iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Bdi-014328

Ensembl Protein ID

BRADI2G39810.1

UniProt Accession

I1HN64; I1HN64_BRADI

Genbank Protein ID

KQK08127.1

Protein Name

Eukaryotic translation initiation factor 3 subunit F; eIF-3-epsilon

Genbank Nucleotide ID

CM000881

Gene Name

LOC100836953; BRADI_2g39810

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
BRADI2G39810	BRADI2G39810.1	BRADI2G39810.1
BRADI2G39810	BRADI2G39810.2	BRADI2G39810.2

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
DUB/JAMM	39.62	6.00e-47	185.00	IUUC-Hsa-046860

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Brachypodium distachyon

Functional Description
(View)

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.

Protein Sequence
(Fasta)

MAETSARGGA CQALLFPSSS SPSCARVEAL VVFTICDSYV RRPDQADRVI GTLLGSVLPD 60
GTVHVRNAYV VPHSESADQV ALDIEYHHNM YVSHQKVNPK EVIVGWFSTG FGVSGGSTLI 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GCAGAGCTCT TCTCTTCTCT TTCTCTGCCG CCGCCGCCGC TCGTTCCATC ATCCCCTTTG 60
GCTTCGCCGC CGCCCCTCCC TCCCTTCCTT CCCCGGCCGG CAGCAACCAT GGCGGAGACC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0396--Initiation factor
KW-0648--Protein biosynthesis
KW-1185--Reference proteome

Interpro

IPR027531--eIF3f
IPR000555--JAMM/MPN+_dom
IPR024969--Rpn11/EIF3F_C

Pfam

PF01398--JAB
PF13012--MitMem_reg

SMART

SM00232--JAB_MPN

Gene Ontology

GO:0005829--C:cytosol
GO:0016282--C:eukaryotic 43S preinitiation complex
GO:0033290--C:eukaryotic 48S preinitiation complex
GO:0071541--C:eukaryotic translation initiation factor 3 complex, eIF3m
GO:0016020--C:membrane
GO:0005634--C:nucleus
GO:0003743--F:translation initiation factor activity
GO:0031369--F:translation initiation factor binding
GO:0009793--P:embryo development ending in seed dormancy
GO:0001731--P:formation of translation preinitiation complex
GO:0009846--P:pollen germination
GO:0006446--P:regulation of translational initiation
GO:0009744--P:response to sucrose
GO:0006413--P:translational initiation

KEGG

bdi:100836953

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001150	Aegilops tauschii	79.75	1.00e-127	448.00
IUUC-Aml-001527	Ailuropoda melanoleuca	39.62	1.00e-54	206.00
IUUC-Atr-002686	Amborella trichopoda	66.79	2.00e-98	351.00
IUUC-Apl-003977	Anas platyrhynchos	37.67	6.00e-45	172.00
IUUC-Aca-004335	Anolis carolinensis	39.16	1.00e-55	209.00
IUUC-Aly-005945	Arabidopsis lyrata	67.92	3.00e-103	367.00
IUUC-Ath-007045	Arabidopsis thaliana	66.42	1.00e-100	358.00
IUUC-Acl-008365	Aspergillus clavatus	32.49	4.00e-39	154.00
IUUC-Afl-008742	Aspergillus flavus	32.35	4.00e-38	151.00
IUUC-Afu-009030	Aspergillus fumigatus	32.13	1.00e-38	152.00
IUUC-Ani-009212	Aspergillus nidulans	31.65	3.00e-38	151.00
IUUC-Ang-009712	Aspergillus niger	32.49	2.00e-38	152.00
IUUC-Aor-009885	Aspergillus oryzae	33.33	3.00e-39	154.00
IUUC-Ate-010315	Aspergillus terreus	31.77	2.00e-38	152.00
IUUC-Ame-010801	Astyanax mexicanus	49.40	2.00e-19	88.20
IUUC-Bgr-011982	Blumeria graminis	33.82	5.00e-38	150.00
IUUC-Bta-012804	Bos taurus	39.62	2.00e-54	205.00
IUUC-Bci-013891	Botrytis cinerea	32.25	2.00e-30	125.00
IUUC-Bol-015446	Brassica oleracea	66.92	6.00e-104	369.00
IUUC-Bra-016862	Brassica rapa	66.17	1.00e-102	365.00
IUUC-Cel-018171	Caenorhabditis elegans	25.26	3.00e-22	97.80
IUUC-Cja-019335	Callithrix jacchus	39.62	2.00e-54	205.00
IUUC-Cfa-020138	Canis familiaris	39.25	4.00e-54	204.00
IUUC-Cpo-022109	Cavia porcellus	35.66	3.00e-43	168.00
IUUC-Cre-022664	Chlamydomonas reinhardtii	43.75	1.00e-61	228.00
IUUC-Csa-023994	Chlorocebus sabaeus	39.62	2.00e-54	205.00
IUUC-Cho-024351	Choloepus hoffmanni	29.43	3.00e-29	121.00
IUUC-Cin-025801	Ciona intestinalis	38.26	3.00e-52	197.00
IUUC-Csv-025805	Ciona savignyi	39.39	8.00e-53	199.00
IUUC-Cgl-026643	Colletotrichum gloeosporioides	28.88	4.00e-31	127.00
IUUC-Cne-026868	Cryptococcus neoformans	29.69	6.00e-20	90.50
IUUC-Cme-027328	Cyanidioschyzon merolae	25.76	2.00e-18	85.90
IUUC-Dre-028085	Danio rerio	39.16	8.00e-54	202.00
IUUC-Dno-030099	Dasypus novemcinctus	39.62	2.00e-54	205.00
IUUC-Dor-030324	Dipodomys ordii	35.47	6.00e-45	173.00
IUUC-Dse-031314	Dothistroma septosporum	33.33	1.00e-38	152.00
IUUC-Dme-031926	Drosophila melanogaster	37.45	4.00e-48	183.00
IUUC-Ete-032569	Echinops telfairi	38.17	3.00e-50	191.00
IUUC-Eca-033502	Equus caballus	38.11	3.00e-50	191.00
IUUC-Eeu-034883	Erinaceus europaeus	32.42	3.00e-25	107.00
IUUC-Fca-035873	Felis catus	39.62	1.00e-54	205.00
IUUC-Fal-036921	Ficedula albicollis	39.62	5.00e-55	206.00
IUUC-Fox-037765	Fusarium oxysporum	29.86	4.00e-26	111.00
IUUC-Fso-038240	Fusarium solani	30.22	8.00e-27	113.00
IUUC-Gmo-038864	Gadus morhua	38.49	6.00e-55	206.00
IUUC-Ggr-039862	Gaeumannomyces graminis	29.19	3.00e-28	118.00
IUUC-Gga-040952	Gallus gallus	39.62	6.00e-55	206.00
IUUC-Gac-041677	Gasterosteus aculeatus	41.51	8.00e-59	219.00
IUUC-Gma-043061	Glycine max	72.93	2.00e-103	367.00
IUUC-Ggo-045591	Gorilla gorilla	39.62	1.00e-54	205.00
IUUC-Hsa-046860	Homo sapiens	39.62	2.00e-54	205.00
IUUC-Hvu-047410	Hordeum vulgare	88.59	5.00e-74	268.00
IUUC-Itr-048211	Ictidomys tridecemlineatus	40.00	4.00e-55	207.00
IUUC-Lch-049410	Latimeria chalumnae	50.00	7.00e-34	136.00
IUUC-Lpe-051102	Leersia perrieri	84.88	9.00e-123	431.00
IUUC-Loc-052016	Lepisosteus oculatus	37.26	8.00e-45	172.00
IUUC-Lma-053157	Leptosphaeria maculans	32.12	8.00e-39	153.00
IUUC-Laf-054568	Loxodonta africana	39.62	3.00e-54	204.00
IUUC-Mcc-054613	Macaca mulatta	39.62	2.00e-54	205.00
IUUC-Meu-056832	Macropus eugenii	22.97	2.00e-16	78.60
IUUC-Mor-057104	Magnaporthe oryzae	26.87	1.00e-27	116.00
IUUC-Mtr-058445	Medicago truncatula	72.18	5.00e-118	416.00
IUUC-Mla-059038	Melampsora laricipopulina	29.47	4.00e-31	127.00
IUUC-Mga-059548	Meleagris gallopavo	38.43	2.00e-47	181.00
IUUC-Mvi-060520	Microbotryum violaceum	26.26	2.00e-17	82.00
IUUC-Mdo-062376	Monodelphis domestica	39.25	3.00e-55	207.00
IUUC-Mmu-063254	Mus musculus	40.00	2.00e-55	208.00
IUUC-Mac-065635	Musa acuminata	68.10	3.00e-106	377.00
IUUC-Mpu-066314	Mustela putorius furo	39.62	1.00e-54	205.00
IUUC-Mlu-067512	Myotis lucifugus	39.54	4.00e-54	204.00
IUUC-Nfi-068262	Neosartorya fischeri	32.13	1.00e-38	153.00
IUUC-Ncr-068872	Neurospora crassa	29.90	8.00e-32	130.00
IUUC-Nle-070118	Nomascus leucogenys	39.62	1.00e-54	206.00
IUUC-Opr-071228	Ochotona princeps	38.43	2.00e-47	181.00
IUUC-Ont-072600	Oreochromis niloticus	39.16	3.00e-57	214.00
IUUC-Oan-073584	Ornithorhynchus anatinus	37.55	4.00e-47	180.00
IUUC-Ocu-074542	Oryctolagus cuniculus	39.62	5.00e-55	207.00
IUUC-Oba-075923	Oryza barthii	85.02	4.00e-126	442.00
IUUC-Obr-076313	Oryza brachyantha	86.82	1.00e-123	435.00
IUUC-Ogl-076932	Oryza glaberrima	85.02	4.00e-126	442.00
IUUC-Ogu-078152	Oryza glumaepatula	85.02	4.00e-126	442.00
IUUC-Oin-079528	Oryza indica	85.02	4.00e-126	442.00
IUUC-Olo-080401	Oryza longistaminata	85.02	4.00e-126	442.00
IUUC-Ome-081553	Oryza meridionalis	84.64	8.00e-126	442.00
IUUC-Oni-082090	Oryza nivara	85.02	3.00e-126	443.00
IUUC-Opu-083583	Oryza punctata	85.66	9.00e-123	431.00
IUUC-Oru-084492	Oryza rufipogon	85.02	4.00e-126	442.00
IUUC-Osa-085383	Oryza sativa	85.02	4.00e-126	442.00
IUUC-Ola-086835	Oryzias latipes	38.52	2.00e-57	214.00
IUUC-Olu-087716	Ostreococcus lucimarinus	33.33	4.00e-36	144.00
IUUC-Oga-088886	Otolemur garnettii	39.25	1.00e-54	206.00
IUUC-Oar-090079	Ovis aries	39.62	2.00e-54	205.00
IUUC-Ptr-091457	Pan troglodytes	39.62	2.00e-54	205.00
IUUC-Pan-092317	Papio anubis	34.78	2.00e-30	124.00
IUUC-Psi-093129	Pelodiscus sinensis	37.07	1.00e-48	186.00
IUUC-Pma-094488	Petromyzon marinus	40.30	5.00e-57	213.00
IUUC-Pno-095049	Phaeosphaeria nodorum	32.85	6.00e-41	160.00
IUUC-Ppa-095341	Physcomitrella patens	55.43	2.00e-93	334.00
IUUC-Pfo-096286	Poecilia formosa	38.78	1.00e-56	212.00
IUUC-Pab-097765	Pongo abelii	39.62	2.00e-54	205.00
IUUC-Pop-099131	Populus trichocarpa	71.05	8.00e-111	392.00
IUUC-Pca-100524	Procavia capensis	31.42	3.00e-30	124.00
IUUC-Ppe-101934	Prunus persica	72.18	1.00e-118	417.00
IUUC-Pva-102577	Pteropus vampyrus	39.62	1.00e-54	206.00
IUUC-Pgr-103521	Puccinia graminis	30.03	7.00e-32	130.00
IUUC-Pte-104304	Pyrenophora teres	33.21	5.00e-41	160.00
IUUC-Pyt-104563	Pyrenophora triticirepentis	33.21	8.00e-41	160.00
IUUC-Rno-105717	Rattus norvegicus	40.00	3.00e-55	207.00
IUUC-Sha-107190	Sarcophilus harrisii	39.46	2.00e-54	204.00
IUUC-Sja-107918	Schizosaccharomyces japonicus	31.65	7.00e-36	143.00
IUUC-Spo-108355	Schizosaccharomyces pombe	33.09	2.00e-38	152.00
IUUC-Smo-109374	Selaginella moellendorffii	60.30	6.00e-100	355.00
IUUC-Sit-110119	Setaria italica	84.53	2.00e-125	440.00
IUUC-Sly-111570	Solanum lycopersicum	70.40	2.00e-100	357.00
IUUC-Stu-112308	Solanum tuberosum	70.76	6.00e-109	385.00
IUUC-Sar-113515	Sorex araneus	34.74	3.00e-12	64.30
IUUC-Sbi-114605	Sorghum bicolor	84.91	1.00e-125	442.00
IUUC-Sre-114906	Sporisorium reilianum	35.34	4.00e-41	160.00
IUUC-Tgu-117087	Taeniopygia guttata	37.99	3.00e-47	180.00
IUUC-Tru-117700	Takifugu rubripes	38.87	3.00e-59	221.00
IUUC-Tni-120470	Tetraodon nigroviridis	38.78	2.00e-56	211.00
IUUC-Tca-121109	Theobroma cacao	73.68	3.00e-105	373.00
IUUC-Tre-122095	Trichoderma reesei	29.75	1.00e-26	112.00
IUUC-Tvi-122580	Trichoderma virens	29.39	7.00e-26	110.00
IUUC-Tae-125129	Triticum aestivum	89.27	8.00e-135	471.00
IUUC-Tur-126658	Triticum urartu	79.04	3.00e-120	423.00
IUUC-Tme-127043	Tuber melanosporum	34.07	1.00e-39	156.00
IUUC-Tbe-127927	Tupaia belangeri	39.62	1.00e-54	205.00
IUUC-Ttr-129231	Tursiops truncatus	39.62	1.00e-54	206.00
IUUC-Uma-129578	Ustilago maydis	35.85	2.00e-40	158.00
IUUC-Vda-129730	Verticillium dahliae	29.96	2.00e-32	132.00
IUUC-Vpa-130677	Vicugna pacos	51.72	2.80e-02	32.00
IUUC-Vvi-130968	Vitis vinifera	70.65	4.00e-110	389.00
IUUC-Xtr-132203	Xenopus tropicalis	38.40	6.00e-52	196.00
IUUC-Xma-133972	Xiphophorus maculatus	38.78	2.00e-56	211.00
IUUC-Yli-134553	Yarrowia lipolytica	31.37	8.00e-34	136.00
IUUC-Zma-134941	Zea mays	83.77	5.00e-115	406.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence