iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Sbi-114459

Ensembl Protein ID

Sb04g005370.1

UniProt Accession

C5XWB3; C5XWB3_SORBI

Genbank Protein ID

EES04633.1

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CM000763

Gene Name

SORBI_004G064600

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb04g005370	Sb04g005370.1	Sb04g005370.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
UBD/Alpha-Helix/UBA	2.50e-24	85.5	148	187
ULD/UDP/UBQ/UBQ_PIM	1.60e-22	80.0	1	78

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

UBD/Alpha-Helix/UBA

   S: 5    dkleqlveMG...FdreealqaLraannnleaAveyLldg 41
            +++ql+eMG   +dr+++++aLraa+nn+e+AveyL++g
   Q: 148  TMINQLMEMGggsWDRDKVQRALRAAYNNPERAVEYLYSG 187
           69***********************************986 PP

ULD/UDP/UBQ/UBQ_PIM

   S: 1    mkltvktlkgkefelevseddtveelKekiakesg...vppeqqkLIyaGkiLkDdttLselgikdgsvvhlvvkksk 75
           mkltvktlkg++fe++v+++dt+ ++K++i++ +g   +p  qq LI++Gk+LkD++tL e++++++ +++++++k k
   Q: 1    MKLTVKTLKGTHFEIRVQPNDTIMAVKKNIEEIQGkdsYPWGQQLLIFNGKVLKDESTLDENKVNEDGFLVVMLSKGK 78
           99***********************************************************************99976 PP

Organism

Sorghum bicolor

Protein Sequence
(Fasta)

MKLTVKTLKG THFEIRVQPN DTIMAVKKNI EEIQGKDSYP WGQQLLIFNG KVLKDESTLD 60
ENKVNEDGFL VVMLSKGKTS GSSGTSSSQP SNTPAARQAP PLDAPQQAPQ PPVAPTTTSQ 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTCCGGAGGA GCCTTCCGCG CGACGCTCCA CGGCTCCACC ACCGCTAAAA CCCTAGACGG 60
CTAGCCCGCG CACGGAAGCG GGAGCGGAGC GGAGGCGAGC CTCTCCTGCC TCGGGTTCCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome

Interpro

IPR004806--Rad23
IPR006636--STI1_HS-bd
IPR015940--UBA
IPR009060--UBA-like
IPR029071--Ubiquitin-rel_dom
IPR000626--Ubiquitin_dom
IPR015360--XPC-bd

PROSITE

PS50030--UBA
PS50053--UBIQUITIN_2

Pfam

PF00627--UBA
PF00240--ubiquitin
PF09280--XPC-binding

PRINTS

PR01839--RAD23PROTEIN

SMART

SM00727--STI1
SM00165--UBA
SM00213--UBQ

Gene Ontology

GO:0005634--C:nucleus
GO:0003684--F:damaged DNA binding
GO:0006289--P:nucleotide-excision repair
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

KEGG

sbi:SORBI_04g005370

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000088	Aegilops tauschii	67.86	1.00e-121	429.00
IUUC-Aml-001515	Ailuropoda melanoleuca	38.56	3.00e-32	131.00
IUUC-Atr-002756	Amborella trichopoda	64.89	7.00e-112	395.00
IUUC-Aca-004704	Anolis carolinensis	33.77	3.00e-38	151.00
IUUC-Aly-006159	Arabidopsis lyrata	64.23	8.00e-115	405.00
IUUC-Ath-006674	Arabidopsis thaliana	65.46	4.00e-82	297.00
IUUC-Ago-007830	Ashbya gossypii	30.37	5.00e-14	71.60
IUUC-Acl-008212	Aspergillus clavatus	37.93	9.00e-30	123.00
IUUC-Afu-008877	Aspergillus fumigatus	40.94	3.00e-31	128.00
IUUC-Ani-009460	Aspergillus nidulans	40.00	2.00e-30	125.00
IUUC-Ate-010458	Aspergillus terreus	40.80	5.00e-36	144.00
IUUC-Bgr-012056	Blumeria graminis	34.07	2.00e-28	119.00
IUUC-Bta-012377	Bos taurus	36.40	1.00e-32	133.00
IUUC-Bdi-014355	Brachypodium distachyon	82.11	3.00e-157	546.00
IUUC-Bol-015272	Brassica oleracea	60.81	2.00e-107	381.00
IUUC-Bra-016970	Brassica rapa	62.33	8.00e-111	392.00
IUUC-Cfa-020577	Canis familiaris	37.71	1.00e-32	132.00
IUUC-Cpo-021850	Cavia porcellus	33.17	1.00e-48	186.00
IUUC-Cre-022810	Chlamydomonas reinhardtii	36.29	9.00e-18	83.60
IUUC-Csa-023183	Chlorocebus sabaeus	38.30	1.00e-32	132.00
IUUC-Cin-025741	Ciona intestinalis	27.23	4.00e-20	90.90
IUUC-Csv-025823	Ciona savignyi	28.57	3.00e-25	107.00
IUUC-Cgl-026495	Colletotrichum gloeosporioides	46.08	4.00e-17	81.60
IUUC-Dre-028369	Danio rerio	34.30	2.00e-34	139.00
IUUC-Dme-032027	Drosophila melanogaster	28.44	8.00e-37	147.00
IUUC-Ete-032583	Echinops telfairi	32.85	1.00e-17	83.20
IUUC-Eca-034243	Equus caballus	35.08	8.00e-28	117.00
IUUC-Fca-036051	Felis catus	37.04	8.00e-33	133.00
IUUC-Fal-037148	Ficedula albicollis	34.65	8.00e-26	110.00
IUUC-Fox-037960	Fusarium oxysporum	49.21	7.00e-21	94.00
IUUC-Fso-038107	Fusarium solani	47.58	7.00e-20	90.50
IUUC-Gga-040133	Gallus gallus	37.39	3.00e-24	105.00
IUUC-Gma-044245	Glycine max	63.44	4.00e-124	436.00
IUUC-Ggo-045084	Gorilla gorilla	38.30	2.00e-32	132.00
IUUC-Hsa-046614	Homo sapiens	38.30	1.00e-32	132.00
IUUC-Hvu-047738	Hordeum vulgare	76.66	6.00e-104	369.00
IUUC-Itr-047875	Ictidomys tridecemlineatus	33.25	2.00e-46	178.00
IUUC-Kpa-049314	Komagataella pastoris	29.30	3.00e-32	131.00
IUUC-Lpe-051168	Leersia perrieri	71.00	4.00e-143	499.00
IUUC-Lma-053328	Leptosphaeria maculans	37.84	9.00e-10	53.50
IUUC-Laf-054589	Loxodonta africana	32.72	3.00e-42	165.00
IUUC-Mcc-055860	Macaca mulatta	38.30	1.00e-32	132.00
IUUC-Meu-056459	Macropus eugenii	38.72	3.00e-34	138.00
IUUC-Mor-057287	Magnaporthe oryzae	48.74	2.00e-18	86.30
IUUC-Mtr-058239	Medicago truncatula	62.13	2.00e-111	395.00
IUUC-Mmr-060819	Microcebus murinus	32.58	3.00e-45	174.00
IUUC-Mdo-062742	Monodelphis domestica	33.95	5.00e-48	184.00
IUUC-Mac-064468	Musa acuminata	66.50	1.00e-130	458.00
IUUC-Mpu-066684	Mustela putorius furo	38.56	2.00e-32	132.00
IUUC-Mlu-067787	Myotis lucifugus	32.65	2.00e-43	169.00
IUUC-Nfi-068390	Neosartorya fischeri	40.94	5.00e-31	127.00
IUUC-Nle-069655	Nomascus leucogenys	32.51	2.00e-29	122.00
IUUC-Opr-070234	Ochotona princeps	44.23	2.00e-08	52.40
IUUC-Ont-072484	Oreochromis niloticus	32.41	3.00e-44	171.00
IUUC-Oan-073572	Ornithorhynchus anatinus	33.07	4.00e-43	167.00
IUUC-Ocu-074831	Oryctolagus cuniculus	32.04	7.00e-28	117.00
IUUC-Oba-074972	Oryza barthii	74.25	1.00e-147	514.00
IUUC-Obr-076909	Oryza brachyantha	81.89	5.00e-151	526.00
IUUC-Ogl-077067	Oryza glaberrima	80.00	1.00e-160	558.00
IUUC-Ogu-078023	Oryza glumaepatula	80.72	5.00e-141	493.00
IUUC-Oin-079203	Oryza indica	81.03	1.00e-161	561.00
IUUC-Olo-080559	Oryza longistaminata	77.30	9.00e-153	531.00
IUUC-Oni-082812	Oryza nivara	74.25	2.00e-147	514.00
IUUC-Opu-083963	Oryza punctata	77.51	1.00e-140	491.00
IUUC-Oru-084942	Oryza rufipogon	72.91	2.00e-134	471.00
IUUC-Osa-085951	Oryza sativa	81.30	1.00e-161	561.00
IUUC-Ola-086540	Oryzias latipes	36.08	5.00e-31	127.00
IUUC-Oga-089075	Otolemur garnettii	32.55	4.00e-42	164.00
IUUC-Oar-090387	Ovis aries	36.13	8.00e-31	127.00
IUUC-Ptr-090912	Pan troglodytes	38.30	2.00e-32	132.00
IUUC-Pan-092140	Papio anubis	38.30	1.00e-32	132.00
IUUC-Pfo-097385	Poecilia formosa	38.37	1.00e-34	139.00
IUUC-Pab-097738	Pongo abelii	32.60	9.00e-38	149.00
IUUC-Pop-100054	Populus trichocarpa	59.52	4.00e-110	390.00
IUUC-Pca-100348	Procavia capensis	37.45	1.00e-32	132.00
IUUC-Ppe-101522	Prunus persica	64.08	1.00e-120	425.00
IUUC-Pva-102412	Pteropus vampyrus	38.14	8.00e-33	133.00
IUUC-Sha-106918	Sarcophilus harrisii	34.32	2.00e-39	155.00
IUUC-Sja-107851	Schizosaccharomyces japonicus	32.67	4.00e-42	164.00
IUUC-Spo-108298	Schizosaccharomyces pombe	31.85	7.00e-39	153.00
IUUC-Smo-109518	Selaginella moellendorffii	52.11	2.00e-83	301.00
IUUC-Sit-109813	Setaria italica	85.14	7.00e-158	548.00
IUUC-Sly-111349	Solanum lycopersicum	65.58	1.00e-117	415.00
IUUC-Stu-112306	Solanum tuberosum	64.59	2.00e-111	394.00
IUUC-Sar-112925	Sorex araneus	30.96	2.00e-23	102.00
IUUC-Ssc-115460	Sus scrofa	37.82	7.00e-33	134.00
IUUC-Tgu-116918	Taeniopygia guttata	33.46	3.00e-26	111.00
IUUC-Tru-118651	Takifugu rubripes	33.74	2.00e-31	128.00
IUUC-Tca-121594	Theobroma cacao	63.88	1.00e-117	415.00
IUUC-Tvi-122617	Trichoderma virens	35.34	1.00e-35	143.00
IUUC-Tae-123231	Triticum aestivum	83.47	5.00e-152	529.00
IUUC-Tur-126144	Triticum urartu	68.58	4.00e-135	473.00
IUUC-Ttr-128464	Tursiops truncatus	33.69	4.00e-28	118.00
IUUC-Vpa-130357	Vicugna pacos	31.90	1.00e-14	73.20
IUUC-Xtr-132679	Xenopus tropicalis	31.09	1.00e-24	107.00
IUUC-Yli-134615	Yarrowia lipolytica	42.67	7.00e-34	137.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence