iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein-protein Interaction
iRefIndex	PINA	HINT	Mentha
Protein 3D Structure
PDB	MMDB
Post-translational Modifications (PTMs)
dbPPT
Protein Expression/Proteomics
GPMDB

Status

Reviewed

Details

Family	Domain	References (PMIDs)
UBD/Alpha-Helix/UBA	UBA	16895613

Classification

Family	E-value	Score	Start	End
UBD/Alpha-Helix/UBA	2.40e-07	31.5	386	423

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

UBD/Alpha-Helix/UBA

   S: 3    dedkleqlveMGFdreealqaLraannnleaAveyLld 40
           +e+++++lv+MGFdr ++  aL+aa+ +l +Ave L++
   Q: 386  SEEQIQKLVAMGFDRTQVEVALAAADDDLTVAVEILMS 423
           79**********************************97 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Probable rhomboid-type serine protease that catalyzes intramembrane proteolysis. May function in senescence.

Protein Sequence
(Fasta)

MTYGISSSQK IIQSLRSREE SFTVGEKREL FAGVQTRVGQ WWNAIPFLTS SVVVVCGVIY 60
LICLLTGYDT FYEVCFLPSA IISRFQVYRF YTAIIFHGSL LHVLFNMMAL VPMGSELERI 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ACATTATTAT CAAAATCTCA ACATATTTAC CAAAATGATT TATTGCATCA TGAATCAACA 60
TGACATACGG AATTAGCTCA TCACAAAAAA TTATTCAATC CGTTGCAACT TTATAATTTG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0002--3D-structure
KW-0025--Alternative splicing
KW-0181--Complete proteome
KW-0378--Hydrolase
KW-0472--Membrane
KW-0645--Protease
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix

Interpro

IPR022764--Peptidase_S54_rhomboid_dom
IPR015940--UBA
IPR009060--UBA-like

PROSITE

PS50030--UBA

Pfam

PF01694--Rhomboid
PF00627--UBA

SMART

SM00165--UBA

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0004252--F:serine-type endopeptidase activity

KEGG

ath:AT3G58460

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-003104	Amborella trichopoda	60.05	9.00e-140	489.00
IUUC-Aca-004494	Anolis carolinensis	35.71	3.00e-03	35.40
IUUC-Aly-006262	Arabidopsis lyrata	97.46	0.00e+00	716.00
IUUC-Afl-008583	Aspergillus flavus	26.98	8.00e-07	46.60
IUUC-Bgr-012264	Blumeria graminis	24.55	4.00e-09	54.30
IUUC-Bci-013845	Botrytis cinerea	25.19	2.00e-09	55.80
IUUC-Bdi-014166	Brachypodium distachyon	58.56	1.00e-128	451.00
IUUC-Bol-015488	Brassica oleracea	88.38	0.00e+00	713.00
IUUC-Bra-017302	Brassica rapa	91.23	0.00e+00	710.00
IUUC-Cre-022648	Chlamydomonas reinhardtii	40.34	9.00e-38	150.00
IUUC-Cme-027293	Cyanidioschyzon merolae	26.96	1.00e-16	80.50
IUUC-Dse-031546	Dothistroma septosporum	26.04	6.00e-08	50.10
IUUC-Fox-037841	Fusarium oxysporum	29.36	2.00e-06	45.10
IUUC-Fso-038300	Fusarium solani	28.66	8.00e-10	56.20
IUUC-Gma-043194	Glycine max	70.10	2.00e-155	540.00
IUUC-Hvu-047778	Hordeum vulgare	57.86	4.00e-126	444.00
IUUC-Itr-048333	Ictidomys tridecemlineatus	23.97	2.00e-04	38.90
IUUC-Lch-049560	Latimeria chalumnae	31.31	2.00e-05	42.40
IUUC-Lpe-051525	Leersia perrieri	59.50	7.00e-137	479.00
IUUC-Mtr-058025	Medicago truncatula	67.76	3.00e-154	536.00
IUUC-Mac-064802	Musa acuminata	59.25	2.00e-133	468.00
IUUC-Oba-075871	Oryza barthii	55.72	1.00e-114	405.00
IUUC-Obr-076568	Oryza brachyantha	59.50	2.00e-137	481.00
IUUC-Ogl-077534	Oryza glaberrima	58.21	1.00e-124	438.00
IUUC-Ogu-078204	Oryza glumaepatula	55.47	2.00e-114	405.00
IUUC-Oin-079209	Oryza indica	58.21	1.00e-124	438.00
IUUC-Olo-080827	Oryza longistaminata	43.19	7.00e-35	139.00
IUUC-Oni-082642	Oryza nivara	51.00	4.00e-98	350.00
IUUC-Opu-083685	Oryza punctata	51.12	2.00e-105	375.00
IUUC-Oru-085021	Oryza rufipogon	51.00	4.00e-98	350.00
IUUC-Osa-086297	Oryza sativa	58.21	1.00e-124	438.00
IUUC-Olu-087599	Ostreococcus lucimarinus	31.15	3.00e-26	111.00
IUUC-Pno-095121	Phaeosphaeria nodorum	24.07	2.00e-07	48.10
IUUC-Ppa-095438	Physcomitrella patens	45.63	1.00e-97	349.00
IUUC-Pop-099200	Populus trichocarpa	69.48	1.00e-156	545.00
IUUC-Ppe-101907	Prunus persica	67.08	4.00e-159	553.00
IUUC-Sha-107118	Sarcophilus harrisii	35.48	5.20e-01	27.30
IUUC-Sja-107839	Schizosaccharomyces japonicus	26.67	3.00e-05	41.60
IUUC-Ssl-108652	Sclerotinia sclerotiorum	25.37	2.00e-09	55.50
IUUC-Smo-109221	Selaginella moellendorffii	47.07	3.00e-84	304.00
IUUC-Sit-110586	Setaria italica	60.35	2.00e-137	481.00
IUUC-Sly-111682	Solanum lycopersicum	65.02	3.00e-142	497.00
IUUC-Stu-112146	Solanum tuberosum	65.10	2.00e-140	491.00
IUUC-Sbi-114385	Sorghum bicolor	60.20	4.00e-138	483.00
IUUC-Ssc-115544	Sus scrofa	27.49	6.00e-10	57.40
IUUC-Tca-120985	Theobroma cacao	66.58	2.00e-160	557.00
IUUC-Tvi-122530	Trichoderma virens	27.54	8.00e-09	53.50
IUUC-Tae-125293	Triticum aestivum	58.85	8.00e-128	449.00
IUUC-Tur-126741	Triticum urartu	67.46	4.00e-70	257.00
IUUC-Ttr-128782	Tursiops truncatus	26.62	2.00e-10	59.70
IUUC-Vvi-131200	Vitis vinifera	66.09	2.00e-146	511.00
IUUC-Yli-134620	Yarrowia lipolytica	25.86	2.00e-11	62.40

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence