iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-098988

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CM000341

Gene Name

POPTR_0005s12910g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0005s12910	POPTR_0005s12910.1	POPTR_0005s12910.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/U-box	1.60e-06	29.2	28	83
E3 activity/RING/RING	6.30e-06	27.7	31	72

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/U-box

   S: 5    eflCpIslelMrdPvvlpsGitydrssIekwlasggk..tcPvtrqplteedlvPn 58
           +f C I +el +dP v+ +G+ +   ++ +wl +  +  +cPv+++ ++ee+lvP 
   Q: 28   DFECNICFELAQDPIVTLCGHLFCWPCLYRWLHHHSHshECPVCKAIIQEEKLVPL 83
           699*****************************55444469**************96 PP

E3 activity/RING/RING

   S: 1    CaiCledfkdgplvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           C iC+e  +d p+v+ CgH+f+  Cl++w +++   s +  CP+C+
   Q: 31   CNICFELAQD-PIVTLCGHLFCWPCLYRW-LHH--HSHSHECPVCK 72
           99********.999***************.555..788889****7 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MESGYEESTS VRLESSSFSS NNGTDAGDFE CNICFELAQD PIVTLCGHLF CWPCLYRWLH 60
HHSHSHECPV CKAIIQEEKL VPLYGRGKTQ ADPRSKSYPG IDIPTRPSGQ RPETAPPPDA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AGCCACATCC ATCCAGAATC TTCCTGTTGA ACTTTTCTTC TTTATTTTCC ATTTTAATAA 60
TAAAATAGTA TTAACTATTA AAGACTCCTC ATTCTCATTC TCCAGCAAAG AAAAGAAAAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD
IPR017907--Znf_RING_CS

PROSITE

PS00518--ZF_RING_1
PS50089--ZF_RING_2

SMART

SM00184--RING

Gene Ontology

GO:0036513--C:Derlin-1 retrotranslocation complex
GO:0016021--C:integral component of membrane
GO:1904264--F:ubiquitin protein ligase activity involved in ERAD pathway
GO:0044390--F:ubiquitin-like protein conjugating enzyme binding
GO:0008270--F:zinc ion binding
GO:0071712--P:ER-associated misfolded protein catabolic process
GO:0042787--P:protein ubiquitination involved in ubiquitin-dependent protein catabolic process

KEGG

pop:POPTR_0005s12910g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-005785	Arabidopsis lyrata	61.46	2.00e-60	224.00
IUUC-Ath-007401	Arabidopsis thaliana	58.02	2.00e-55	207.00
IUUC-Bol-016132	Brassica oleracea	58.72	1.00e-69	255.00
IUUC-Bra-017631	Brassica rapa	57.32	5.00e-69	253.00
IUUC-Csa-023755	Chlorocebus sabaeus	58.57	5.00e-23	100.00
IUUC-Cme-027164	Cyanidioschyzon merolae	55.38	3.00e-21	95.10
IUUC-Ete-032786	Echinops telfairi	58.57	5.00e-23	100.00
IUUC-Eeu-034614	Erinaceus europaeus	48.57	2.00e-15	75.10
IUUC-Gmo-039369	Gadus morhua	50.67	5.00e-22	96.30
IUUC-Gga-040514	Gallus gallus	58.57	9.00e-23	99.40
IUUC-Gma-043248	Glycine max	67.39	1.00e-83	301.00
IUUC-Laf-054438	Loxodonta africana	58.57	5.00e-23	100.00
IUUC-Mpo-057431	Magnaporthe poae	41.07	2.00e-09	56.60
IUUC-Mtr-058107	Medicago truncatula	61.84	2.00e-71	261.00
IUUC-Mga-059554	Meleagris gallopavo	58.57	9.00e-23	99.40
IUUC-Mpu-066033	Mustela putorius furo	58.57	5.00e-23	103.00
IUUC-Pan-092671	Papio anubis	58.57	5.00e-23	100.00
IUUC-Ppe-102011	Prunus persica	70.48	2.00e-89	321.00
IUUC-Rno-105293	Rattus norvegicus	58.57	4.00e-23	100.00
IUUC-Sha-107361	Sarcophilus harrisii	58.57	5.00e-23	100.00
IUUC-Tni-120909	Tetraodon nigroviridis	52.50	6.00e-24	103.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence