iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Gma-044322

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Katanin p80 WD40 repeat-containing subunit B1 homolog

Genbank Nucleotide ID

CM000838

Gene Name

LOC100799052; GLYMA_05G000600

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
GLYMA05G09341	GLYMA05G09341.1	GLYMA05G09341.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	5.30e-38	129.0	141	179
UBD/Beta-Prp	4.40e-59	201.7	14	262

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
           gHt +v++++f +d + +vsG+ D+t+k+WDl+ g+ll+
   Q: 141  GHTRGVNAIRFtPDgRWVVSGGEDNTVKLWDLTAGKLLH 179
           8***********99999******************9986 PP

UBD/Beta-Prp

   S: 8    hhksvitcvkf.spdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlsl 100
           +h s ++c+k+  +++++l+tg++d+++ +w + +++++ slsgh++++ +v+f++++ + + g+  +tik+wdl+  k+v+tl+ h ++ +s+
   Q: 14   AHASTVNCLKIgRKSSRVLVTGGEDHKVNLWAIGKPNAILSLSGHSSGIDSVSFDSSEVLVAAGAASGTIKLWDLEEAKIVRTLTSHRSNCTSV 107
           78889999***99*********************************************999999999*************************** PP
   S: 101  sfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngke 194
           +f+p g++++sGs d  +++wd++++ c++ t +gh++ vn +++ pdg+ +vsG+ D+tv+lWdl  gkll++++  h+++v++++f++n + 
   Q: 108  DFHPFGEFFASGSLDTNLKIWDIRKKGCIH-TYKGHTRGVNAIRFTPDGRWVVSGGEDNTVKLWDLTAGKLLHDFKC-HEGQVQCIDFHPNEFL 199
           ******************************.********************************************98.**************** PP
   S: 195  lvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllk 258
           l++gs d+tvk+wdl+t e + +    t+ v+s+ fsp++  l++g  ++s++++  +   +  
   Q: 200  LATGSADRTVKFWDLETFELIGSAGPETTGVRSLTFSPDGRTLLCG-LHESLKVFSWEPIRCHD 262
           *************************************999999999.57778876555555544 PP

Organism

Glycine max

Functional Description
(View)

May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.

Protein Sequence
(Fasta)

MTTKRAYKLQ EFVAHASTVN CLKIGRKSSR VLVTGGEDHK VNLWAIGKPN AILSLSGHSS 60
GIDSVSFDSS EVLVAAGAAS GTIKLWDLEE AKIVRTLTSH RSNCTSVDFH PFGEFFASGS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GGTTAATTTG AACATAAGCA TTATCATTAC CGACTACCGA GGGAAACAGT CACACACAAA 60
TCGTGAAAGC GCCTCTCTAC TCTCTTCTCT TCTTTCTTTG TTTGAGCTTT GGGTTTGGGC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-0493--Microtubule
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR026962--Katanin_bsu1
IPR028021--Katanin_C-terminal
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF13925--Katanin_con80
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0008352--C:katanin complex
GO:0005874--C:microtubule
GO:0051013--P:microtubule severing

KEGG

gmx:100784946

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002899	Amborella trichopoda	61.38	0.00e+00	925.00
IUUC-Csv-025962	Ciona savignyi	49.14	4.00e-86	311.00
IUUC-Fca-035924	Felis catus	53.16	8.00e-104	371.00
IUUC-Gac-042004	Gasterosteus aculeatus	53.49	4.00e-101	362.00
IUUC-Mga-059608	Meleagris gallopavo	51.01	2.00e-99	357.00
IUUC-Mpu-066245	Mustela putorius furo	53.49	4.00e-104	372.00
IUUC-Ola-087483	Oryzias latipes	50.00	2.00e-95	343.00
IUUC-Pfo-096755	Poecilia formosa	52.82	8.00e-101	361.00
IUUC-Smo-109409	Selaginella moellendorffii	46.68	0.00e+00	677.00
IUUC-Sit-110360	Setaria italica	76.60	0.00e+00	714.00
IUUC-Sar-112953	Sorex araneus	45.61	4.00e-57	216.00
IUUC-Ssc-115949	Sus scrofa	48.15	2.00e-49	190.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence