iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Psi-093755

Ensembl Protein ID

ENSPSIP00000010461.1

UniProt Accession

K7FR01; K7FR01_PELSI

Genbank Protein ID

ENSPSIP00000010461

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

AGCU01148503

Gene Name

UPF1

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSPSIG00000009491.1	ENSPSIT00000010514.1	ENSPSIP00000010461.1

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
E3 activity/Other	57.70	0.00e+00	673.00	IUUC-Sce-106206

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Pelodiscus sinensis

Protein Sequence
(Fasta)

MRLMQGDEIC LRYKGDLAPL WKGIGHVIKV PDNYGDEIAI ELRSSVGAPV EVTHNFQVDF 60
VWKSTSFDRM QSALKTFAVD ETSVSGYIYH KLLGHEVEDV IIKCQLPKRF TAQGLPDLNH 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGCGTCTTA TGCAGGGAGA CGAAATCTGC CTGAGATATA AAGGAGACTT GGCCCCTTTG 60
TGGAAAGGAA TTGGTCATGT TATTAAAGTT CCTGATAGTA TCCTTTACTT AATCCCCCCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR006935--Helicase/UvrB_N
IPR027417--P-loop_NTPase

Pfam

PF04851--ResIII

Gene Ontology

GO:0000785--C:chromatin
GO:0035145--C:exon-exon junction complex
GO:0000784--C:nuclear chromosome, telomeric region
GO:0005654--C:nucleoplasm
GO:0044530--C:supraspliceosomal complex
GO:0005524--F:ATP binding
GO:0004004--F:ATP-dependent RNA helicase activity
GO:0003682--F:chromatin binding
GO:0003723--F:RNA binding
GO:0042162--F:telomeric DNA binding
GO:0061158--P:3'-UTR-mediated mRNA destabilization
GO:0071347--P:cellular response to interleukin-1
GO:0071222--P:cellular response to lipopolysaccharide
GO:0006281--P:DNA repair
GO:0009048--P:dosage compensation by inactivation of X chromosome
GO:0071044--P:histone mRNA catabolic process
GO:0000294--P:nuclear-transcribed mRNA catabolic process, endonucleolytic cleavage-dependent decay
GO:0000184--P:nuclear-transcribed mRNA catabolic process, nonsense-mediated decay
GO:0061014--P:positive regulation of mRNA catabolic process
GO:0006449--P:regulation of translational termination
GO:0032201--P:telomere maintenance via semi-conservative replication

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000680	Aegilops tauschii	68.55	0.00e+00	827.00
IUUC-Aml-002008	Ailuropoda melanoleuca	98.04	0.00e+00	1463.00
IUUC-Atr-002632	Amborella trichopoda	71.00	0.00e+00	839.00
IUUC-Apl-003997	Anas platyrhynchos	98.95	0.00e+00	1461.00
IUUC-Aca-004322	Anolis carolinensis	32.39	4.00e-51	196.00
IUUC-Aly-006521	Arabidopsis lyrata	70.58	0.00e+00	828.00
IUUC-Ath-007059	Arabidopsis thaliana	70.23	0.00e+00	827.00
IUUC-Ago-007801	Ashbya gossypii	56.97	0.00e+00	657.00
IUUC-Acl-008312	Aspergillus clavatus	68.13	0.00e+00	823.00
IUUC-Afl-008429	Aspergillus flavus	67.61	0.00e+00	818.00
IUUC-Afu-009092	Aspergillus fumigatus	68.13	0.00e+00	820.00
IUUC-Ani-009317	Aspergillus nidulans	68.13	0.00e+00	822.00
IUUC-Ang-009783	Aspergillus niger	57.16	0.00e+00	821.00
IUUC-Aor-010178	Aspergillus oryzae	67.61	0.00e+00	818.00
IUUC-Ate-010294	Aspergillus terreus	57.73	0.00e+00	825.00
IUUC-Ame-010774	Astyanax mexicanus	71.82	0.00e+00	1041.00
IUUC-Bgr-012293	Blumeria graminis	67.20	0.00e+00	820.00
IUUC-Bta-012382	Bos taurus	98.04	0.00e+00	1462.00
IUUC-Bci-013937	Botrytis cinerea	67.55	0.00e+00	816.00
IUUC-Bdi-014612	Brachypodium distachyon	68.39	0.00e+00	838.00
IUUC-Bol-015145	Brassica oleracea	69.39	0.00e+00	823.00
IUUC-Bra-017370	Brassica rapa	69.01	0.00e+00	807.00
IUUC-Cel-018240	Caenorhabditis elegans	60.87	0.00e+00	700.00
IUUC-Cja-019892	Callithrix jacchus	97.91	0.00e+00	1459.00
IUUC-Cfa-020700	Canis familiaris	98.04	0.00e+00	1462.00
IUUC-Cpo-021510	Cavia porcellus	97.65	0.00e+00	1485.00
IUUC-Cre-022731	Chlamydomonas reinhardtii	60.11	0.00e+00	695.00
IUUC-Csa-023665	Chlorocebus sabaeus	97.91	0.00e+00	1459.00
IUUC-Cin-025798	Ciona intestinalis	83.78	0.00e+00	893.00
IUUC-Csv-025901	Ciona savignyi	72.89	0.00e+00	1098.00
IUUC-Cgl-026653	Colletotrichum gloeosporioides	57.55	0.00e+00	803.00
IUUC-Cne-027014	Cryptococcus neoformans	61.15	0.00e+00	822.00
IUUC-Dre-028705	Danio rerio	93.87	0.00e+00	1424.00
IUUC-Dor-030369	Dipodomys ordii	93.59	0.00e+00	1402.00
IUUC-Dme-031767	Drosophila melanogaster	73.85	0.00e+00	925.00
IUUC-Ete-032800	Echinops telfairi	33.81	2.00e-51	197.00
IUUC-Eca-033840	Equus caballus	97.91	0.00e+00	1457.00
IUUC-Fca-035466	Felis catus	98.04	0.00e+00	1457.00
IUUC-Fal-037548	Ficedula albicollis	98.83	0.00e+00	1437.00
IUUC-Fox-038023	Fusarium oxysporum	57.35	0.00e+00	790.00
IUUC-Gmo-039285	Gadus morhua	92.69	0.00e+00	1390.00
IUUC-Ggr-039810	Gaeumannomyces graminis	66.37	0.00e+00	808.00
IUUC-Gga-040972	Gallus gallus	98.95	0.00e+00	1464.00
IUUC-Gac-042075	Gasterosteus aculeatus	93.22	0.00e+00	1429.00
IUUC-Gma-042713	Glycine max	71.45	0.00e+00	867.00
IUUC-Ggo-045398	Gorilla gorilla	97.91	0.00e+00	1459.00
IUUC-Hsa-046152	Homo sapiens	97.91	0.00e+00	1459.00
IUUC-Hvu-047555	Hordeum vulgare	71.43	1.00e-144	506.00
IUUC-Itr-048247	Ictidomys tridecemlineatus	97.91	0.00e+00	1490.00
IUUC-Kpa-049205	Komagataella pastoris	53.60	2.00e-157	549.00
IUUC-Lch-049587	Latimeria chalumnae	96.70	0.00e+00	1302.00
IUUC-Lpe-051059	Leersia perrieri	71.28	0.00e+00	842.00
IUUC-Loc-051911	Lepisosteus oculatus	94.26	0.00e+00	1407.00
IUUC-Lma-053007	Leptosphaeria maculans	59.40	0.00e+00	808.00
IUUC-Laf-054234	Loxodonta africana	97.25	0.00e+00	1441.00
IUUC-Mcc-054762	Macaca mulatta	97.91	0.00e+00	1459.00
IUUC-Meu-056677	Macropus eugenii	93.92	0.00e+00	880.00
IUUC-Mor-057147	Magnaporthe oryzae	66.31	0.00e+00	806.00
IUUC-Mpo-057314	Magnaporthe poae	66.37	0.00e+00	808.00
IUUC-Mtr-058329	Medicago truncatula	71.63	0.00e+00	867.00
IUUC-Mla-059094	Melampsora laricipopulina	67.78	9.00e-92	330.00
IUUC-Mga-060126	Meleagris gallopavo	98.30	0.00e+00	1444.00
IUUC-Mvi-060373	Microbotryum violaceum	63.79	0.00e+00	862.00
IUUC-Mmr-060628	Microcebus murinus	97.78	0.00e+00	1457.00
IUUC-Mdo-061858	Monodelphis domestica	98.69	0.00e+00	1468.00
IUUC-Mmu-064116	Mus musculus	97.12	0.00e+00	1450.00
IUUC-Mac-065136	Musa acuminata	69.76	0.00e+00	829.00
IUUC-Mpu-066463	Mustela putorius furo	98.04	0.00e+00	1461.00
IUUC-Mlu-068098	Myotis lucifugus	97.78	0.00e+00	1458.00
IUUC-Nfi-068370	Neosartorya fischeri	62.13	0.00e+00	821.00
IUUC-Ncr-068792	Neurospora crassa	59.18	0.00e+00	810.00
IUUC-Nle-070102	Nomascus leucogenys	97.91	0.00e+00	1457.00
IUUC-Opr-070620	Ochotona princeps	92.83	0.00e+00	1367.00
IUUC-Ont-072685	Oreochromis niloticus	93.34	0.00e+00	1399.00
IUUC-Oan-073665	Ornithorhynchus anatinus	97.52	0.00e+00	1420.00
IUUC-Ocu-074154	Oryctolagus cuniculus	32.95	3.00e-53	203.00
IUUC-Oba-075075	Oryza barthii	66.37	0.00e+00	769.00
IUUC-Obr-076183	Oryza brachyantha	63.84	0.00e+00	844.00
IUUC-Ogl-077691	Oryza glaberrima	71.28	0.00e+00	842.00
IUUC-Ogu-078423	Oryza glumaepatula	71.28	0.00e+00	841.00
IUUC-Oin-080107	Oryza indica	71.28	0.00e+00	842.00
IUUC-Olo-080269	Oryza longistaminata	71.28	0.00e+00	841.00
IUUC-Ome-081779	Oryza meridionalis	71.28	0.00e+00	840.00
IUUC-Oni-082366	Oryza nivara	71.28	0.00e+00	841.00
IUUC-Opu-083958	Oryza punctata	71.28	0.00e+00	843.00
IUUC-Oru-084182	Oryza rufipogon	71.28	0.00e+00	840.00
IUUC-Osa-085285	Oryza sativa	71.28	0.00e+00	841.00
IUUC-Ola-086954	Oryzias latipes	93.61	0.00e+00	1407.00
IUUC-Olu-087685	Ostreococcus lucimarinus	61.11	0.00e+00	693.00
IUUC-Oga-088591	Otolemur garnettii	98.04	0.00e+00	1461.00
IUUC-Oar-089417	Ovis aries	97.39	0.00e+00	1371.00
IUUC-Ptr-091510	Pan troglodytes	98.83	0.00e+00	1221.00
IUUC-Pan-091886	Papio anubis	97.91	0.00e+00	1459.00
IUUC-Pma-094470	Petromyzon marinus	87.87	0.00e+00	1296.00
IUUC-Pno-094963	Phaeosphaeria nodorum	66.37	0.00e+00	808.00
IUUC-Ppa-095479	Physcomitrella patens	70.40	0.00e+00	848.00
IUUC-Pfo-097456	Poecilia formosa	93.34	0.00e+00	1409.00
IUUC-Pab-098075	Pongo abelii	88.50	0.00e+00	1271.00
IUUC-Pop-099557	Populus trichocarpa	59.28	0.00e+00	857.00
IUUC-Pca-100717	Procavia capensis	100.00	4.00e-177	615.00
IUUC-Ppe-101675	Prunus persica	57.74	0.00e+00	869.00
IUUC-Pva-103029	Pteropus vampyrus	100.00	0.00e+00	776.00
IUUC-Pgr-103318	Puccinia graminis	63.58	0.00e+00	836.00
IUUC-Ptt-103956	Puccinia triticina	63.37	0.00e+00	836.00
IUUC-Pte-104399	Pyrenophora teres	60.27	0.00e+00	817.00
IUUC-Pyt-104749	Pyrenophora triticirepentis	60.12	0.00e+00	816.00
IUUC-Rno-105784	Rattus norvegicus	97.12	0.00e+00	1484.00
IUUC-Sce-106206	Saccharomyces cerevisiae	57.70	0.00e+00	672.00
IUUC-Sha-106566	Sarcophilus harrisii	98.31	0.00e+00	1464.00
IUUC-Sja-107721	Schizosaccharomyces japonicus	65.14	0.00e+00	769.00
IUUC-Spo-108258	Schizosaccharomyces pombe	61.82	0.00e+00	744.00
IUUC-Ssl-108640	Sclerotinia sclerotiorum	63.62	0.00e+00	696.00
IUUC-Sit-109760	Setaria italica	58.65	0.00e+00	838.00
IUUC-Sly-111807	Solanum lycopersicum	71.63	0.00e+00	870.00
IUUC-Stu-112869	Solanum tuberosum	64.33	0.00e+00	864.00
IUUC-Sar-112950	Sorex araneus	39.22	9.00e-42	165.00
IUUC-Sbi-114863	Sorghum bicolor	70.93	0.00e+00	837.00
IUUC-Sre-115092	Sporisorium reilianum	64.76	0.00e+00	858.00
IUUC-Tgu-117214	Taeniopygia guttata	88.85	0.00e+00	1014.00
IUUC-Tru-118386	Takifugu rubripes	89.51	0.00e+00	1376.00
IUUC-Tsy-119550	Tarsius syrichta	99.61	2.00e-150	526.00
IUUC-Tni-120212	Tetraodon nigroviridis	91.53	0.00e+00	1374.00
IUUC-Tca-121353	Theobroma cacao	71.28	0.00e+00	865.00
IUUC-Tre-122245	Trichoderma reesei	34.94	9.00e-53	202.00
IUUC-Tvi-122452	Trichoderma virens	64.02	0.00e+00	774.00
IUUC-Tae-123692	Triticum aestivum	70.58	0.00e+00	835.00
IUUC-Tur-126770	Triticum urartu	55.87	0.00e+00	726.00
IUUC-Tme-126956	Tuber melanosporum	68.31	0.00e+00	820.00
IUUC-Tbe-127873	Tupaia belangeri	33.26	4.00e-48	186.00
IUUC-Ttr-128212	Tursiops truncatus	98.04	0.00e+00	1463.00
IUUC-Uma-129327	Ustilago maydis	63.67	0.00e+00	848.00
IUUC-Vda-129858	Verticillium dahliae	65.77	0.00e+00	781.00
IUUC-Vpa-130743	Vicugna pacos	33.41	2.00e-49	190.00
IUUC-Vvi-131222	Vitis vinifera	71.10	0.00e+00	841.00
IUUC-Xtr-131800	Xenopus tropicalis	80.45	0.00e+00	1152.00
IUUC-Xma-133216	Xiphophorus maculatus	93.21	0.00e+00	1406.00
IUUC-Yli-134482	Yarrowia lipolytica	55.21	0.00e+00	659.00
IUUC-Zma-134802	Zea mays	70.93	0.00e+00	838.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence