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Basic Information Integrated Annotations
Tag Content
iUUCD ID IUUC-Cel-018281
Ensembl Protein ID R03D7.4
UniProt Accession Q09413; ELOA1_CAEEL
Genbank Protein ID CAA86857.1
Protein Name Transcription elongation factor B polypeptide 3; Elongin-A; RNA polymerase II transcription factor SIII subunit A
Genbank Nucleotide ID Z46828
Gene Name R03D7.4
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
WBGene00010990 R03D7.4 R03D7.4
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
microRNARAID2
Protein-protein Interaction
IIDiRefIndexPINAMentha
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family Identity E-Value Score Source Orthology
E3 adaptor/Cullin RING/SCF/F-box 28.03 1.00e-05 46.20 IUUC-Sce-106376
E3 adaptor/Cullin RING/ECS/SOCS_VHL_BC-box 28.03 1.00e-05 46.20 IUUC-Sce-106376
Active Site
Position(s) Description Evidence
N/A N/A N/A
Organism Caenorhabditis elegans
Functional Description
(View)

Functional Description


     SIII, also known as elongin, is a general transcription elongation factor that increases the RNA polymerase II transcription elongation past template-encoded arresting sites. Subunit A is transcriptionally active and its transcription activity is strongly enhanced by binding to the dimeric complex of the SIII regulatory subunits B and C (elongin BC complex).
 SIII, also known as elongin, is a general transcription elongation factor that increases the RNA polymerase II transcription elongation past template-encoded arresting sites. Subunit A is transcriptionally active and its transcription activity is strongly enhanced by binding to the dimeric complex of the SIII regulatory subunits B and C (elongin BC complex).
Protein Sequence
(Fasta)
MPETDEEKVR RYTECLMNGI DPKRALKRLY DLNVSPEVFK SADTYQCVKR YESSPELAKY 60
AKRVRDKLLG GRKREKGGGE DDADIEHTAL KKAKKEEVNL DEEFAEAMKS GVSAQASSAP 120
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Protein Fasta Sequence


>IUUC-Cel-018281|E3,F-box;E3,SOCS|Caenorhabditis elegans
Please wait for a moment...
Nucleotide Sequence
(Fasta)
TTCTCTTCTC AACGTGTCTT CGTCGCCGTC GCCACTTTCT CCCTTTGACG AGGACACTTC 60
ACAACAAAAC TACTGCACAC ACACACACAT ACAATGCCGG AGACGGACGA GGAGAAGGTT 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Cel-018281|E3,F-box;E3,SOCS|Caenorhabditis elegans
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0804--Transcription
KW-0805--Transcription regulation
Interpro

IPR010684--RNA_pol_II_trans_fac_SIII_A
Pfam

PF06881--Elongin_A
Gene Ontology

GO:0070449--C:elongin complex
GO:0016021--C:integral component of membrane
GO:0008023--C:transcription elongation factor complex
GO:0006355--P:regulation of transcription, DNA-templated
GO:0006368--P:transcription elongation from RNA polymerase II promoter
KEGG cel:CELE_R03D7.4
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aml-001705 Ailuropoda melanoleuca 32.00 2.00e-10 60.10
IUUC-Apl-003659 Anas platyrhynchos 31.94 2.00e-16 79.70
IUUC-Aca-004513 Anolis carolinensis 33.33 8.00e-17 81.30
IUUC-Ago-007835 Ashbya gossypii 29.85 3.00e-06 44.70
IUUC-Acl-008085 Aspergillus clavatus 28.81 5.00e-10 57.40
IUUC-Afu-008931 Aspergillus fumigatus 24.00 4.00e-08 51.20
IUUC-Ani-009161 Aspergillus nidulans 24.24 6.00e-07 47.00
IUUC-Ang-009875 Aspergillus niger 24.60 2.00e-06 45.80
IUUC-Ame-011668 Astyanax mexicanus 34.07 2.00e-12 66.60
IUUC-Bta-013219 Bos taurus 28.49 4.00e-09 55.80
IUUC-Bci-014000 Botrytis cinerea 25.71 3.00e-06 44.70
IUUC-Bdi-014527 Brachypodium distachyon 23.64 7.00e-04 36.20
IUUC-Bol-016438 Brassica oleracea 26.24 2.00e-07 49.30
IUUC-Bra-017526 Brassica rapa 26.03 1.00e-08 52.80
IUUC-Cja-018759 Callithrix jacchus 29.80 5.00e-09 55.10
IUUC-Cfa-020766 Canis familiaris 33.33 1.00e-11 63.50
IUUC-Cpo-022250 Cavia porcellus 25.71 9.00e-09 54.30
IUUC-Csa-023293 Chlorocebus sabaeus 32.67 5.00e-11 62.00
IUUC-Cin-025556 Ciona intestinalis 28.74 4.00e-14 71.60
IUUC-Csv-026153 Ciona savignyi 36.56 5.00e-14 69.70
IUUC-Cgl-026733 Colletotrichum gloeosporioides 24.44 4.00e-03 34.70
IUUC-Cne-026936 Cryptococcus neoformans 23.96 3.00e-04 38.50
IUUC-Dre-027828 Danio rerio 27.35 1.00e-17 83.60
IUUC-Dse-031436 Dothistroma septosporum 23.58 2.00e-05 42.40
IUUC-Dme-031809 Drosophila melanogaster 28.39 4.00e-16 78.60
IUUC-Ete-032677 Echinops telfairi 33.11 6.00e-16 78.20
IUUC-Eca-034045 Equus caballus 33.15 1.00e-15 76.60
IUUC-Eeu-035063 Erinaceus europaeus 32.00 2.00e-10 60.10
IUUC-Fca-036488 Felis catus 32.67 3.00e-11 62.80
IUUC-Fal-037501 Ficedula albicollis 31.25 2.00e-16 80.50
IUUC-Fso-038123 Fusarium solani 30.00 6.00e-06 43.90
IUUC-Gmo-038614 Gadus morhua 32.26 3.00e-13 68.90
IUUC-Ggr-039793 Gaeumannomyces graminis 31.11 1.00e-08 53.10
IUUC-Gga-040738 Gallus gallus 33.08 7.00e-16 78.20
IUUC-Gac-041381 Gasterosteus aculeatus 33.59 4.00e-16 78.60
IUUC-Gma-042964 Glycine max 21.21 6.00e-05 39.70
IUUC-Ggo-045139 Gorilla gorilla 32.45 5.00e-11 62.00
IUUC-Hsa-046083 Homo sapiens 32.45 5.00e-11 62.00
IUUC-Itr-048970 Ictidomys tridecemlineatus 32.04 1.00e-12 67.00
IUUC-Lch-050369 Latimeria chalumnae 30.41 1.00e-16 80.10
IUUC-Lpe-050727 Leersia perrieri 26.17 1.80e-02 32.00
IUUC-Loc-052347 Lepisosteus oculatus 34.02 8.00e-13 67.40
IUUC-Lma-053027 Leptosphaeria maculans 21.37 2.00e-03 35.40
IUUC-Laf-053575 Loxodonta africana 33.33 9.00e-12 64.30
IUUC-Mcc-054823 Macaca mulatta 32.67 5.00e-11 62.00
IUUC-Meu-056878 Macropus eugenii 28.98 2.00e-14 72.80
IUUC-Mor-056948 Magnaporthe oryzae 26.14 7.00e-07 47.00
IUUC-Mtr-057811 Medicago truncatula 24.24 1.00e-06 45.40
IUUC-Mla-058917 Melampsora laricipopulina 33.87 4.00e-06 44.30
IUUC-Mga-059445 Meleagris gallopavo 29.51 7.00e-16 78.20
IUUC-Mmr-060665 Microcebus murinus 33.13 1.00e-11 63.90
IUUC-Mdo-062430 Monodelphis domestica 32.40 5.00e-15 75.50
IUUC-Mmu-064173 Mus musculus 31.74 6.00e-12 65.10
IUUC-Mac-065364 Musa acuminata 27.21 2.00e-08 51.20
IUUC-Mpu-066344 Mustela putorius furo 32.67 4.00e-11 62.40
IUUC-Mlu-068101 Myotis lucifugus 28.62 2.00e-13 70.10
IUUC-Nfi-068489 Neosartorya fischeri 22.40 3.00e-07 48.50
IUUC-Opr-070498 Ochotona princeps 31.31 6.00e-09 54.30
IUUC-Ont-071579 Oreochromis niloticus 34.07 8.00e-12 64.30
IUUC-Oan-072862 Ornithorhynchus anatinus 29.88 2.00e-15 76.30
IUUC-Ocu-073882 Oryctolagus cuniculus 32.33 4.00e-11 62.00
IUUC-Oba-075710 Oryza barthii 27.41 9.00e-06 42.40
IUUC-Ogl-077171 Oryza glaberrima 28.81 3.00e-05 40.80
IUUC-Ogu-078827 Oryza glumaepatula 28.81 1.00e-04 39.30
IUUC-Oin-080204 Oryza indica 27.41 1.00e-05 42.40
IUUC-Olo-081049 Oryza longistaminata 27.41 3.00e-05 41.20
IUUC-Ome-081128 Oryza meridionalis 27.87 8.00e-05 38.50
IUUC-Oni-083077 Oryza nivara 27.41 1.00e-05 42.70
IUUC-Opu-083270 Oryza punctata 27.19 8.00e-05 39.70
IUUC-Oru-084299 Oryza rufipogon 27.87 8.00e-05 38.50
IUUC-Osa-085671 Oryza sativa 26.85 4.00e-04 35.00
IUUC-Ola-086456 Oryzias latipes 31.82 1.00e-12 67.00
IUUC-Oga-087918 Otolemur garnettii 32.67 3.00e-11 62.80
IUUC-Oar-089663 Ovis aries 32.02 4.00e-15 75.50
IUUC-Ptr-091033 Pan troglodytes 32.67 5.00e-11 62.00
IUUC-Pan-092277 Papio anubis 32.45 5.00e-11 62.00
IUUC-Psi-094086 Pelodiscus sinensis 35.11 5.00e-17 81.60
IUUC-Pma-094683 Petromyzon marinus 33.05 8.00e-13 66.20
IUUC-Pno-094930 Phaeosphaeria nodorum 21.09 2.00e-08 51.60
IUUC-Pfo-097334 Poecilia formosa 36.08 1.00e-12 67.00
IUUC-Pab-098345 Pongo abelii 32.67 5.00e-11 62.00
IUUC-Pop-099683 Populus trichocarpa 34.00 1.00e-03 34.30
IUUC-Pca-100737 Procavia capensis 32.10 7.00e-11 61.20
IUUC-Pva-102497 Pteropus vampyrus 26.43 2.00e-08 53.10
IUUC-Pgr-103464 Puccinia graminis 37.14 3.00e-09 52.80
IUUC-Pte-104288 Pyrenophora teres 23.24 1.00e-05 42.00
IUUC-Pyt-104772 Pyrenophora triticirepentis 22.54 2.00e-05 42.00
IUUC-Rno-105177 Rattus norvegicus 32.45 1.00e-11 63.90
IUUC-Sce-106376 Saccharomyces cerevisiae 28.03 2.00e-06 45.40
IUUC-Sha-106480 Sarcophilus harrisii 27.78 1.00e-14 73.90
IUUC-Sja-107782 Schizosaccharomyces japonicus 25.55 8.00e-06 42.70
IUUC-Spo-108157 Schizosaccharomyces pombe 25.62 1.00e-06 45.10
IUUC-Sit-109960 Setaria italica 24.09 3.00e-07 47.40
IUUC-Sar-113255 Sorex araneus 32.45 5.00e-11 62.00
IUUC-Sbi-114855 Sorghum bicolor 25.00 8.00e-05 39.30
IUUC-Sre-115076 Sporisorium reilianum 26.60 8.00e-08 50.80
IUUC-Ssc-115875 Sus scrofa 31.11 6.00e-15 75.10
IUUC-Tgu-117066 Taeniopygia guttata 31.25 1.00e-16 80.50
IUUC-Tru-117881 Takifugu rubripes 35.16 5.00e-12 64.70
IUUC-Tsy-119531 Tarsius syrichta 31.34 1.00e-13 70.90
IUUC-Tni-120325 Tetraodon nigroviridis 34.35 4.00e-17 82.00
IUUC-Tvi-122542 Trichoderma virens 26.39 1.00e-03 35.40
IUUC-Tae-122727 Triticum aestivum 24.07 3.00e-04 38.10
IUUC-Tur-126506 Triticum urartu 26.21 3.00e-05 40.80
IUUC-Tbe-127648 Tupaia belangeri 32.45 3.00e-11 62.40
IUUC-Ttr-129287 Tursiops truncatus 33.33 2.00e-15 76.60
IUUC-Uma-129543 Ustilago maydis 33.33 8.00e-10 57.40
IUUC-Vpa-130645 Vicugna pacos 32.00 1.00e-14 73.90
IUUC-Xtr-132709 Xenopus tropicalis 34.85 1.00e-16 80.10
IUUC-Xma-133858 Xiphophorus maculatus 36.08 1.00e-12 67.40
IUUC-Yli-134386 Yarrowia lipolytica 25.00 5.00e-09 53.90
IUUC-Zma-135412 Zea mays 27.01 2.00e-06 44.30
Created Date 25-Jun-2017

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