*********************************************8.******************************* PP
   S: 210  qtgecvrtlnghtdnvksvrfspnderlvsgssDg 244
           +t e + +     + v+s+ f ++++ l +g +++
   Q: 228  ETFELIGSSGPEASVVRSMTFNSDGKALFCGLHEN 262
           ****************************9997554 PP

Organism

Aegilops tauschii

Functional Description
(View)

May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.

Protein Sequence
(Fasta)

MVEVTSEPHS IVVKLRGIVG SLQSSCGDSP NLVCKEEFVA HASDVTCAKF GKRTSRTLIT 60
GGEDQKSLSG HTSPVESLSF DSSEVMIGAG AATGTIKIWD IKEAKVVRTF TGHRSNCASL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGTTGAGG TCACCTCGGA GCCACATTCC ATTGTGGTGA AGCTCCGTGG TATCGTTGGG 60
AGCCTCCAAT CAAGCTGTGG AGATAGCCCC AACCTTGTTT GTAAAGGTTC GGTCGCCGCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-0493--Microtubule
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR026962--Katanin_bsu1
IPR028021--Katanin_C-terminal
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF13925--Katanin_con80
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0008352--C:katanin complex
GO:0005874--C:microtubule
GO:0051013--P:microtubule severing

KEGG

ats:F775_12395

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002899	Amborella trichopoda	41.94	2.00e-165	575.00
IUUC-Bdi-014552	Brachypodium distachyon	68.35	0.00e+00	1067.00
IUUC-Gma-044134	Glycine max	40.87	9.00e-156	543.00
IUUC-Hvu-047781	Hordeum vulgare	80.34	0.00e+00	1310.00
IUUC-Lpe-051597	Leersia perrieri	65.35	1.00e-178	619.00
IUUC-Mga-059608	Meleagris gallopavo	47.06	4.00e-83	301.00
IUUC-Oba-075845	Oryza barthii	55.53	0.00e+00	857.00
IUUC-Obr-076798	Oryza brachyantha	56.10	0.00e+00	904.00
IUUC-Ogu-079022	Oryza glumaepatula	56.65	0.00e+00	901.00
IUUC-Oin-080135	Oryza indica	57.21	0.00e+00	905.00
IUUC-Olo-080665	Oryza longistaminata	60.86	0.00e+00	821.00
IUUC-Ome-081884	Oryza meridionalis	57.16	0.00e+00	904.00
IUUC-Oni-082726	Oryza nivara	55.53	0.00e+00	856.00
IUUC-Opu-083637	Oryza punctata	57.05	0.00e+00	917.00
IUUC-Oru-085123	Oryza rufipogon	57.09	0.00e+00	902.00
IUUC-Osa-086267	Oryza sativa	57.09	0.00e+00	902.00
IUUC-Sit-109837	Setaria italica	52.04	0.00e+00	794.00
IUUC-Sly-111307	Solanum lycopersicum	42.10	3.00e-157	548.00
IUUC-Sar-112953	Sorex araneus	42.11	2.00e-53	202.00
IUUC-Tgu-117461	Taeniopygia guttata	47.42	1.00e-84	306.00
IUUC-Tae-123176	Triticum aestivum	83.91	0.00e+00	1315.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence